Gas-phase and solution conformations of selected dimeric structural units of heparin

The molecular structure of four dimeric units (D-E, E-F, F-G, and G-H) of the DEFGH structural unit of heparin, their anionic forms, and their sodium salts have been studied using the B3LYP/6-31+G(d) method. The optimized geometries indicate that the most stable structure of these dimeric units in neutral state is stabilized via "bifurcated" sodium bonds. The equilibrium structure of the biologically active anionic forms of the glycosaminoglycans studied changed considerably in a water solution. The stable-energy conformations around glysosidic bonds found for the individual dimeric species investigated are in agreement with the available experimental structural data for the structurally related heparin-derived oligosaccharides.     

由分子间氢键导致的丝素构象转变的FT-IR研究

用FT－IR研究发现，在丙烯腈与丙烯酸甲酯的共聚物（PANMA）与聚L-丙氨酸（PLAL）的共混体系中，丝素（SF）与PANMA的共混体系及SF与聚丙烯酸钠（NA）的共混体系中，含有羰基或其它极性基团的高分子与SF形成强弱不等的氢键．由于氢键的形成,使SF分子不得不调整自身的构象，从而引起其构象转变．讨论了可能的分子间氢键的结构．     

Comparison of the conformational stability of the non-native alpha-helical intermediate of thiol-modified beta-lactoglobulin upon interaction with sodium n-alkyl sulfates at two different pH

Bovine beta-lactoglobulin assumes a dimeric native conformation at neutral pH, while the conformation at pH 2 is monomeric but still native. beta-lactoglobulin has a free thiol at Cys121, which is buried between the beta-barrel and the C-terminal major or alpha-helix. This thiol group was specifically reacted with DTNB (5,5'-dithiobis(2-nitrobenzoic acid)) at pH 7.5 and 2, producing a modified beta-lactoglobulin containing a mix disulfide bond with 5-thio-2-nitrobenzoic acid (TNB). beta-Lactoglobulin is a predominantly beta-sheet protein, although it has a markedly high intrinsic preference for alpha-helical structure. The formation of non-native alpha-helical intermediate of thiol modified beta-lactoglobulin (TNB-beta-LG) was induced by n-alkyl sulfates including sodium octyl sulfate, SOS; sodium decyl sulfate, SDeS; sodium dodecyl sulfate, SDS; and sodium tetradecyl sulfate, STS at pH 7.5 and 2. The conformation and stability of non-native alpha-helical intermediate (alphaI) state of TNB-beta-LG were studied by circular dichroism (CD), fluorescence and differential scanning calorimetry (DSC) techniques. The effect of n-alkyl sulfates on the structure of alphaI state at both pH was utilized to investigate the contribution of hydrophobic interactions to the stability of alphaI intermediate. The present results suggest that the folding reaction of beta-LG follows a non-hierarchical mechanism and hydrophobic interactions play important roles in stabilizing the native state of beta-LG at pH 2 with more positive charges repulsion than at pH 7.5. Then TNB-beta-LG will become a useful model to analyze the conformation and stability of the intermediate of protein folding.     

Solvent dependence of PII conformation in model alanine peptides

Alanine residues in two model peptides, the pentapeptide AcGGAGGNH(2) and the 11mer AcO(2)A(7)O(2)NH(2), have been reported to have substantial PII conformation in water. The PII structure in both peptides is sensitive to solvent. In the presence of the organic solvent TFE, the conformation of the pentamer changes from PII to internally H-bonded gamma or beta turns, while the chain with seven alanines forms alpha helix. The PII structure in the 11mer is more stable than that in the shorter peptide as the TFE concentration increases. For the pentamer, a comparison of short-chain aliphatic alcohols to water shows that the PII content decreases in the order water > methanol > ethanol > 2-propanol, linearly according to empirical scales of solvent polarity. Thus, depending on the extent of local solvation as folding progresses, the peptide backbone as modeled by alanine oligomers shifts from PII to internally H-bonded (gamma or beta turn) conformations and to alpha helix in longer segments. On the other hand, the PII content of AcO(2)A(7)O(2)NH(2) increases significantly in the presence of guanidine, as does that of oligoproline peptides, while detergent sodium dodecyl sulfate (SDS) favors alpha helix in this peptide. The shorter peptide does not show a parallel increase in PII with guanidine.     

