氟、氯和甲基取代丁二酰亚胺的结构、红外光谱和热力学性质的密度泛函理论研

用密度泛函理论（DFT）的B3LYP方法（6－31G基组）,计算研究了丁二酰亚胺（SIM）的氟、氯和甲基取代物（SIMF,SIMCI和SIMMe)的几何构型、电子结构、红外光谱和热力学性质,讨论了取代基效应。结果表明,SIMF和SIMCI均为平面构型,SIMMe接近平面构型。羰基伸缩振动频率（vc=o)均分裂为两个谱带,低频带出现在1734-1771cm^-1,高频带出现在1792－1822cm^-1,且前者强于后者。与SIM相比,吸电子基（F和CI）使vc=0和偶极矩增大,推电子基（CH3）的影响正相反。由校正频率计算了298－800K温度范围的热力学性质熵（S°）和热容（Cp°）。     

CO在轻微氧化的Mo(100)表面上的吸附和反应

应用HREELS和TDS研究了120K时CO在轻微氧化的Mo(100)上的吸附和脱附状况.120K时,CO在轻微氧化的Mo(100)上存在顶位垂直吸附(ν_CO=2016～2050cm^-1)、四重空位倾斜吸附(ν_CO=1088cm^-1)和通过π键与表面发生作用的倾斜吸附(ν_CO=1600cm^-1).当表面温度升高时,顶位吸附的CO在低覆盖度下发生解离,但在较高覆盖度下,可以同时发生脱附(T_p=319K)和解离;而后两种吸附态在温度升高时只发生解离.CO解离产生的C原子和O原子在930K和1320K时可重新结合成CO脱附.     

FC(O)SNCO的电子结构和光电离解离过程

由于拥有―C(O)S―和―NCO基团, FC(O)SNCO的分子和电子结构是非常有趣的. 利用FC(O)SCl和AgNCO制备了FC(O)SNCO,并利用HeI光电子能谱(PES)、光电离质谱(PIMS)以及理论计算研究了其分子和电子结构. 通过将实验、理论计算以及自然键轨道(NBO)分析结合起来, 获得了FC(O)SNCO的最稳定分子构型. 利用外壳层格林函数(OVGF)方法以及与相似化合物的比较, 对其光电子能谱进行了指认. 理论计算表明,对于中性分子最稳定的构型为syn-syn非平面构型, 而电离后的离子最稳定构型为syn-syn平面构型. 实验结果表明, 第一电离能来自于S的孤对电子轨道, 为10.33 eV. 第二至第六电离能分别为12.03、13.23、13.77、14.78、15.99 eV, 并对这些电离能进行了指认. 在光电离质谱中产生了六个质谱峰, 分别为SN⁺、FC(O)⁺、SNCO⁺、FC(O)SN⁺、C(O)SNCO⁺、FC(O)SNCO^+·, 其中FC(O)SNCO^+·的峰是最强峰. 结合HeI光电子能谱和理论计算, 对PIMS进行了分析,并研究了可能的电离和解离过程并对其进行了讨论.     

人体乳腺癌组织红外光谱特征的研究

利用红外光谱法对正常乳腺组织、良性肿瘤和乳腺癌组织进行了对比研究.与正常组织的光谱相比,癌组织中蛋白质的某些氨基酸残基的ν_C-O(H)谱带位置明显向高波数位移,表明组织中该基团中的氢键大部分被破坏.蛋白质分子的氢键化的ν_NH谱带位置向低波数位移,且谱带形状也有所改变,说明NH…O=C氢键化程度增强.核酸的磷酸二酯基团的ν_s,PO₂^-谱带吸收强度明显增强,反映癌细胞内DNA相对含量增加;位于970cm^-1附近的ν_s,PO₃^{-谱带强度增加,提示细胞中磷酸化蛋白含量增加.而胶原蛋白的特征谱带强度减弱,说明其相对含量减少.研究证明,红外光谱可在分子水平上揭示乳腺肿瘤的特征.}     

