Kinetics and mechanism of electron-induced splitting of a cyclobutane pyrimidine dimer with or without an electron acceptor

DNA repair has received heightened attention in recent years as ozone depletion threatens to significantly increase DNA damage by UVB radiation[1—6]. The major lesions formed in DNA by this radiation are cis-syn cyclobutane pyrimidine dimers, which are created by the linkage of two neighboring pyrimidine bases in DNA via C5-C5 and C6-C6 atoms by [2+2] cycloaddition[2,5—8]. This potentially lethal or mutagenic damage can be repaired either by the removal of the damaged bases by excisio…     

Fast electron transfer repair of oxidizing OH adduct of dGMP by chlorogenic acid

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Involvement of electron transfer in the photoreaction of zebrafish Cryptochrome-DASH

Photoreaction of a blue-light photoreceptor Cryptochrome-DASH (Cry-DASH), a new member of the Cryptochrome family, from zebrafish was studied by UV-visible absorption spectroscopy in aqueous solutions at 293 K. Zebrafish Cry-DASH binds two chromophores, a flavin adenine dinucleotide (FAD) and a N5,N10-methenyl-5,6,7,8-tetrahydrofolate (MTHF) noncovalently. The bound FAD exists in the oxidized form (FAD(ox)) in the dark. Blue light converts FAD(ox) to the neutral radical form (FADH*). Formed FADH* is transformed to the fully reduced form FADH(2) (or FADH(-)) by successive light irradiation, or reverts to FAD(ox). FADH(2) (or FADH(-)) reverts to FADH* or possibly to FAD(ox) directly. The effect of dithiothreitol suggests a possible electron transfer between FAD in zebrafish Cry-DASH and reductants in the external medium. This is the first report on the photoreaction pathway and kinetics of a vertebrate Cry-DASH family protein.     

Effect of Molecular Interactions on Electron‐Transfer and Antioxidant Activity of Bis(alkanol)selenides: A Radiation Chemical Study

Understanding electron‐transfer processes is crucial for developing organoselenium compounds as antioxidants and anti‐inflammatory agents. To find new redox‐active selenium antioxidants, we have investigated one‐electron‐transfer reactions between hydroxyl (^.OH) radical and three bis(alkanol)selenides (SeROH) of varying alkyl chain length, using nanosecond pulse radiolysis. ^.OH radical reacts with SeROH to form radical adduct, which is converted primarily into a dimer radical cation (>Se∴Se<)⁺ and α‐{bis(hydroxyl alkyl)}‐selenomethine radical along with a minor quantity of an intramolecularly stabilized radical cation. Some of these radicals have been subsequently converted to their corresponding selenoxide, and formaldehyde. Estimated yield of these products showed alkyl chain length dependency and correlated well with their antioxidant ability. Quantum chemical calculations suggested that compounds that formed more stable (>Se∴Se<)⁺, produced higher selenoxide and lower formaldehyde. Comparing these results with those for sulfur analogues confirmed for the first time the distinctive role of selenium in making such compounds better antioxidants.     

Addition-elimination in the reaction of alpha-hydroxyalkyl radicals with 3,5-pyridinedicarboxylic acid and nicotinic acid: example of inner sphere organic electron transfer

Reactions of alpha-hydroxyalkyl radicals with 3,5-pyridinedicarboxylic acid (3,5-PDCA) and nicotinic acid (NA) were studied at appropriate pHs in aqueous solutions by pulse radiolysis technique. At pH 1, CH(3)C*HOH and *CH(2)OH radicals were found to react with 3,5-PDCA by rate constants of 2.2 x 10(9) and 5.1 x 10(8) dm(3) mol(-1) s(-1), respectively, giving radical adduct species. The adduct species formed in the reaction of CH(3)C*HOH radicals with 3,5-PDCA underwent unimolecular decay (k = 9.8 x 10(4) s(-1)) giving pyridinyl radicals. Reaction of (CH(3))(2)C*OH, CH(3)C*HOH, and *CH(2)OH radicals with NA at pH 3.3 gave the adduct species which subsequently decayed to the pyridinyl radicals. At pH 1, wherein NA is present in the protonated form, (CH(3))(2)C*OH radicals directly transfer electrons to NA, whereas CH(3)C*HOH and *CH(2)OH radicals react with higher rate constants compared with those at pH 3.3, initially giving the adduct species which subsequently undergo elimination reaction giving pyridinyl radicals. Reactions of alpha-hydroxyalkyl radicals with 3,5-pyridinedicarboxylic acid and nicotinic acid are found to proceed by an addition-elimination pathway that provides one of the few examples of organic inner sphere electron-transfer reactions. Rate constant for the addition reaction as well as rate of elimination varies with the reduction potential of alpha-hydroxyalkyl radicals.     

