分子模型及其在手性识别机理研究上的应用

介绍了近十几年来在色谱手性识别机理研究中的分子模型。在这些模型中,采用量子力学、分子力学和分子动力学等方法计算了手性选择试剂与对映体之间的相互作用,并借助X射线晶体学、核磁共振技术和计算机模拟等技术建立了各种分子模型,研究在手性化合物分离过程中的手性识别机理。     

识别手性六螺烯分子的计算机模拟

手性拆分分子与手性分子间的短程相互作用会形成非对映异构体的接触对,从而导致的立体选择作用很难传统实验方法进行研究^[1]。蛋白质－核酸识别机理和研究表明,计算机模拟可以很好地研究这个问题^[2]。用高分子分离性分子的计算机模拟尚未见报道。     

新型超分子化合物C6H20N2O64P2MO18·8H2O 的晶体结构及电催化作用

多酸是较好的受体分子,当它与有机电子给体作用时,可形成超分子化合物.90年代初这类化合物的研究才刚刚起步.作为一类新型电、磁、非线性光学材料极具开发价值[1].用氨基酸作为电子给体对生物活性研究意义重大[2],有关Keggin结构的超分子化合物已见报道[3],但标题化合物这类手性阴离子[4]与手性氨基酸所形成的杂多化合物及单晶结构尚未见文献报道.     

间尼索地平分子模板聚合物的识别特性1

分子印迹技术是近年来基于分子识别的研究基础上发展起来的一种新的功能性聚合物合成技术.由于具有卓越的分子识别性能,同时具有良好的物理化学稳定性,分子印迹聚合物(MIP)在手性化合物分离、环境分析、生物模拟传感器、模拟酶催化、临床药物分析和膜分离技术等领域展现了良好的应用前景[1-2].间尼索地平药物为河北医科大学药学院首创、且具有自主知识产权的国家一类新药.此药物为手性对映体结构,其(R)-和(S)-间尼索地平的药效、药理、毒理作用不甚明确.为了减少给药量和对人体产生的毒副作用,必须对其进行手性拆分.本论文对间尼索地平分子模板聚合物的制备和性能识别进行了研究,旨在进一步探索分离间尼索地平的新方法.1 实验部分1.1 主要仪器与试剂     

基于杯[4]芳烃的手性识别*

手性杯芳烃是一类重要的主体化合物,在手性识别、对映体分离和不对称催化等方面有着广泛的用途。[4]芳烃引其稳定的构象和易于修饰的特点,成为研究最为广泛的杯芳烃分子,其中大量的文献报道了能够用于对映体识别和检测的手性[4]芳烃。在手性识别的研究中,荧光、紫外和核磁是3中最常见的研究方法,本文根据这3种方法进行分类,综述了近年来以杯[4]芳烃为分子骨架的手性受体的合成及其在手性识别中的应用。最后对手性[4]芳烃的发展前景作了展望。     

原位聚合那格列奈分子印迹手性固定相的分子识别特性研究

以手性药物那格列奈为模板分子，采用原位聚合法制备了具有特定识别性能和手性拆分能力的分子印迹聚合物，并用作高效液相色谱固定相实现了那格列奈与其对映体的手性拆分．通过静态结合方法考察了该聚合物的选择结合能力，并讨论了手性分离过程中的热力学性质．结果表明，原位聚合法制备的棒状聚合物固定相对模板分子及其对映体有很好的手性拆分性能．     

四种选择性β2受体药物在不同酰胺型固定相上的拆分

比较了四种选择性β2受体手性药物氯丙那林、沙丁胺醇、克伦特罗以及丙卡特罗在Whelk-O1、DNB-PG、DNB-Leucine和SH-1等四种刷型酰胺手性固定相上的对映体直接拆分行为,考察了被分离化合物分子结构、固定相分子结构等因素对对映体分离选择性的影响,对药物与固定相分子的手性识别机理进行了初步探讨,给出了药物分...     