酶联免疫分析法探测Cry1Ab蛋白在不同介质中的构象变化

采用酶联免疫分析（ELISA）方法,根据构象变化后的蛋白与抗体结合能力下降从而导致ELISA测定值降低的原理,探测了转cry1Ab基因水稻表达的Cry1Ab蛋白在不同溶液介质中的热致构象变化行为,以及不同有机溶剂及溶液pH值对该蛋白构象变化的影响程度。实验表明,Cry1Ab蛋白在不同条件下的构象变化程度可以灵敏地通过ELISA方法检测。在不同的介质中,CrylAb蛋白的热致构象变化程度不同。在Na2SO4介质中,该蛋白具有较高的热稳定性;SDS的存在,可以促进该蛋白的构象变化。常温下,25％（V／V）的有机溶剂乙腈、异丙醇、甲醇、乙醇均能使该蛋白的构象发生转变,其中以乙腈最为显著。醇类溶剂对Cry1Ab蛋白的构象影响程度随疏水性增大而增大;溶液pH值也对该蛋白的构象变化产生影响。pH在8-10之间,该蛋白构象能保持稳定;酸或过碱性的溶液均能使蛋白构象偏离原始状态,从而引起ELISA测定值的降低。另外,腐殖酸能在一定时间内保持Cry1Ab蛋白构象的稳定性。     

Activity and structural changes of mushroom tyrosinase induced by n-alkyl sulfates

Catecholase activity and structural changes of mushroom tyrosinase (MT) were studied in the presence of some n-alkyl sulfate derivatives. Experiments showed that MT reached its optimal activity in the presence of 1.5, 0.6, and 0.2 mM of sodium n-octyl sulfate (SOS), sodium n-dodecyl sulfate (SDS) and sodium n-tetradecyl sulfate (STS), respectively. Native and incubated MT with the n-alkyl sulfates were also investigated from structural point of view by far-UV circular dichroism (CD) and intrinsic fluorescence spectroscopy. At the above mentioned concentrations of SOS, SDS, and STS no change in the secondary structure of MT was observed. However, changes in the tertiary structure of the enzyme due to the presence of n-alkyl sulfates were obvious. Results of this research indicate that n-alkyl sulfate with longer chain induces greater conformational changes in MT, hence, can activate it at lower concentrations.     

Effect of amphiphilic molecules upon chromatic transitions of polydiacetylene vesicles in aqueous solutions

Effect of amphiphilic molecules upon the chromatic transitions of polymerized 10,12-pentacosadiynoic acid (PCDA) vesicles in aqueous solutions was reported. The colorimetric response of polymerized PCDA vesicles for 1-pentanol is higher than that for ethanol due to more hydrophobic property of 1-pentanol. The colorimetric response of polymerized PCDA vesicles for sodium dodecyl sulfate (SDS) and Triton X-100 is lower than that for cetyltrimethylammonium bromide (CTAB). The strong ability of CTAB to induce chromatic transition of the vesicles is related to the positively charged headgroups of CTAB, which favors approach of CTAB to the negatively charged carboxylate groups at the vesicle surface. The insertion of alkyl chain of CTAB into the hydrophobic domain perturbs the conformation of the conjugated polymer backbone and induces color change of polydiacetylene vesicles. For a series of alkylamine hydrochloric salts, the longer the alkyl chain, the stronger the ability of alkylamine to induce chromatic transition of polydiacetylene vesicles.     

Spin-label study of the conformational states of polypeptide models of histones

The conformational states of the regular polypeptides (Gly-Lys-Gly)_n, (Ala-Orn-Gly)_n, and (Ala-Orn-Ala)_n have been studied by the spin-label method. Their behavior in solutions of guanidine hydrochloride and urea and in solutions of salts of bivalent metals does not contradict the presence of an extended levohelical conformation in their polypeptide chains. In CaCl₂ (5 N) solutions the polypeptides exhibit aggregation properties. A study of the behavior of the poly peptide at these temperatures has shown that with a rise in temperature there is a monotonic change in the structures of the polypeptide chains that is characteristic for a conformation of the polyproline-II type. Differences have been observed in the behavior of glycine-and alanine-containing polypeptides in the presence of sodium dodecyl sulfate with a change in the temperature.V. I. Nikitin Institute of Chemistry of the Academy of Sciences of the Tadzhik SSR, Dushanbe. Translated from Khimiya Prirodnykh Soedinenii, No. 2, pp. 218–222, March–April, 1986.     