NaNO3和NaClO4在N,N-二甲基甲酰胺中的离子溶剂化

利用红外光谱研究了NaNO₃和NaClO₄在N,N-二甲基甲酰胺(DMF)溶剂中发生离子-溶剂和离子-离子的相互作用, 分析结果表明, DMF的OC-N谱带发生了明显的变化. 定量计算了在Na⁺浓度为0.22~1.24 mol/kg范围内的溶剂化数为1~4. 对谱图中酰胺基上C-N和CO的特征峰强度随Na⁺浓度变化的对比, 推测离子溶剂化作用导致DMF的酰胺基内部形成共轭键. 利用量子化学方法进行优化及热力学性质计算, 得到C-N键伸缩振动频率及红外光谱强度变化规律. 优化结构与实验结论相符合. 由NaNO₃的ν₂谱带及NaClO₄的ν₁谱带的解析得到溶液中阴离子缔合效应的一般规律, 并通过阴离子缔合特征峰与酰胺基上的N-C-N面外振动峰(865 cm^-1)的变化情况, 讨论了溶液中的离子溶剂化作用.     

从头计算法研究取代锂卡宾正离子的分子轨道和稳定化能

用从头计算法计算了各种取代的锂卡宾正离子XCHLi⁺(X=OH,NH₂,CH₂CH,NC,C₆H₅)相对于锂卡宾正离子CH₂Li⁺的稳定化能,并讨论了稳定化能和它们分子轨道的关系。具有π给予功能的取代基,在其共平面分子构型中,由于和卡宾碳和锂原子空轨道形成二电子多中心共轭分子轨道,因而具有最大的稳定作用。相反,在相应的正交构型中,稳定作用则较小。同时具有π给予和σ接受效应的取代基,π给予起主导作用。仅有σ接受功能的取代基,则有去稳定作用。考察它们的LUMO特点,发现它们具有较高的亲电反应性能。     

四(对-十八酰氧基)苯基卟啉及其过渡金属配合物的合成及红外光声光谱研究

合成了5,10,15,20-四(对-十八酰氧基)苯基卟啉及其Mn(Ⅲ),Fe(Ⅲ),Co(Ⅱ),Ni(Ⅱ),Cu(Ⅱ)和Zn(Ⅱ)配合物,用元素分析和紫外-可见光谱等方法进行了表征.研究了这7种卟啉化合物在3600～190cm^-1范围内的傅里叶变换红外光声光谱,对主要谱带进行了经验归属.结果表明,3318.0及968.4cm^-1处的吸收谱带分别是四(对-十八酰氧基)苯基卟啉N-H键的伸缩振动和面内弯曲振动,生成配合物后这些谱带消失.243cm^-1附近的吸收谱带是M-N键伸缩振动和卟啉环变形振动的复合振动,321cm^-1附近的吸收谱带是M-Cl键的伸缩振动,金属敏感带出现在1350,1018,995,802,740,632和232cm^-1附近.     

四(对-辛酰氧基)苯基卟啉配合物的红外光声光谱

测试并研究了四(对-辛酰氧基)苯基卟啉及其Mn(Ⅲ)、Fe(Ⅲ)、co(Ⅱ)、Ni(Ⅱ)、Cu(Ⅱ)、Zn(Ⅱ)配合物在3600～190cm^-1范围内的傅立叶变换红外光声光谱,对主要谱带进行了经验归属.结果表明:3318.0和968.0cm^-1处的吸收谱带分别是四(对-辛酰氧基)苯基卟啉N-H键的伸缩振动和面内弯曲振动,生成配合物后这些谱带消失.～243cm^-1处的吸收谱带是M-N键伸缩振动和卟啉环变形振动的复合振动,～320cm^-1处的吸收谱带是M-Cl键的伸缩振动,金属敏感带出现在1504,1350,1022,995,796和235cm^-1处.     

2, 5-二氟苯酚分子之旋转异构物的质量分辨阈值电离光谱

利用共振双光子电离(R²PI)技术和质量分辨阈值电离(MATI)技术来研究2, 5-二氟苯酚分子。实验所测得的顺式、反式2, 5-二氟苯酚分子电子激发能E₁分别为36448和36743 cm^-1,绝热电离能分别为71164和71476 cm^-1。这两个顺反转动同素异构分子在电子激发S₁态与离子D₀态活性振动主要是由于面内环变形和与取代基相关的弯曲振动。分析2, 5-二氟苯酚分子的振动光谱、D₀态离子光谱以及理论计算均表明这两个转动异构体在D₀态的几何构型与S₁态的中性几何构型相当相似。     