新型三唑类抗真菌活性化合物毛细管电泳手性拆分及手性识别机理分子模拟研究

研究了7种新型三唑类抗真菌活性化合物的毛细管电泳法手性分离,利用计算机辅助分子模拟技术研究拆分机理。考察了8种中性环糊精手性添加剂,只有2,6-二甲基-β-环糊精对7种活性化合物都有手性识别能力。在30mmol/L NaH2PO4缓冲液中含2,6-二甲基-β-环糊精30mmol/L,用H3PO4调至pH 2.2,温度20℃,电压20kV,在此条件下7种活性化合物都能达到手性分离,其中4种活性化合物能达到基线分离(Rs>1.5)。应用计算机辅助分子模拟软件Discovery Studio 2.5/Sybyl/Gold模拟2,6-二甲基-β-环糊精与7种活性化合物主客体包结过程,并计算相互结合能,探讨手性识别机理,发现拆分结果与结合能的差异有关,结合能差异越大拆分结果越好。     

分子模型方法在色谱手性分离机理研究上的应用

介绍了计算机辅助的分子模型设计和理论计算方法,综述了近十年来该方法在液相色谱手性分离机理研究中的应用,主要集中在Ｐｉｒｋｌｅ类型和环糊精类型的手性固定相的研究上,随着计算机软件与硬件的发展,这种方法在手性识别机理研究中的应用会更加广泛。     

分子印迹聚合物在毛细管电色谱拆分手性药物中的研究进展

手性药物通过与生物体内生物大分子之间的手性匹配与分子识别来发挥药理作用。两个对映体与体内手性环境相互作用的不同导致每个对映体表现出不同的药理活性、代谢过程、代谢速率及毒性等药代动力学特征。因此发展手性药物的拆分方法,对于手性药物的开发和生产过程的质量监控具有重要意义。分子印迹聚合物（MIPs）是以目标分子作为模板而制备的高分子聚合物,它具有特定的空间分子结构和官能团,对目标分子具有高度的特异性识别能力。基于该特点,MIPs非常适合于手性药物的拆分和纯化。毛细管电色谱（CEC）可同时基于毛细管电泳和液相色谱的分离机理对目标物进行分离,因此具有高分离效率和高选择性的特点。将MIPs材料作为CEC的固定相,可将这两种技术的优势结合,从而实现对手性药物的高效拆分。MIPs材料在1994年首次应用于CEC手性拆分,此后该研究领域开始获得关注和发展。MIPs材料主要通过4种模式在CEC中实现手性拆分,分别是作为开管柱、填充柱和整体柱的固定相以及分离介质中的准固定相。该综述以这4种模式作为分类基准,根据MIPs制备所需的材料和分离对象对其在CEC手性拆分中的应用进行了总结,揭示了MIPs在CEC手性拆分中的潜力,同时评述了这4种模式各自的优势与不足,并对将来MIPs在CEC手性拆分中的发展进行了展望。     

Chiral separation and molecular simulation study of six antihistamine agents on a coated cellulose tri-(3,5-dimethylphenycarbamate) column (Chiralcel OD-RH) and its recognition mechanisms

Enantiomeric separation of six antihistamine agents was first systematically investigated on a cellulose-based chiral stationary phase (CSP), that is, cellulose tris-(3,5-dimethyl phenyl carbamate) (Chiralcel OD-RH), under the reversed-phase mode. Orphenadrine, meclizine, terfenadine, dioxopromethazine, and carbinoxamine enantiomers were completely separated under the optimized mobile phase conditions with resolutions of 5.02, 1.93, 1.68, 1.67, and 1.54, respectively. Mequitazine was partially separated with a resolution of 0.77. The influences of type and concentration of buffer salt, the pH of buffer solution, and the type and ratio of organic modifier on the chiral separation were evaluated and optimized. For a better insight into the enantiorecognition mechanisms, molecular docking was carried out via the Autodock software. The lowest binding energy and the optimal conformations of the analytes/CSP complexes were supplied, and the mechanisms of chiral recognition were determined. According to the results, the key interactions for the chiral recognition of these six analytes on CDMPC were π–π interactions, hydrophobic interactions, hydrogen bond interactions, and some special interactions.     

5-芳基乙内酰脲类化合物QSERR研究

用多元线性回归分析对50个在Pirkle型手性固定相色谱柱上手性拆分的乙内酰脲类化合物进行了QSRR（quantitative structure-rentention relationship）和QSERR（ quantitative-structure enantioselective rentention relationship）研究 .所选的2D和3D描述参数由分子力学和量子化学计算得到.回归结果表明,R和S异构体与识别剂的相互作用的确存在差异.这些方程不仅有助于推测被识别剂和识别剂之间的结合方式,还可以定量的预测结构相近的类似物的拆分可能性,为设计合成新的识别剂和被识别剂都提供了一定的理论依据.     