Esterification of bagasse cellulose with metal salts as efficient catalyst in mechanical activation-assisted solid phase reaction system

The present study focused on investigating the catalytic mechanism of metal salts (sodium hypophosphite, sodium bisulfate and ammonium ferric sulfate) for esterification of bagasse cellulose carried out by mechanical activation-assisted solid phase reaction in a stirring ball mill. FTIR analysis of the products confirmed that these metal salts could catalyze the esterification of cellulose. XRD, SEM, FTIR, and ³¹P-NMR analyses of different samples indicated a synergistic effect between metal salt and ball milling, and the presence of metal salts enhanced the destruction on crystal structure of cellulose by mechanical force. The catalytic mechanism of three metal salts was difference: sodium bisulfate and ammonium ferric sulfate belonged to the catalytic mechanism of protonic acid and Lewis acid, respectively, while the catalytic mechanism of sodium hypophosphite was considered as that it could react with maleic acid to form active intermediates under ball milling.     

Influence of structure and chirality of the selector on the chiral recognition of amino acids using ligand-exchange capillary electrophoresis

The dependence of the chiral recognition ability and enantiomer migration order on the structure, substitution pattern and chirality of chiral selectors used in ligand-exchange capillary electrophoresis is investigated. As chiral selectors different N-alkyl derivatives of proline and hydroxyproline as their copper(II) complexes are used. The influence of the position and conformation of the hydroxy group in the hydroxyproline derivatives and of the structure and chirality of the side chain on enantioselectivity is investigated. Furthermore, the effect of surfactants such as sodium dodecyl sulfate and cetyl trimethyl ammonium bromide on resolution and enantiomer migration order is studied. The investigations were carried out with three aromatic amino acids as model compounds.     

外加盐对纤维素硫酸半酯钠盐溶液粘度的影响

纤维素硫酸半酯钠盐是一种阴离子型强聚电解质,共水溶液是典型的聚电解质溶液。本文以粘度法研究了多种外加盐对纤维素硫酸半酯钠盐溶液粘度的影响,考察了外加盐浓度、外加盐阳离子和阴离子与大分子形态结构的关系,对高价Al~(+3)离子的桥架效应也作了初步探讨。     

Interactions of counterions with dextran sulfate in aqueous solutions

Counterion activity coefficients in solutions of dextran sulfate with and without added salts were determined potentiometrically by using a cation-exchange membrane and a sodium glass electrode. Dextran sulfate was shown to interact with monovalent cations in the order of preference: K⁺ > Cs⁺ > Na⁺ > Li⁺, whereas no specificity was found for bivalent cations. On the basis of light-scattering measurements, the expansion of the dextran sulfate polyion in solutions of alkali metal salts was found to fall in the same order as the counterion activity coefficients in salt-free solutions. It was also shown that the dextran sulfate polyion assumes a more extended conformation in magnesium chloride solution than in calcium chloride. These results were substantiated by measurements of solution viscosities.     

Salt effects on the interaction of an amphiphilic model molecule with immobilized phosphatidylcholine monolayers

The retention of hydrocortisone (used as an amphiphilic model solute) on an immobilized artificial membrane (IAM) column was investigated in relation to the mobile phase concentration of three sodium salts (representing different rankings in the Hofmeister series, i.e. perchlorate, chloride and sulfate) in order to provide insight into the nature of the solute interactions with phospholipid monolayers. The influence of the salt series on solute retention was found to follow the Hofmeister series, emphasizing the role of hydrophobic effect in the solute retention mechanism on phospholipid monolayers. Retention models based on the extended Wyman relations (preferential interaction theory) were developed to analyze more quantitatively the salt effects on the hydrocortisone retention factor. This analysis as well as additional thermodynamic study suggested that the hydrocortisone binding to IAM involved both an insertion into the hydrophobic inside governed by hydrophobic effects and contacts with the interfacial region implying interactions such as van der Waals interactions/hydrogen bonds between the solute hydroxyl groups and the polar headgroups of phospholipidmonolayers.     