Hydrogen peroxide and dioxygen activation by dinuclear copper complexes in aqueous solution: hydroxyl radical production initiated by internal electron transfer

Dinuclear Cu(II) complexes, CuII2Nn (n = 4 or 5), were recently found to specifically cleave DNA in the presence of a reducing thiol and O2 or in the presence of H2O2 alone. However, CuII2N3 and a closely related mononuclear Cu(II) complex exhibited no selective reaction under either condition. Spectroscopic studies indicate an intermediate is generated from CuII2Nn (n = 4 or 5) and mononuclear Cu(II) solutions in the presence of H2O2 or from CuI2Nn (n = 4 or 5) in the presence of O2. This intermediate decays to generate OH radicals and ligand degradation products at room temperature. The lack of reactivity of the intermediate with a series of added electron donors suggests the intermediate discharges through a rate-limiting intramolecular electron transfer from the ligand to the metal peroxo center to produce an OH radical and a ligand-based radical. These results imply that DNA cleavage does not result from direct reaction with a metal-peroxo intermediate but instead arises from reaction with either OH radicals or ligand-based radicals.     

Antioxidant activity of trans-resveratrol toward hydroxyl and hydroperoxyl radicals: a quantum chemical and computational kinetics study

In this work, we have carried out a systematic study of the antioxidant activity of trans-resveratrol toward hydroxyl ((?)OH) and hydroperoxyl ((?)OOH) radicals in aqueous simulated media using density functional quantum chemistry and computational kinetics methods. All possible mechanisms have been considered: hydrogen atom transfer (HAT), proton-coupled electron transfer (PCET), sequential electron proton transfer (SEPT), and radical adduct formation (RAF). Rate constants have been calculated using conventional transition state theory in conjunction with the Collins-Kimball theory. Branching ratios for the different paths contributing to the overall reaction, at 298 K, are reported. For the global reactivity of trans-resveratrol toward (?)OH radicals, in water at physiological pH, the main mechanism of reaction is proposed to be the sequential electron proton transfer (SEPT). However, we show that trans-resveratrol always reacts with (?)OH radicals at a rate that is diffusion-controlled, independent of the reaction pathway. This explains why trans-resveratrol is an excellent but very unselective (?)OH radical scavenger that provides antioxidant protection to the cell. Reaction between trans-resveratrol and the hydroperoxyl radical occurs only by phenolic hydrogen abstraction. The total rate coefficient is predicted to be 1.42 × 10(5) M(-1) s(-1), which is much smaller than the ones for reactions of trans-resveratrol with (?)OH radicals, but still important. Since the (?)OOH half-life time is several orders larger than the one of the (?)OH radical, it should contribute significantly to trans-resveratrol oxidation in aqueous biological media. Thus, trans-resveratrol may act as an efficient (?)OOH, and also presumably (?)OOR, radical scavenger.     