The Resolution of Enantiomeric Ibuprofen on Chiral Stationary Phases Containing N-Arylcarbamoyl Derivatives of Phenylglycine

A series of fourteen anilide derivatives of ibuprofen were resolved on six chiral stationary phases (CSPs) derived from N-arylcarbamoyl derivatives of (S)-phenylglycine. Excellent chiral resolutions were achieved on these CSPs. The ionic-type CSPs showed better chiral recognition abilities than the corresponding covalent-type CSPs, and the CSP bearing two chiral centers has better performance than the CSPs bearing only one chiral center. The highest separation factor was achieved using the ionic-type CSP bearing two chiral centers for the resolution of the 3,5-dinitroanilide derivative of ibuprofen. This result is better than those reported in literature for the resolution of ibuprofen on the CSPs derived from amino acids, According to the chromatographic behaviors, the hydrogen bonding interaction, the π-π interactions provided by the phenyl groups in CSPs bearing one chiral center, and the phenylethylcarbamoyl moiety in CSPs bearing two chiral centers dominate the chiral recognition.     

Development of novel brush-type chiral stationary phases based on terpenoid selectors: HPLC evaluation and theoretical investigation of enantioselective binding interactions

The terpenoid chiral selectors dehydroabietic acid, 12,14-dinitrodehydroabietic acid and friedelin have been covalently linked to silica gel yielding three chiral stationary phases CSP 1, CSP 2 and CSP 3, respectively. The enantiodiscriminating capability of each one of these phases was evaluated by HPLC with four families of chiral aromatic compounds composed of alcohols, amines, phenylalanine and tryptophan amino acid derivatives and β-lactams. The CSP 3 phase, containing a selector with a large friedelane backbone is particularly suitable for resolving free alcohols and their derivatives bearing fluorine substituents, while CSP 2 with a dehydroabietic architecture is the only phase that efficiently discriminates 1,1′-binaphthol atropisomers. CSP 3 also gives efficient resolution of the free amines. All three phases resolve well the racemates of N-trifluoracetyl and N-3,5-dinitrobenzoyl phenylalanine amino acid ester derivatives. Good enantioseparation of β-lactams and N-benzoyl tryptophan amino acid derivatives was achieved on CSP 1.In order to understand the structural factors that govern the chiral molecular recognition ability of these phases, molecular dynamics simulations were carried out in the gas phase with binary diastereomeric complexes formed by the selectors of CSP 1 and CSP 2 and several amino acid derivatives. Decomposition of molecular mechanics energies shows that van der Waals interactions dominate the formation of the diastereomeric transient complexes while the electrostatic binding interactions are primarily responsible for the enantioselective binding of the (R)- and (S)-analytes. Analysis of the hydrogen bonds shows that electrostatic interactions are mainly associated with the formation of N–H⋯OC enantioselective hydrogen bonds between the amide binding sites from the selectors and the carbonyl groups of the analytes. The role of mobile phase polarity, a mixture of n-hexane and propan-2-ol in different ratios, was also evaluated through molecular dynamics simulations in explicit solvent.     

Enantioseparation and molecular modeling study of eight psychoactive drugs on a coated polysaccharide-based chiral stationary phase

The enantioseparation of eight psychoactive drugs has been firstly performed on a coated cellulose-based chiral stationary phase (Chiralcel OJ-H). To obtain optimum separation conditions, the influences of alcohol modifiers and basic/acidic additives have been studied. As a result, except for the partial separation of oxybutynin enantiomers, the other seven drug enantiomers, including mirtazapine, sulpiride, promethazine, citalopram, oxazepam, donepezil, and cyamemazine, have been completely separated. Additionally, for gaining a better insight into the chiral recognition mechanisms, molecular docking was carried out using the Autodock software. Herein, binding energy and conformations of the chiral stationary phase complexes were provided, and it was found that the distinction in enantiomeric conformation determined the number and strength of intermolecular interactions between analytes and chiral stationary phase which resulted in the difference in binding energies of two enantiomers, and ultimately led to the different migration. These modeling results were in accordance with the observed enantioseparation results in high performance liquid chromatography experiments. At last, chiral separation mechanisms have been discussed in detail, and it has been confirmed that hydrogen bond, π–π, hydrophobic interactions, and some special interactions synergistically contributed to the enantioseparation of psychoactive drugs.     