Molecular structure of basic oligomeric building units of heparan-sulfate glycosaminoglycans

This study reports in detail the results of systematic large-scale theoretical investigations of the acidic dimeric structural units (D–E, E–F, F–G, and G–H) and pentamer D–E–F–G–H (fondaparinux) of the glycosaminoglycan heparin, and their anionic forms. The geometries and energies of these oligomers have been computed using HF/6–31G(d), Becke3LYP/6–31G(d), and Becke3LYP/6–311+G(d,p) methods. The optimized geometries indicate that the most stable structure of these units in the neutral state is stabilized via a system of intramolecular hydrogen bonds. The equilibrium structure of these species changed appreciably upon dissociation. Water has a remarkable effect on the geometry of the anions studied. Because of high negative charge, the solvent effect also resulted in an appreciable energetic stabilization of biologically active anionic forms of these glycosaminoglycans. The stable energy conformations around glycosidic bonds found for dimers and pentamer investigated are compared and discussed with the available experimental X-ray structural data for the structurally related heparin-derived pentasaccharides in cocrystals with proteins.     

Supersaturation control in aragonite synthesis using sparingly soluble calcium sulfate as reactants

Sparingly soluble calcium salts were studied as reactants in the synthesis of needle-like precipitated calcium carbonate (PCC). The morphology and aspect ratio of the PCC particles were characterized with SEM. Polymorphs and crystal size were characterized using X-ray diffraction. The counterions of the sparingly soluble salts influenced the growth kinetics of PCC as well as the polymorphism and morphology of product particles. Either chrysanthemum-like or needle-like aragonite can be synthesized from calcium sulfate and sodium carbonate depending on the supersaturation and synthesis conditions. Low concentration and slow addition rate of sodium carbonate solution were favorable to the formation of aragonite. Addition of sodium sulfate to the reaction system (calcium chloride and sodium carbonate) promoted the formation of aragonite and decreased the crystal size of aragonite due to the decrease of supersaturation and adsorption of sulfate ion. Too much added sodium sulfate, however, did not further increase the aragonite fraction. An optimal temperature for the formation of aragonite was found to be ca. 60 degrees C. Slow dissolution kinetics of sparingly dissoluble salt also is very important for controlling PCC polymorphism and morphology.     

Interaction of sodium polyacrylate adsorbed on TiO2 with cationic and anionic surfactants

Attenuated total reflection-Fourier transform infrared spectroscopy (ATR-FTIR) was used to identify the structures formed during the adsorption of sodium polyacrylate (NaPA) on charged TiO2 particles and to determine the subsequent interaction of the adsorbed polymer structure with cationic and anionic surfactants. The nature of the polymer structure was deduced from the adsorbed amount in tandem with the information obtained from monitoring the change in the relative intensity of the COO- and COOH infrared bands. In particular, it is found that the relative number of COO- and COOH groups on the polymer backbone for the adsorbed state differs from that of the same polymer in solution. This difference is due to a shift in the population of COO-/COOH groups on the polymer backbone that arises when the COO- groups bind to positively charged sites on the surface. A change in the number COO-/COOH groups on the polymer is thus related to a change in the bound fraction of polymer. It is shown that the initial NaPA approaching the bare surface adopts a flat conformation with high bound fraction. Once the bare sites on the surface are covered, the accommodation of additional polymer on the surface requires the existing adsorbed layer to adopt a conformation with a lower bound fraction. When the adsorbed NaPA is probed with a solution containing the anionic surfactant sodium dodecyl sulfate (SDS), the SDS competes for surface sites and displaces some of the bound NaPA segments from the surface, giving rise to an polymer layer adsorbed with an even lower bound fraction. In contrast, addition of a solution containing the cationic surfactant cetyltrimethylammonium bromide (CTAB) results in the binding of the surfactant directly to the free COO- sites on the adsorbed polymer backbone. Confirmation of a direct interaction of the CTAB headgroup with the free COO- groups of the polymer is provided by intensity changes in the headgroup IR bands of the CTAB.     

Temperature‐induced conformational transition of bovine serum albumin in neutral aqueous solution by reversed‐phase liquid chromatography

The temperature‐induced conformational transition of bovine serum albumin (BSA) in neutral aqueous solution was studied using intrinsic fluorescence emission spectrum, reversed‐phase liquid chromatography and sodium dodecyl sulfate–polyacrylamide gel electrophoresis, and the conformation transition thermodynamic parameters were determined in the temperature range 12–50 °C. The results showed that, in the temperature range 12–20 °C, BSA only existed in a single conformation state A, while in the temperature range 22–50 °C, it existed in two different conformation states: A and B. The percentage of conformation state A decreased while that of conformation state B increased with the increase in temperatures, and when temperature approached 50 °C conformation state B accounted for approximately 25% of all conformation states of BSA. In the conformational transition of BSA from conformation state A to conformation state B, the positive enthalpy change, entropy change and free energy changes demonstrated that the conformational transition was endothermic, nonspontaneous and mainly entropy‐driven. © 2013 The Authors. Biomedical Chromatography published by John Wiley & Sons, Ltd.     

