左苯丙胺在多巴胺第三受体分子通道中传输分子动力学模拟

左旋苯丙胺(又称左苯丙胺, RAT)在临床上被用于治疗多种病症,作用在中枢神经细胞多巴胺受体上,同时它具有依赖性和成瘾性。为了探讨RAT被用作药物的药理和成瘾机制,本文用分子模拟获得RAT与多巴胺第三受体(D₃R)复合蛋白优化结构,并且采用伞形样本平均力势(PMF)方法和卵磷脂脂质分子模拟生物膜,采用分子动力学模拟获得RAT在D₃R结构中分子通道运动轨迹和自由能变化。RAT通过D₃R结构中的功能分子通道,朝细胞外方向传输运动的自由能变化为91.4 kJ·mol^-1。RAT通过D₃R结构中的保护分子通道,朝细胞双层膜方向传输运动的自由能变化为117.7 kJ·mol^-1。自由能数值表明RAT分子更容易通过D₃R结构中的功能分子通道,发挥其功能作用,增大功能多巴胺分子的释放,导致包括依赖性和成瘾性多种功能效果。研究结果证明RAT被用作药物的药理和成瘾机制与它在多巴胺受体中的分子通道上传输动力学和机制有密切关联。     

血管紧张素转换酶与抑制肽结合模式的分子动力学研究

应用分子模拟方法研究了血管紧张素转换酶(Angiotensin-converting enzyme,ACE)C端结构域(C-domain)与两种抑制肽(RIGLF/AHEPVK)的结合机制,预测了两个体系的结合模式,提出在C-domain-RIGLF中His353,Asp377,Asp453,Phe457,His513,Tyr523和Phe527为RIGLF主要结合残基,而在C-domainAHEPVK中Gln281,His353,Ser355,Glu384,Lys511,His513和Tyr523等残基起关键作用.应用结合自由能计算比较了两个体系的结合能力,结果表明,RIGLF和AHEPVK均与C-domain活性位点残基存在较强作用,且AHEPVK对C-domain的结合能力较强,与实验结果一致.     

白色念珠菌N-肉豆蔻酰基转移酶中药物结合位点的MCSS分析

采用多拷贝同时搜寻方法(MCSS)分析得到了CaNMT活性位点的疏水区域、氢键结合位点和负电性区域. MCSS计算结果显示, CaNMT活性位点有两个疏水性比较强的区域: 一个由Tyr107, Tyr109, Val108, Phe117, Phe123, Ala127, Phe176和Leu337等残基组成; 另一个由Phe115, Phe240和Phe339组成. CaNMT活性位点发现有两个氢键作用区域, 其中Tyr119, His227, Asn392和Leu451是与已有抑制剂的氢键结合位点, Tyr107, Asn175, Thr211和Asp412是新发现的氢键结合位点, 而且在NMT家族中高度稳定, 它们对设计新结构类型的CaNMT抑制剂具有重要作用. Leu451是负电性兼氢键作用位点, 是抑制剂设计时所必需考虑的位点.     

新型卤代3-芳基香豆素的合成及其抗癌活性

以卤代芳基乙酸和2,3,4-三羟基苯甲醛为主要原料,经Perkin缩合和关环反应制得12个含卤素的7,8-二乙酰氧基-3-芳基香豆素化合物（D₁~D₁₂）; D₁~D₁₂经水解反应合成了12个含卤素的7,8-二羟基-3-芳基香豆素化合物（E₁~E₁₂）,除D₂, D₄~D6, E₂, E₄~E₆外均为新化合物,其结构经¹H NMR和MS（EI）表征。采用MTT法研究了D₁~E₁₂对人肺癌细胞株(A549)的体外细胞毒性。结果表明：D₁~E₁₂均表现出不同程度的肿瘤细胞增殖抑制活性（IC₅₀≥192.74 μmol·L^-1）。     