PO2X…PX3/PH2X(X=F,Cl, Br,CH3, NH2)复合物中π-hole磷键作用的电子密度拓扑分析

磷键作为一种新型的分子键合力,因在晶体工程和超分子合成等方面的重要作用而越来越多地引起科研工作者的广泛关注。本文采用量子化学从头算和电子密度拓扑分析等方法,在MP2/aug-cc-pVTZ理论水平上,对PO₂X…PX₃和PO₂X…PH₂X (X = F, Cl, Br, CH₃, NH₂) π型复合物的结构和磷键性质进行了理论研究。研究表明:π-hole磷键复合物存在A和B两种稳定构型,分别以P…P和P…X磷键作用为主。分子中原子(AIM)、非共价作用(NCI)、电子定域函数(ELF)及适应性自然密度划分(AdNDP)分析表明,不同取代基对该类磷键作用的性质产生很大影响:当取代基为给电子基(CH₃, NH₂)时,磷键具有明显的共价作用特征;当取代基为吸电子基(F, Cl, Br)时,构型和取代基不同的磷键分别表现为非共价、部分共价或共价作用特征。自然键轨道(NBO)分析指出,分子间磷键的Wiberg键级的数值越大,磷键的共价性越强,磷键的作用强度越大。构型B的电荷转移主要是PX₃/PH₂X中X原子上的孤对电子转移到PO₂X中π^*(P=O)反键空轨道。     

The role of the 5f orbitals in bonding, aromaticity, and reactivity of planar isocyclic and heterocyclic uranium clusters

The molecular and electronic structures, stabilities, bonding features and magnetic properties of prototypical planar isocyclic cyclo-U n X n ( n = 3, 4; X = O, NH) and heterocyclic cyclo-U n (mu 2-X) n ( n = 3, 4; X = C, CH, NH) clusters as well as the E@[ c-U 4(mu 2-C) 4], (E = H (+), C, Si, Ge) and U@[ c-U 5(mu 2-C) 5] molecules including a planar tetracoordinate element E (ptE) and pentacoordinate U (ppU) at the ring centers, respectively, have been thoroughly investigated by means of electronic structure calculation methods at the DFT level. It was shown that 5f orbitals play a key role in the bonding of these f-block metal systems significantly contributing to the cyclic electron delocalization and the associated magnetic diatropic (magnetic aromaticity) response. The aromaticity of the perfectly planar cyclo-U n X n ( n = 3, 4; X = O, NH), cyclo-U n (mu 2-X) n ( n = 3, 4; X = C, CH, NH), E@[ c-U 4(mu 2-C) 4], (E = H (+), C, Si, Ge) and U@[ c-U 5(mu 2-C) 5] clusters was verified by an efficient and simple criterion in probing the aromaticity/antiaromaticity of a molecule, that of the nucleus-independent chemical shift, NICS(0), NICS(1), NICS zz (0) and the most refined NICS zz (1) index in conjunction with the NICS scan profiles. Natural bond orbital analyses provided a clear picture of the bonding pattern in the planar isocyclic and heterocyclic uranium clusters and revealed the features that stabilize the ptE's inside the six- and eight-member uranacycle rings. The ptE's benefit from a considerable electron transfer from the surrounding uranium atoms in the E@[ c-U 4(mu 2-C) 4], (E = H (+), C, Si, Ge) and U@[ c-U 5(mu 2-C) 5] clusters justifying the high occupancy of the np orbitals of the central atom E.     

Molecular and electronic structure of δ-valerothiolactone

The crystal structure of the six-member heterocyclic δ-valerothiolactone (1-thiocycloalkan-2-one) compound has been determined by X-ray diffraction at low temperature, revealing that its skeleton adopts a half-chair conformation. The conformation around the thioester group is almost planar with an anti orientation of the C=O double bond with respect the S-C single bond [C(2)-S(1)-C(6)-O(1) = 176.26(8)°]. The skeletal parameters, especially valence angles [∠C5-C6-S = 121.19(6)°, ∠O=C6-C5 = 122.25(8)°, ∠C6-S-C2 = 106.80(4)°], differ from those typically found in acyclic thioester compounds, symptomatic of the presence of strain effects. The conventional ring strain energy was determined to be 7.5 kcal/mol at the MP2/6-311++G(d,p) level of calculation within the hyperhomodesmotic model approximation. Moreover, the valence electronic structure was investigated by HeI photoelectron spectroscopy assisted by quantum chemical calculations at the OVGF/6-311++G(d,p) level of theory. The first three bands at 9.35, 9.50, and 11.53 eV denote ionizations related with the n(S), n(O), and π(C=O) orbitals, respectively, demonstrating the importance of the -SC(O)- group in the outermost electronic properties.     