Pulse radiolysis of 4,4'-bipyridyl aqueous solutions at elevated temperatures: spectral changes and reaction kinetics up to 400 degrees C

The spectral changes as well as the reaction kinetics of the transient species of 4,4'-bipyridyl (4,4'-bpy) have been experimentally investigated by pulse radiolysis techniques up to 400 degrees C. The results show that the transient species such as OH adduct 4,4'-bpyOH*, monoprotonated electron adduct 4,4'-bpyH*, and doubly protonated electron adduct 4,4'-bpyH2+* have 15-20 nm blue shifts from room temperature to 400 degrees C. For a deaerated neutral solution of 4,4'-bpy in the presence of tert-butyl alcohol, ethanol, or NaCOOH, the doubly protonated electron adduct is the main transient species at room temperature. But at temperatures > 350 degrees C, a monoprotonated form, the N-hydro radical 4,4'-bpyH*, becomes predominant. Interestingly, at room temperature, CO2-* could not efficiently react with 4,4'-bpy, but the reaction was accelerated with increasing temperature; at 350 degrees C, this reaction completed within 2 mus. Using an alkaline solution (pH = 11.5) of 4,4'-bpy in the presence of tert-butyl alcohol, we studied the N-hydro radical 4,4'-bpyH* from room temperature to 400 degrees C at 25 MPa. An estimation of the temperature-dependent G(e(aq)-) at 25 MPa agrees with our previous result with methyl viologen as a scavenger.     

Radical-based destruction of nitramines in water: kinetics and efficiencies of hydroxyl radical and hydrated electron reactions

In support of the potential use of advanced oxidation and reduction process technologies for the removal of carcinogenic nitro-containing compounds in water reaction rate constants for the hydroxyl radical and hydrated electron with a series of low molecular weight nitramines (R(1)R(2)-NNO(2)) have been determined using a combination of electron pulse radiolysis and transient absorption spectroscopy. The hydroxyl radical reaction rate constant was fast, ranging from 0.54-4.35 × 10(9) M(-1) s(-1), and seen to increase with increasing complexity of the nitramine alkyl substituents suggesting that oxidation primarily occurs by hydrogen atom abstraction from the alkyl chains. In contrast, the rate constant for hydrated electron reaction was effectively independent of compound structure, (k(av) = (1.87 ± 0.25) × 10(10) M(-1) s(-1)) indicating that the reduction predominately occurred at the common nitramine moiety. Concomitant steady-state irradiation and product measurements under aerated conditions also showed a radical reaction efficiency dependence on compound structure, with the overall radical-based degradation becoming constant for nitramines containing more than four methylene groups. The quantitative evaluation of these efficiency data suggest that some (～40%) hydrated electron reduction also results in quantitative nitramine destruction, in contrast to previously reported electron paramagnetic measurements on these compounds that proposed that this reduction only produced a transient anion adduct that would transfer its excess electron to regenerate the parent molecule.     

气相中双取代苯在丙酮离子体系中的加合反应研究

研究了11双取代苯在丙酮离子体系中的离子－分子反应特性及加合离子的碎裂反应特性,发现推电子基有利于加合反应的发生而吸电子基不利于加合反应的发生。双取代异构体的加合产物相对强度可以反映出它们取代基的位置及其性质的差异。邻苯二胺与乙酰基离子形成的加合离子在碎裂反应过程中可以发生与液相中胺的还原烷基化反应相类似的碎裂反应。     

Triplet excited states and radical intermediates formed in electron pulse radiolysis of amino-substituted fluorenones

Electron pulse radiolysis of four differently substituted amino derivatives of fluorenone, namely, 1-amino-, 2-amino- 3-amino-, and 4-aminofluorenone, has been carried out to study the effect of structure on the spectroscopic and kinetic characteristics of the triplet excited states as well as the transient free radical intermediates formed under reducing and oxidizing conditions. The triplet states of these compounds have been generated in benzene by pulse radiolysis and in other solvents by flash photolysis technique and their spectral and kinetic properties have been investigated. Hydrated electron (e_aq⁻) has been found to react with these fluorenone derivatives to form the anion radical species with a diffusion-controlled rate constant. The spectral and kinetic properties of the transient ketyl and anion radicals have been studied by generating them in aqueous solutions of suitable pH. The pK_a values of ketylanion radical equilibria are in the range of 6.8–7.7 for these derivatives. The oxidized species have been generated by reaction with the azide radical. Hydrogen atom adducts as well as the cation radicals of these derivatives have also been generated by pulse radiolysis and characterized.     