牛视紫红质蛋白质中视黄醛的活性位点

视紫红质蛋白是一个跨膜蛋白, 视黄醛(RET)在该蛋白中的活性结合位点涉及到视觉过程机理, 与一些眼科疾病病理有关. 基于牛视紫红质蛋白1U19的蛋白质晶体结构数据, 采用密度泛函理论的B3LYP方法计算RET-Lys296残基与视黄醛分子周围半径为0.6 nm的空间范围30个氨基酸残基相互作用和结合能. 数值显示1U19蛋白中的残基Glu113、Glu181和Glu122是质子化的RET-Lys296残基的活性结合位点, 结合能分别为-333.38、-205.67和-194.56 kJ·mol-1. 这些氨基酸残基带有一个负电荷, 与质子化的RET-Lys296残基发生强烈的离子静电相互作用. 另外几个残基Ala292、Cys187、Phe293、Pro291以及Trp265等与质子化RET-Lys296残基也有相互吸引作用. 当RET-Lys296残基非质子化, 上述相互作用消失, 促使视黄醛分子与视蛋白分离. 研究发现残基Glu113和Glu181周围各自有一个结晶水分子通过双氢键形式起着稳定作用.     

拟南芥转酮醇酶蛋白AtTKL1的同源建模及与α-三联噻吩结合作用分析

以玉米转酮醇酶(1ITZ)的晶体结构为模板,对拟南芥转酮醇酶(At TKL1)的三维结构进行模拟和优化.利用生物信息学方法,确定其氨基酸结合位点为His143,Gly234,Asn263,Arg434,Ser461,Gln488,Phe515,His539,Asp547和Arg598,催化氨基酸位点为His103和His340.通过分子模拟确定α-三联噻吩与At TKL1的活性口袋可有效结合,且At TKL1的催化位点和结合位点为其与α-三联噻吩结合的关键位点.利用荧光猝灭光谱技术确定At TKL1与α-三联噻吩之间存在结合作用;酶活力检测结果表明加入α-三联噻吩后转酮醇酶蛋白的活性降低,进一步验证了At TKL1与α-三联噻吩之间的相互作用.     

漆酶与酚类模式底物的结合及反应活性的理论研究

通过生物信息学分析、分子动力学模拟及量子化学计算,对21种邻对位取代酚类模式底物与漆酶的结合能力以及反应活性进行了探讨.生物信息学结构比对分析发现漆酶的活性口袋含有Asp/Glu206,Asn/His208,Asn264,Gly392和His458等保守的氨基酸残基(氨基酸残基编号以Trametes versicolor漆酶为例,PDB:1KYA);采用MM-GBSA方法计算了21种酚类模式底物与T.versicolor漆酶的结合自由能.分子力学计算结果表明,漆酶与底物的结合力主要来自Asp206和Asn264等残基与底物分子形成的分子间氢键,并且Phe265残基和酚类底物的芳香环形成π-π相互作用.量子化学计算表明,芳环上取代基的推拉电子效应显著影响协同电子转移的底物去质子化过程,其中推电子能力较强的—NH2,—OH,—OCH3和—CH CHCH3等基团能够明显增强酚羟基反应活性,而吸电子的—CONH2和—Cl则具有相反的效应.     

富勒烯C36及其衍生物C36H2n的量子化学研究

应用密度泛函B₃LYP方法和从头算(abinitio)HF方法,在3-21G理论水平上,对具有C_2v,D_2d,D_3h和D_6h对称性的四种C₃₆异构体以及在保持D_2d,D_3h和D_6h对称性条件下形成的不同氢化物进行了量子化学计算,研究了它们在不同量子态时的分子几何构型和电子结构.结果表明,电子相关效应在C₃₆簇化合物的电子结构中起着重要作用.它们最稳定的结构是C₃₆的³A_2u量子态D_6h异构体,而C₃₆的氢化物是在D_3h异构体的C₂位置等同碳原子上形成的¹A_1'量子态氢化物C₃₆H₁₂.     