Chlorodifluoroacetyl cyanide, ClF2CC(O)CN: synthesis, structure, and spectroscopic characterization

The novel molecule difluorochloroacetyl cyanide, ClF(2)CC(O)CN, has been characterized by IR (gas phase, Ar matrix), Raman (liquid), (19)F and (13)C NMR, and photoelectron (PES) spectroscopies; photoionization mass spectrometry (PIMS); and gas electron diffraction (GED). The conformational properties of ClF(2)CC(O)CN have been studied by joint application of vibrational spectroscopy, GED, and quantum chemical calculations. The existence of two conformers is detected in the gas and liquid phases, in which the C-Cl bond adopts gauche and syn orientations with respect to the C═O group. The computed enthalpy difference is in harmony with the experimental results of the gauche being more stable than the syn conformer by ΔH° = 1.3 kcal mol(-1) (MP2/cc-pVTZ). The valence electronic properties and the possible ionization and dissociation processes of the title compound are studied using the PES and PIMS. The experimental first vertical ionization energy of 12.0 eV corresponds to the ejection of an electron of the oxygen lone pairs. Taking into account the properties and broad applications of acyl cyanides, ClF(2)CC(O)CN is a promising new precursor in preparative chemistry.     

Gas phase structure and conformational properties of trifluoroacetic anhydride, CF3C(O)OC(O)CF3

The geometric structure of trifluoroacetic anhydride, CF₃C(O)OC(O)CF₃, has been studied by gas electron diffraction (GED) and quantum chemical calculations (MP2 and B3LYP with 6-31G^* basis sets). The GED analysis results in a single conformer with synperiplanar orientation of the two CO bonds. This analysis, however, cannot discriminate between a planar equilibrium structure (C_2v symmetry) with large amplitude torsional motions around the OC bonds and a nonplanar equilibrium structure (C₂ symmetry) with a low barrier at the planar arrangement. An effective dihedral angle φ(COCO=18(4)° is obtained. Both quantum chemical methods predict a nonplanar equilibrium structure of C₂ symmetry and φ(COCO)=16.5° and 13.9°, respectively.     

Synthesis，Crystal and Molecular Structure of 1，1＇－Bis（N－phenylhydroxyaminocarbonyl）ferrocene

Ｓｙｎｔｈｅｓｉｓ，ＣｒｙｓｔａｌａｎｄＭｏｌｅｃｕｌａｒＳｔｒｕｃｔｕｒｅｏｆ１，１＇－Ｂｉｓ（Ｎ－ｐｈｅｎｙｌｈｙｄｒｏｘｙａｍｉｎｏｃａｒｂｏｎｙｌ）ｆｅｒｒｏｃｅｎｅ￥ＺｈａｎｇＷｅｎ；ＬｉＦｅｎｇ－Ｚｅ；ＬｉｕＱｉ－Ｗａｎｇ（Ｄｅｐａｒｔｍ...     

Structure and conformational properties of diacetyl sulfide in the gaseous and condensed phases explored by gas electron diffraction, single-crystal X-ray diffraction, vibrational spectroscopy, and quantum chemical calculations.

On the evidence of the electron diffraction pattern of the vapor, of the IR spectrum of the matrix-isolated molecule, and of quantum chemical calculations, the diacetyl sulfide molecule, CH3C(O)SC(O)CH3, adopts a planar heavy-atom skeleton with the [sp,ap] conformation. Other conformations contribute little (<1%) to the population of the gaseous molecules at normal temperatures. Salient structural parameters (r(a) structure, distances (in A), angles (in deg), and 3sigma uncertainties in parentheses) were as follows: r(C=O) 1.198(2)/1.196(2), r(C-S) 1.787(3)/1.808(3), r(C-C) 1.483(4)/1.472(4), angleC-S-C 108.8(9), angleS-C=O 125.7(6)/115.1(6), and angleS-C-C 121.1(7)/111.2(7). The structure of a single crystal at 150 K [monoclinic, P2(1)/n, a = 4.2230(7) A, b = 11.2105(17) A, c = 12.332(2) A, beta = 94.544(16) degrees] also reveals planar molecules with the same conformation and dimensions close to those of the gaseous molecule. Changes in the vibrational spectra of the compound accompanying the transition from the vapor to the condensed phases are attributed not to the presence of more than one conformer but to differences in the local environment of the two carbonyl groups. The properties deduced are compared with those of other compounds of the type CH3C(O)XC(O)CH3 (X = CH2, NH, or O).     