Elucidation of the chiral recognition mechanism of cinchona alkaloid carbamate-type receptors for 3,5-dinitrobenzoyl amino acids

A cinchona alkaloid having extraordinary chiral discriminatory powers (alpha = 32.6 for dinitrobenzoyl leucine) is developed as a chiral stationary phase (CSP) for chromatography. An explanation of how chiral discrimination takes place is presented. Using a soluble analogue of the CSP, we found that NMR spectrometry indicates that 1:1 complexes exist for both optical isomers interacting with the CSP, that the free base form of the CSP exists in an open/closed ratio of 35/65 but that the protonated, bound-state form is exclusively in the anti-open conformation, and that significant intermolecular NOEs exist for the more stable diastereomeric complex but not for the less stable complex. Stochastic molecular dynamics simulations were carried out in solvents of low and high dielectric. The chromatographic retention orders and free energy differences of analyte binding to CSP were reproduced computationally as were the observed intra- and intermolecular NOEs. Data from the simulation were used to evaluate the intermolecular forces responsible for analyte binding as well as to discern fragments of the CSP doing most of the work of holding the complexes together. The enantiodifferentiating forces and the parts of the CSP most responsible for chiral discrimination are described. Moments of distributions of key dihedral angles and distances between centroids were used to assess the relative rigidity of the competing diastereomeric complexes. Simultaneous multiple-contact ion-pairing, hydrogen bonding, and pi-stacking are possible for the longer retained enantiomer only. An X-ray crystallographic study of the more stable complex confirms the conclusions derived from chromatography, NMR spectroscopy, and molecular modeling.     

New mathematic model for predicting chiral separation using molecular docking: Mechanism of chiral recognition of triadimenol analogues

The purpose of this paper was to study the enantioseparation mechanism of triadimenol compounds by carboxymethylated (CM)‐β‐CD mediated CE. All the enantiomers were separated under the same experimental conditions to study the chiral recognition mechanism using a 30 mM sodium dihydrogen phosphate buffer at pH 2.2 adjusted by phosphoric acid. The inclusion courses between CM‐β‐CD and enantiomers were investigated by the means of molecular docking technique. It was found that there were at least three points (one hydrophobic bond and two hydrogen bonds) involved in the interaction of each enantiomer with the chiral selectors. A new mathematic model has been built up based on the results of molecular mechanics calculations, which could analyze the relationship between the resolution of enantioseparation and the interaction energy in the docking area. Comparing the results of the separation by CE, the established mathematic model demonstrated good capability to predict chiral separation of triadimenol enantiomers using CM‐β‐CD mediated CE.     

Chiral separation of triazole pesticide enantiomers by high performance liquid chromatography

Four triazole enantiomers of diclobutrazol (erythro form) (1), paclobutrazol (erythro form) (2), diniconazole (3) and uniconazole (4) have been separated by high performance liquid chro-matography (HPLC) on chiral stationary phase (CSP) OA-4700. Chromatographic data and a chiral recongnition model are presented for the separation of these pesticide enantiomers. The influence of column temperature and composition of mobile phase have been described.     

Computational study of enantioseparation by amylose tris(3,5‐dimethylphenylcarbamate)‐based chiral stationary phase

The mechanism of chiral separation on amylose tris(3,5‐dimethylphenylcarbamate) is studied with docking simulations of enantiomers by molecular dynamics. All‐atom models of amylose tris(3,5‐dimethylphenylcarbamate) on the modified silica gel surface were constructed for the docking simulations of metalaxyl and benalaxyl. The elution orders and energetic differences were also predicted based on the intermolecular interactions, which were in agreement with the experimental results. The radial distribution function was employed to analyze the structural features of the enantiomer‐chiral stationary phase complex and used to elucidate the mechanism of chiral separation. The separation of metalaxyl and benalaxyl is mainly controlled by the hydrogen bond. And the binding sites had slight differences for the pair of enantiomers, but obvious differences between different chemicals.     

Preparation and chromatographic characteristics of a novel 2,6-dimethyl-β-CD bonded HPLC chiral stationary phase

A novel 2,6-dimethyl-b-CD bonded and silica based HPLC chiral stationary phase（CSP） was prepared.The diphenylmethane diisocyanate（MDI） was applied for the first time in the immobilization of 2,6-dimethyl-b-CD onto the surface of aminized silica gel under mild conditions. The composite materials obtained were used as the CSP for chiral separation processes and this kind of CSP exhibits good enantioselectivity for a variety of chiral compounds under reversed-phase conditions.