苏丹红Ⅱ与肌红蛋白相互作用的分子模拟与实验

用荧光光谱法研究了苏丹红Ⅱ与肌红蛋白(Mb)之间的相互作用, 实验结果表明,二者结合位点数近似为1, 结合常数K=3.84×107L/mol, 有很强的相互作用. 用分子柔性对接技术模拟确定了它们之间的作用位点、作用力类型及相互作用能. 理论计算的结果表明,苏丹红Ⅱ和Mb相互作用的势能为-9419.9 kJ/mol, 静电能为-7468.8 kJ/mol, 范德华能为-1951.0 kJ/mol. 苏丹红Ⅱ与Mb中His64残基形成氢键, 苏丹红Ⅱ也能与疏水氨基酸残基, 如能产生内源荧光的Phe33、Phe43、Phe106 和 Phe138等发生作用, 这与苏丹红Ⅱ能使Mb荧光猝灭的实验结果是一致的.     

β微管蛋白中紫杉醇(Taxol)结合腔的性质分析

采用多拷贝同时搜寻法(MCSS), 并结合现有微管抑制剂的SAR及3D-QSAR对β微管蛋白中Taxol(紫杉醇)结合腔的性质进行了分析. 结构研究结果表明, Taxol结合腔以疏水性质为主, 并指出官能团分布的具体位置: 在Phe270上方(Leu361-Pro272-Leu273-Leu228之间)的弧形区域、Asp26羧基下方及其与Glu22羧基之间、M-loop的中部, 以及Asp224内侧且靠近Arg276的胍基的位置. 而Asp224的内侧又是新提出的结合位点. 研究结果符合现有微管抑制剂的SAR, 为现有抗肿瘤药物的结构改造以及小分子微管抑制剂设计提供了理论依据.     

[Er(C_4H_4O_5)_3]·2NaClO_4·6H_2O晶体中Er~(3+)离子能级的配位场分析

采用点群链R(3)*O*D3*关系标记D3*点群的斯塔克能级。基于双层点电荷配位场(DSCPCF)和经典的简单点电荷配位场(PCF)两种模型,利用自编的计算程序对三角对称(D3)的[Er(C4H4O5)3].2NaC lO4.6H2O晶体中Er3+离子的65个配位场微扰能级进行了理论计算和归属,计算结果与实验能级进行比较,DSCPCF模型得到的均方根偏差(σ)为19.9 cm-1,而PCF模型计算的为25.5 cm-1,表明前者模型更为优越,它是基于实际的配位结构并且仅包含较少的拟合参数。     

Enantioenriched Positive Allosteric Modulators Display Distinct Pharmacology at the Dopamine D1 Receptor

(1) Background: Two first-in-class racemic dopamine D₁ receptor (D₁R) positive allosteric modulator (PAM) chemotypes (1 and 2) were identified from a high-throughput screen. In particular, due to its selectivity for the D₁R and reported lack of intrinsic activity, compound 2 shows promise as a starting point toward the development of small molecule allosteric modulators to ameliorate the cognitive deficits associated with some neuropsychiatric disease states; (2) Methods: Herein, we describe the enantioenrichment of optical isomers of 2 using chiral auxiliaries derived from (R)- and (S)-3-hydroxy-4,4-dimethyldihydrofuran-2(3H)-one (d- and l-pantolactone, respectively); (3) Results: We confirm both the racemate and enantiomers of 2 are active and selective for the D₁R, but that the respective stereoisomers show a significant difference in their affinity and magnitude of positive allosteric cooperativity with dopamine; (4) Conclusions: These data warrant further investigation of asymmetric syntheses of optically pure analogues of 2 for the development of D₁R PAMs with superior allosteric properties.     

硅氮负离子引发六甲基环三硅氧烷开环聚合的动力学研究

以二甲基亚砜(DMSO)或四氢呋喃(THF)作为促进剂,六苯基环三硅氮烷三锂盐(P3NLi)可以引发六甲基环三硅氧烷(D3)进行开环聚合,通过29Si-NMR谱的硅峰面积比例确定了不同反应时间D3的转化率,经过计算得到聚合反应对THF、DMSO、D3、P3NLi的反应级数,并给出了对应的动力学方程.     