STRUCTURE OF A THYMINE-THYMINE ADDUCT FORMED BY MENADIONE PHOTOSENSITIZATION

Abstract— The structure of one of the dithymine adducts formed by near-UV photosensitization of aqueous oxygenated thymine in the presence of 2-methyl- 1, 4-naphthoquinone is reported. The compound, 6'β-hydroxy-5'β-1 - [5-methylpyrimidinyl- 2,4-dione]-5'-6'-dihydrothymine has one thymine ring (ring I) linked through the 1-nitrogen atom to the C5' atom of a second thymine, which has been hydroxylated af C6' (ring II). Crystals are monoclinic, space group 12/c, and the structure was refined to R_obs= 0.036 for 2072 unique reflections with intensities I greater than 2.33(I). Ring I is planar, whereas ring II is not. Ring I and the OH group on ring II are cis to ring II. The planar ring I and the OH group are attached, respectively, in an equatorial and axial manner to ring II (which is in the sofa conformation). The planar rings I of close-lying pairs of molecules stack parallel to each other. The structure is held together by a hydrogen-bonding system consisting of the water molecules, the NH groups, two of the C=O groups and the OH group. The chemical formula and relative configurations at C5' and C6 are established by this analysis.     

Synthesis,Crystal Structure and Quantum Chemical Study of the Ladder Organotin Compound {[（C6H5CH2）2Sn]2（O）（Cl2）}2

The title compound {[（C6H5CH2）2Sn]2（O）（Cl2）}2 has been synthesized by the reaction of bisbenzyltin dichloride with NaOH dilute solution, and its structure was determined by X-ray diffraction. The crystal belongs to monoclinic, space group C2/c, with a = 2.5081（17）, b = 1.0089（7）, c = 2.0909（14） nm, β = 94.267（8）°, V= 5.276（6） nm^3, Z = 4, De= 1.734 g/cm^3,μ（MoKa） = 21.55 cm^-1, F（000） = 2704, R = 0.0398 and Rw = 0.1024. According to structural analysis, the tin atom adopts a distorted five-coordinate trigonal bipyramidal geometry, and the ladder-like structure is shaped by one planar four-membered Sn2O2 ring together with two planar four-membered Sn2OCl rings.     

Synthesis, Crystal Structure and Quantum Chemistry of Dibutyltin 3, 4-Dimethoxybenzotate Compound

The dibutyltin 3,4-dimethoxybenzotate compound {[(3,4-(CH3O)2C6H3COO) Sn(Bu-n)2]2O}2 has been synthesized by the reaction of dibutyltin oxide with 3,4-dimethoxybenzoic acid. Its structure was determined by X-ray single-crystal diffraction. The crystal belongs to the triclinic system,space group P1 with a = 1.2003(2),b = 1.2821(3),c = 1.3666(3) nm,α = 80.50(3),β = 65.56(3),γ = 73.36(3)°,Z = 2,V = 1.8318(6) nm3,Dc = 1.530 Mg·m-3,μ(MoKa) = 1.413 mm-1,F(000) = 860,R = 0.0554 and wR = 0.1092. In the complex,each tin atom adopts a distorted tigonal bipyramidal structure,and the dimer structure is shaped by one Sn2O2 planar four-membered ring. The stabilities of the title complex,along with its orbital energies and composition characteristics of some frontier molecular orbitals have been investigated by means of quantum chemistry calculation methods.     

Synthesis and Crystal Structure of 2-Chloromethyl-1H-benzimidazole Nitrate, [ClCH_2(C_7H_6N_2)]NO_3

1 INTRODUCTION Benzimidazole is an interesting heterocyclic compound because it is found in various naturally occurring drugs, such as omeprazole, astemizole and emedastine difumarate[1]. The efficacy of sub- stituted benzimidazoles in the treatment of parasitic infections is well known[2～4]. Substituted benzimid- azole moieties are established pharmacophores in parasitic chemotherapy. Bis(2-benzimidazole) and some substituted bis(benzimidazol-2-yl)alkanes have attracted much interest …