On the direct scavenging activity of melatonin towards hydroxyl and a series of peroxyl radicals

The reactions of melatonin (MLT) with hydroxyl and several peroxyl radicals have been studied using the Density Functional Theory, specifically the M05-2X functional. Five mechanisms of reaction have been considered: radical adduct formation (RAF), Hydrogen atom transfer (HAT), single electron transfer (SET), sequential electron proton transfer (SEPT) and proton coupled electron transfer (PCET). It has been found that MLT reacts with OH radicals in a diffusion-limited way, regardless of the polarity of the environment, which indicates that MLT is an excellent OH radical scavenger. The calculated values of the overall rate coefficient of MLT + ˙OH reaction in benzene and water solutions are 2.23 × 10(10) and 1.85 × 10(10) M(-1) s(-1), respectively. MLT is also predicted to be a very good ˙OOCCl(3) scavenger but rather ineffective for scavenging less reactive peroxyl radicals, such as alkenyl peroxyl radicals and ˙OOH. Therefore it is concluded that the protective effect of MLT against lipid peroxidation does not take place by directly trapping peroxyl radicals, but rather by scavenging more reactive species, such as ˙OH, which can initiate the degradation process. Branching ratios for the different channels of reaction are reported for the first time. In aqueous solutions SEPT was found to be the main mechanism for the MLT + ˙OH reaction, accounting for about 44.1% of the overall reactivity of MLT towards this radical. The good agreement between the calculated and the available experimental data, on the studied processes, supports the reliability of the results presented in this work.     

Elucidation of the electron transfer reduction mechanism of anthracene endoperoxides

The homogeneous and heterogeneous reductions of the endoperoxides 9,10-diphenyl-9,10-epidioxyanthracene (DPA-O2) and 9,10-dimethyl-9,10-epidioxyanthracene (DMA-O2) were investigated, and they were found to undergo a dissociative electron-transfer reduction of the O-O bond to yield a distonic radical anion, with no evidence for C-O bond dissociation. A number of thermochemical parameters for each were determined using Savéant's model for dissociative electron transfer (ET), including E degrees, DeltaG(o)++, and bond dissociation energies. The products of the ET are dependent on the mode of reduction, namely heterogeneous or homogeneous, and on the electrode potential or standard potential of the homogeneous donor, respectively. The dissociative reduction of DMA-O2 under heterogeneous and homogeneous conditions yields the corresponding 9,10-dihydroxyanthracene DMA-(OH)2, quantitatively, in an overall two-electron process. In the case of DPA-O2, ET reduction also yields the corresponding 9,10-dihydroxyanthracene DPA-(OH)2 from reduction of the distonic radical anion, but in competition with this reduction, an O-neophyl-type rearrangement occurs that generates a carbon radical with a minimum rate constant of 5.9 x 10(10) s(-1). In the presence of a sufficiently reducing medium, the carbon-centered radical is reduced (E degrees = -0.85 V vs SCE) and ultimately yields 9-phenoxy-10-phenyl anthracene (PPA). The observation of this product is remarkable. In the heterogeneous ET, the yield of DPA-(OH)2/PPA is 97:3 and allows an estimate of the rate constant for ET to the distonic radical anion. In homogeneous reductions, the O-neophyl rearrangement is quantitative, but the yield of PPA depends on the redox properties of the donor. A unified mechanism of reduction of DPA-O2 is presented to account for these observations.     

Reaction of the hydroxyl radical with phenol in water up to supercritical conditions

The rate constants for the reactions of phenol with the hydroxyl radical (OH*) in water have been measured from room temperature to 380 degrees C using electron pulse radiolysis and transient absorption spectroscopy. The reaction scheme designed to fit the data shows the importance of an equilibrium, giving back reactants (OH* radical and phenol) from the dihydroxycyclohexadienyl radical formed by their reaction, and the non-negligible contribution of the hydroxycyclohexadienyl radical absorption from H* atom addition. The accuracy of the reaction scheme and the reaction rate constants determined from it have been determined by the analysis of two different experiments, one under pure N2O atmosphere and the second under a mixture a N2O and O2. We report reaction rates for the H* and OH* radical addition to phenol, the formation of phenoxyl, the second-order recombination, the reaction of dihydroxycyclohexadienyl with O2, and the decay of the peroxyl adduct. Nearly all of the reaction rates deviate strongly from Arrhenius behavior.     