STUDY ON INDUCTION OF DIFFERENTIATION OF A HUMAN MEGAKARYOBLASTIC LEUKEMIA CELL LINE (HIMeg) BY 1,25-DIHYDROXYVITAMIN D_3

It is reported that 1,25-dihydroxyvitamin D_3(1,25(OH)_2D_3), a physiological factor, has aninductive effect on the differentiation of a novel human megakaryoblastic leukemia cell line(HIMeg) in vitro. At the concentrations ranging from 10~(-9) to 10~(-6) mol/L, 1,25(OH)_2D_3 showedinhibition of proliferation on HIMeg cells which was demonstrated by count of survivalcells and cloning efficiency. Meanwhile, using light/electron microscopy, stain of cytochem-istry (including immunoenzymatic technique) and flow cytometry, we found that HIMeg cellscould be further induced into more mature cells in megakaryocytic lineage confirmed by aseries of evidence, including the changes of cell morphology/structure and cytochemistry,increased expression of differentiation antigens on the cell surface, and polyploidization.So, it is possible for 1,25(OH)_2D_3 to promote the differentiation of the cells in megakaryo-cytic lineage in vivo and to be used to treat acute megakaryoblastic leukemia and other di-seases with mal     

纳米晶LaAlO3掺Eu3+的复合沉淀法制备及发光性质

以NH₃·H₂O-NH₄HCO₃混合溶液为复合沉淀剂,制备了LaAlO₃:Eu³⁺纳米晶体.通过X射线衍射、扫描电镜和透射电镜对产物进行了表征,用荧光光度计测试了样品的三维荧光光谱、激发光谱和发射光谱.结果表明:前驱沉淀物经800℃焙烧处理2h,制备出球型形貌,颗粒分散性好、尺寸约为40nm的立方相LaAlO₃纳米晶.由三维荧光光谱确定了LaAlO₃:Eu³⁺的最佳监测波长和激发波长,在395nm波长光的激发下观察到纳米LaAlO₃中Eu³⁺的591nm(⁵D₀-⁷F₁)和613nm(⁵D₀-⁷F₂)特征发射谱,磁偶极跃迁⁵D₀-⁷F₁的发射峰强度要比电偶极跃迁⁵D₀-⁷F₂更强,而且这种趋势随着焙烧温度的升高明显增强,说明由该法制备的纳米LaAlO₃中Eu³⁺离子占据的位置具有高的对称性.     

PREPARATION AND FLUORESCENT PROPERTIES OF Eu~(3+)-CONTAINING CORE-SHELL NANOPARTICLES

By using a two-stage soapless emulsion polymerization, four kinds of core-shell nanoparticles have been prepared,which are composed of a polystyrene core having an average diameter of 256 nm and a poly(methyl methacrylate-co-acrylicacid) shell. The transmission electron microscopy (TEM) micrographs and the atomic force microscopy (AFM) imagesevidenced the presence of a core-shell structure. In the infrared spectra, the shift of v_(COOH) to lower wavenumber withincreasing Eu~(3 ) ion content indicates that coordination between the oxygen of the carboxylic group and Eu~(3 ) has occurred.The fluorescence intensity of ~5D_0-~7F_2 transition was observed to reach its maximum with a carboxyl group molar percentageof 40% in the shell and an Eu~(3 )/--COO~- molar ratio of 1:3. The fluorescence intensity ratio of ~5D_0-~7F_2 to ~5D_0-~7F_1 transition reached its maximum with an Eu~(3 )/--COO~- molar ratio of 1:3 for all the four series.     

