Three-dimensional visualization of columnar vortices in rotating Rayleigh–Bénard convection

Journal of Visualization -  To enrich the three-dimensional experimental details of vortex structures in rotating Rayleigh–Bénard convection, we established a technique...     

2‐Oxazoline Formation for Selective Chemical Labeling of 5‐Hydroxylysine

Hydroxylation of lysine, one of posttranslational modifications of proteins, generates 5‐hydroxylysine (Koh) and plays a crucial role in regulating protein functions in cellular activity. We have developed a chemical labeling method of Koh. The 1,2‐aminoalcohol moiety of Koh in synthetic peptide sequences was trapped by an alkyne‐containing benzimidate to form a 2‐oxazoline ring. An additional ammonia treatment process removed the undesirable amidine residue formed between benzimidate and lysine. During the ammonia treatment, the oxazoline residue formed at Koh mainly remained intact, and the ring opening to the amide form was observed for only part of oxazoline, indicating that the chemical labeling is amino acid selective. Azide‐substituted biotin or fluorescent dye was attached to the peptide through Huisgen cycloaddition at Koh and converted into an alkyne‐labeled oxazoline form. The Koh‐labeling assay could provide a platform to enhance proteomic research of lysine hydroxylation.     

Pyridine-Stabilized Cationic Silanethione Tungsten Complexes: Synthesis,Structures, and Reactivity

Silanethione compounds, R₂Si=S, have been recognized as highly reactive species. One reliable way to stabilize silanethione is its coordination to transition metal fragments to convert silanethione-coordinated transition metal complexes. Herein, we report the synthesis, structure, and reactivity of a second cationic silanethione tungsten complex [Cp*(OC)₃W{S=SiR₂(py)}]TFPB (R=Me ( 5 a ), Ph ( 5 b ), Cp*: η⁵-C₅Me₅, py: pyridine, and TFPB⁻: [B{3,5-(CF₃)₂C₆H₃}₄]⁻). Complex 5 was obtained by H⁻ abstraction from the Si atom in the corresponding silylsulfanyl complex Cp*(OC)₃W(SSiR₂H) ( 4 ) with Ph₃CTFPB, followed by the addition of pyridine. The reaction of 5 with PhNCS and PMe₃ produced [Cp*(OC)₃W{SSiR₂N(Ph)C(PMe₃)₂}]TFPB (R=Me ( 6 a ), Ph ( 6 b )) via the elimination of pyridine and the addition of the 1,3-dipolar species PhNC(PMe₃)₂ ( A ) to the Si atom.     

Iron–Oxalato Framework with One‐Dimensional Open Channels for Electrochemical Sodium‐Ion Intercalation

Discovery of a new class of ion intercalation compounds is highly desirable due to its relevance to various electrochemical devices, such as batteries. Herein, we present a new iron–oxalato open framework, which showed reversible Na⁺ intercalation/extraction. The hydrothermally synthesized K₄Na₂[Fe(C₂O₄)₂]₃ ? 2 H₂O possesses one‐dimensional open channels in the oxalato‐bridged network, providing ion accessibility up to two Na⁺ per the formula unit. The detailed studies on the structural and electronic states revealed that the framework exhibited a solid solution state almost entirely during Na⁺ intercalation/extraction associated with the reversible redox of Fe. The present work demonstrates possibilities of the oxalato frameworks as tunable and robust ion intercalation electrode materials for various device applications.     

Copper‐Catalyzed Stereoselective Aminoboration of Bicyclic Alkenes

A copper‐catalyzed aminoboration of bicyclic alkenes, including oxa‐ and azabenzonorbornadienes, has been developed. With this method, amine and boron moieties are simultaneously introduced at an olefin with exo selectivity. Subsequent stereospecific transformations of the boryl group can provide oxygen‐ and nitrogen‐rich cyclic molecules with motifs that may be found in natural products or pharmaceutically active compounds. Moreover, a catalytic asymmetric variant of this transformation was realized by using a copper complex with a chiral bisphosphine ligand, namely (R,R)‐Ph‐BPE.     

Total Synthesis and Biological Evaluation of the Antibiotic Lysocin E and Its Enantiomeric,Epimeric, and N‐Demethylated Analogues

Lysocin E, a macrocyclic peptide, exhibits potent antibacterial activity against methicillin‐resistant Staphylococcus aureus (MRSA) through a novel mechanism. The first total synthesis of lysocin E was achieved by applying a full solid‐phase strategy. The developed approach also provides rapid access to the enantiomeric, epimeric, and N‐demethylated analogues of lysocin E. Significantly, the antibacterial activity of the unnatural enantiomer was comparable to that of the natural isomer, suggesting the absence of chiral recognition in its mode of action.     

Postprocessing algorithm for particle-tracking velocimetry based on ellipsoidal equations

 Accurate postprocessing methods are required in order to analyze the detailed flow structures from the scattered data of particle-tracking velocimetry (PTV). In particular, vorticity distributions and stream functions are not reasonably obtained by conventional methods. This paper proposes a new postprocessing algorithm based on ellipsoidal differential equations; this method utilizes data as discrete boundary conditions. The results obtained by the proposed algorithm fully satisfy the equation of continuity and simultaneously correspond well with the raw data. The performance of the algorithm is examined by applying it to two-dimensional vortex flows and isotropic turbulent flows. The results reveal that the present algorithm has the highest accuracy among several conventional methods for detecting vorticity and streamlines. Received: 29 January 2001 / Accepted: 7 August 2001     

Investigation of Mizoroki‐Heck coupling polymerization as a catalyst‐transfer condensation polymerization for synthesis of poly(p‐phenylenevinylene)

Mizoroki‐Heck coupling polymerization of 1,4‐bis[(2‐ethylhexyl)oxy]‐2‐iodo‐5‐vinylbenzene ( 1 ) and its bromo counterpart 2 with a Pd initiator for the synthesis of poly(phenylenevinylene) (PPV) was investigated to see whether the polymerization proceeds in a chain‐growth polymerization manner. The polymerization of 1 with ^tBu₃PPd(Tolyl)Br ( 10 ) proceeded even at room temperature when 5.5 equiv of Cy₂NMe (Cy = cyclohexyl) was used as a base, but the molecular weight distribution of PPV was broad. The polymerization of 2 hardly proceeded at room temperature under the same conditions. In the polymerization of 1 , PPV with H at one end and I at the other was formed until the middle stage, and the polymer end groups were converted into tolyl and H in the final stage. The number‐average molecular weight (M_n) did not increase until about 90% monomer conversion and then sharply increased after that, indicating conventional step‐growth polymerization. The occurrence of step‐growth polymerization, not catalyst‐transfer chain‐growth polymerization, may be interpreted in terms of low coordination ability of H‐Pd(II)‐X(^tBu₃P) (X = Br or I), formed in the catalytic cycle of the Mizoroki‐Heck coupling reaction, to π‐electrons of the PPV backbone; reductive elimination of H‐X from this Pd species with base would take place after diffusion into the reaction mixture. © 2014 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2015 , 53, 543–551