Ionization of amino-, thio- and hydroxy-naphtalenes via free (unhindered) electron transfer

The electron transfer from various monosubstituted naphthyl derivatives (naphtols, NpOH; naphtylamines, NpNH2; and thionaphtols, NpSH) to parent n-BuCl radical cations was studied by means of pulse radiolysis. The experiments reveal the synchronous and direct formation of two types of transients: the metastable solute radical cation (NpXH(*+), X = heteroatom) and the corresponding heteroatom-containing radical (NpX(*)) in comparable amounts. This is explained in terms of the free (unhindered) electron transfer in nonpolar solvents, which is a bimolecular process reflecting femtosecond time scale events of intramolecular dynamic motions accompanied by significant changes of the electron distribution within the donor molecule.     

Competitive conversions of carbonyl-containing methanofullerenes induced by electron transfer

The electrochemical reduction of carbonyl-containing methanofullerenes is studied by methods of cyclic voltammetry and ESR with in situ electrolysis in the environment of 0.1 M Bu₄NBF₄ in o-dichlorobenzene-dimethylformamide (3:1 by volume). It is shown that the one-electron transfer onto the fullerene sphere of these compounds induces opening of the three-membered cycle, which leads to processes of retrocyclopropanation, transfer of the adduct onto the fullerene sphere of another molecule with the formation of bismethanofullerenes, and transformation into fullerodihydrofuran. The totality of competitive processes and the balance between these is defined by the nature of substituents at the exocarbon atom and the experimental conditions. The opening process is interpreted as the intramolecular electron transfer from the fullerene sphere onto the three-membered cycle.     

Radical identification by liquid chromatography/thermospray mass spectrometry

Radical adducts of 5,5-dimethyl-1-pyrroline N-oxide (DMPO) with hydroxyl, methanol-derived, and ethanol-derived radicals were detected by a combination of liquid chromatography with either electron paramagnetic resonance or thermospray mass spectrometry (LC/EPR or LC/TSP-MS) in the Fenton system (with methanol or ethanol). One radical adduct was observed in the reaction of DMPO with the hydroxyl radical or the methanol-derived radical, while two adducts were detected in the reaction of DMPO with ethanol-derived radicals. The LC/TSP-MS spectra showed quasi-molecular ions [M + H]+ at m/z 146 and m/z 160 for the methanol-derived and ethanol-derived radical adducts, respectively, and an apparent molecular ion M+ at m/z 130 for the hydroxyl radical adduct. Use of methyl-D3 alcohol (CD3OH) and ethyl-D5 alcohol (CD3CD2OH) indicated that carbon-centered radicals are formed. Experiments with partially deuterated ethanol (CD3CH2OH and CH3CD2OH) indicated that the two adducts observed in the reaction of DMPO with ethanol-derived radicals correspond to the two diastereomeric adducts of DMPO with the alpha-hydroxyethyl free radical.     

Pulse radiolysis studies on reactions of hydroxyl radicals with selenocystine derivatives