Potentiometric and Spectroscopic Characterization of Copolypeptide-Surfactant Complexes Formed by a Cooperative Binding System

The binding behavior of an anionic surfactant, sodium dodecyl sulfate (SDS), to a series of L-lysine-containing copolypeptides in aqueous solutions was investigated in relation to the conformational change of copolypeptide-surfactant complexes with the use of potentiometric and spectroscopic techniques. The present results of CD spectra and the binding isotherm of SDS by copolypeptides of opposite charges can lead us to conclude that SDS binds cooperatively to the positively charged side groups of a series of copolypeptides used in this work, resulting in the formation of a micelle-like cluster due to an additional hydrophobic interaction among bound SDS ions. Solid-state properties of the stoichiometric copolypeptide-SDS complexes were also examined by using CD and FT-IR spectroscopies; (Lys, Tyr) (1:1) and (4:1) systems adopt a beta-pleated sheet conformation, while (Lys, Trp) (4:1) and (Lys, Phe) (1:1) systems adopt an alpha-helical conformation. Based on the results of FT-IR spectra, in all cases surfactant alkyl chains of SDS in the solid complexes were in an extended conformation. Copyright 2000 Academic Press.     

A new oxidation state of aniline pentamer observed in water‐soluble electroactive oligoaniline‐chitosan polymer

A novel water‐soluble electroactive polymer, aniline pentamer crosslinked chitosan (Pentamer‐c‐Chi), was prepared by condensation polymerization of the terminal carboxyl groups in aniline pentamer with the amino side groups in chitosan in aqueous solution. The carboxyl groups were activated by N‐hydroxysuccinimide (NHS) and N,N′‐dicyclohexylcarbodiimide (DCC). The electrochemical behavior of anilinepentamer in this kind of crosslinked polymer was studied in acidic aqueous solution by means of cyclic voltammetry (CV), UV–vis, and electron spin resonance (ESR) spectroscopy. There were three reversible redox peaks in the CV of Pentamer‐c‐Chi. A new emeraldine oxidization state in the form of radical cations was proposed, which was associated with the new absorption band at 370 nm in the UV–vis spectra. The ESR of the aqueous solution of Pentamer‐c‐Chi showed a single Lorentzian shaped signal, which suggested the existence of radical cations. The new redox state was pH dependent and appeared only at pH < 3. The stability of radical cations could be attributed to the hydrogen bonds between radical cations, water, and chitosan. Morphological structure of the Pentamer‐c‐Chi can be adjusted by varying the content of aniline pentamer. © 2007 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 1124–1135, 2008     

DNA分子结构的多态性研究 (Ⅱ) 吖啶橙凝聚体变化诱导的质粒DNA大分子构象的研究

利用吸收光谱和荧光光谱方法,研究了吖啶橙（ＡＯ）与质粒ＤＮＡ水溶液、以及含胶束介质的吖啶橙与质粒ＤＮＡ溶液体系的相互结合作用及减色效应。结果表明：吖啶橙对质粒ＤＮＡ的吸收光谱有减色效应;含十二烷基硫酸钠（ＳＤＳ）的ＡＯ水溶液体系中,随着ＳＤＳ浓度的增加,其光谱结果表现为由凝聚态向单体的转化。而在含十二烷基硫酸钠（ＳＤＳ）的ＡＯ与质粒ＤＮＡ溶液体系中,吖啶橙凝聚态随ＳＤＳ浓度的增加,对ＡＯ与质粒ＤＮＡ相互结合产生协同的减色效应,使质粒ＤＮＡ空间结构发生缩拢。进一步采用电泳法研究了ＡＯ凝聚态可能对质粒ＤＮＡ构象的影响,结果表明：在ＡＯ与质粒ＤＮＡ溶液体系中,ＡＯ浓度的增加对质粒ＤＮＡ构象未产生影响;而在含有ＳＤＳ的ＡＯ与质粒ＤＮＡ的溶液体系中,由于ＳＤＳ对ＡＯ凝聚态的解聚作用,以及ＳＤＳ对质粒ＤＮＡ减色效应的协同作用,使得质粒ＤＮＡ的构象发生变化,诱导质粒ＤＮＡ形成超螺旋构象