The Electronic Structure of Dopamine. An ab initio Electrostatic Potential Study of the Catechol Moiety

Electronic properties of dopamine were studied by the ab initio STO-3G MO method. The molecular electrostatic potential (MEP) around the aromatic ring and the catechol group remains practically the same in 3,4-dihydroxytoluene (a model compound) and in neutral dopamine examined in its two extended conformations, namely that found in the crystal (side-chain and aromatic ring almost perpendicular) and the one corresponding to 2-amino-6,7-dihydroxytetralin (6,7-ADTN) (side-chain and aromatic ring almost coplanar). In protonated dopamine and in dopamine hydrochloride, the electrostatic potential of the catechol moiety is overshadowed by the positive charge, but the main features remain discernible. The catechol moiety was examined in its two coplanar conformations containing a ‘flip-flop H-bond’. The electrostatic potential around the catechol moiety is quite complex, with alternating positive and negative maxima. At increasing distances above and away from the catechol moiety, only two peripheral maxima, one negative and one positive, remain perceptible. The ‘flip-flop’ mechanism results in an approximate interchange of these two potential maxima, a fact which tends to level out the structural differences between the α- and β-rotamer of dopamine. Based on these results and on the structure of rigid agonists, some pharmacophoric features of dopamine agonists are proposed.     

B2N2分子结构与性质的理论研究

錋氮(BN)及其团簇分子在材料科学中的重要性而引起广泛关注,BN纳米管、纳米线及其团簇已被合成并在对其结构与性质进行了理论研究[1-7]。BN二聚物包括线性、正方形和棱形BN-BN结构,在MP2水平上的理论预测单重态稳定性为菱形(D2h)大于正方形(D2h)大于线性(C∞v)[8],但作者未对优     

Dopamine and Glucose Sensors Based on Glassy Carbon Electrodes Modified with Melanic Polymers

This work deals with the study of polymers electrogenerated from different catechols at glassy carbon electrodes and the analytical applications of the resulting modified electrodes for dopamine quantification and glucose biosensing. The electropolymerization was performed from a 3.0×10^?3 M catechol solution (catechol, dopamine, norepinephrine, epinephrine or L ‐dopa in a 0.050 M phosphate buffer pH 7.40) by applying 1.00 V for 60 min. The properties of the polymers are very dependent on the nature of the catechol, L ‐dopa being the best. Glassy carbon electrodes modified with melanic polymers electrogenerated from L ‐dopa and norepinephrine were found to be suitable for dopamine determinations in flow systems, although the behavior was highly dependent on the nature of the monomer. Detection limits of 5.0 nM dopamine and interferences of 9.0 and 2.6% for 5.0×10^?4 M ascorbic acid and 5.0×10^?5 M dopac, respectively, were obtained at the glassy carbon electrode modified with a melanin‐type polymer generated from L ‐dopa (using 1.0×10^?3 M AA in the measurement solution). The advantages of using a melanin‐type polymer generated from dopamine to improve the selectivity of glucose biosensors based on carbon paste electrodes containing Pt and glucose oxidase (GOx) are also discussed. The resulting bioelectrodes combines the high sensitivity of metallized electrodes with the selectivity given by the polymeric layer. They exhibit excellent performance for glucose with a rapid response (around 10 seconds per sample), a wide linear range (up to 2.5×10^?2 M glucose), low detection limits (143 μM) and a highly reproducible response (R.S.D of 4.9%). The bioelectrodes are highly stable and almost free from the interference of large excess of easily oxidizable compounds found in biological fluids, such as ascorbic acid (AA), uric acid (UA) and acetaminophen.     

多巴胺在dsDNA/Ni2+/聚邻氨基酚修饰碳糊电极上的伏安行为

通过电化学聚合法在碳糊电极上共聚制备了聚邻氨基酚/Ni2+膜(Ni2+/P-OAP/CPE), 研究了膜的伏安特性, 并制成dsDNA修饰电极, 通过电化学和紫外光谱法进行表征. 将dsDNA/Ni2+/P-OAP/CPE电极应用于多巴胺的电催化氧化, 同时将该方法用于盐酸多巴胺针剂的测定, 亦获得了满意的结果.