Reactions of hydroxyl radicals (*OH) with selenocystine (SeCys) and two of its analogues, diselenodipropionic acid (SeP) and selenocystamine (SeA), have been studied in aqueous solutions at pHs of 1, 7, and 10 using the pulse radiolysis technique coupled with absorption detection. All of these diselenides react with *OH radicals with rate constants of approximately 10(10) M(-1) s(-1), producing diselenide radical cations ( approximately 1-5 micros after the pulse), with an absorption maximum at 560 nm, by elimination of H(2)O or OH(-) from hydroxyl radical adducts. Assignment of the 560 nm band to the diselenide radical cation was made by comparing the transient spectra with those produced upon reaction of diselenides with specific one-electron oxidants, Cl(2)(*-) (pH 1) and Br(2)(*-) radicals (pHs of 7 and 10). SeP having a carboxylic acid functionality showed quantitative conversion of hydroxyl radical adducts to radical cations. The compounds SeCys and SeA, having an amino functional group, in addition to the radical cations, produced a new transient with lambda(max) at 460 nm, at later time scales ( approximately 20-40 micros after the pulse). The rate and yield of formation of the 460 nm band increased with increasing concentrations of either SeCys or SeA. In analogy with similar studies reported for analogous disulfides, the 460 nm transient absorption band has been assigned to a triselenide radical adduct. The one-electron reduction potentials of the compounds were estimated to be 0.96, 1.3, and 1.6 V versus NHE, respectively, for SeP, SeCys, and SeA at pH 7. From these studies, it has been concluded that the electron-donating carboxylic acid group decreases the reduction potential and facilitates quantitative conversion of hydroxyl radical adducts to radical cations, while the electron-withdrawing NH(3)(+) group not only increases the reduction potential but also leads to fragmentation of the hydroxyl radical adduct to selenyl radicals, which are converted to triselenide radical adducts.     

Ion/molecule reactions of cation radicals formed from protonated polypeptides via gas-phase ion/ion electron transfer

Cation radicals formed via gas-phase electron transfer to multiply protonated polypeptides have been found to react with molecular oxygen. Such cation radicals are of interest within the context of electron transfer dissociation, a phenomenon with high utility for the characterization of peptide and protein primary structures. Most of the cation radicals show the attachment of O(2) under room temperature storage conditions in an electrodynamic ion trap. At higher temperatures and under conditions of collisional activation, the oxygen adduct species lose O(2), HO(*), or HO(2)(*), depending upon the identity of the side chain at the radical site. The fragments containing the C-terminus, the so-called z-ions, which are predominantly radical species, engage in reactions with molecular oxygen. This allows for the facile distinction between z-ions and their complementary even-electron c-ion counterparts. Such a capability has utility in protein identification and characterization via mass spectrometry. Intact electron transfer products also show oxygen attachment. Subsequent activation of such adducts show dissociation behavior very similar to that noted for z-ion adducts. These observations indicate that ion/radical reactions can be used to probe the locations of radical sites in the undissociated electron transfer products as well as distinguish between c- and z-type ions.     

Kinetics and mechanisms of the reactions of hydroxyl radicals and hydrated electrons with nitrosamines and nitramines in water

Absolute rate constants for hydroxyl radical, *OH, and hydrated electron, e(aq)(-), reactions with low-molecular-weight nitrosamines and nitramines in water at room temperature were measured using the techniques of electron pulse radiolysis and transient absorption spectroscopy. The bimolecular rate constants obtained, k (M(-1) s(-1)), for e(aq)(-) and *OH reactions, respectively, were as follows: methylethylnitrosamine, (1.67 +/- 0.06) x 10(10) and (4.95 +/- 0.21) x 10(8); diethylnitrosamine, (1.61 +/- 0.06) x 10(10) and (6.99 +/- 0.28) x 10(8); dimethylnitramine, (1.91 +/- 0.07) x 10(10) and (5.44 +/- 0.20) x 10(8); methylethylnitramine, (1.83 +/- 0.15) x 10(10) and (7.60 +/- 0.43) x 10(8); and diethylnitramine, (1.76 +/- 0.07) x 10(10) and (8.67 +/- 0.48) x 10(8), respectively. MNP/DMPO spin-trapping experiments demonstrated that hydroxyl radical reaction with these compounds occurs by hydrogen atom abstraction from an alkyl group, while the reaction of the hydrated electron was to form a transient radical anion. The latter adduct formation implies that the excess electron could subsequently be transferred to regenerate the parent chemical, which would significantly reduce the effectiveness of any free-radical-based remediation effort on nitrosamine/nitramine-contaminated waters.