汞离子对细胞代谢通路影响的代谢组学

利用超高效液相色谱-四级杆飞行时间质谱（UPLC-Q-TOF-MS）技术对汞离子作用后细胞的代谢组学进行了研究,结合化学计量学方法,对代谢组学数据进行了多维统计分析.结果表明,与非汞离子作用组相比,汞离子作用组存在能量、磷脂、脂肪酸及氨基酸代谢异常,并发现16种有显著差异的生物标记物.进一步探讨了汞中毒的细胞代谢机理及细胞的应激保护.本研究建立的基于UPLC-Q-TOF-MS技术的细胞代谢组学快速分析方法可以对细胞在重金属作用后的代谢物变化进行轮廓分析.     

小儿肺炎患者尿液的代谢组学初步研究

利用液相色谱-质谱联用法对小儿肺炎( Childhood pneumonia, CP)患者和健康儿童( Healthy control)的尿液进行分析,发现小儿肺炎患者尿液中的潜在标记物,为其发病机制及早期筛查提供科学依据。筛选10例小儿肺炎患者(age 47.72±2.35 months)及10例健康儿童(age 46.65±1.97 months)尿液样本,采用快速高分辨液相色谱四极杆-飞行时间质谱联用( RRLC-Q TOF/MS)技术对其尿液代谢物进行分析,通过主成分分析方法( PCA)对两组代谢物进行分类,并发现潜在生物标记物。 RRLC-Q TOF/MS检测表明,CP组和Healthy Control组尿液代谢物图谱能得到很好的区分,并鉴定了5种生物标记物,提示嘌呤代谢、氨基酸代谢可能在小儿肺炎发生发展中有重要作用。     

基于液相色谱-质谱技术的代谢组学分析方法新进展

液相色谱-质谱联用技术是代谢组学研究领域的主要技术平台之一,近年来基于液相色谱-质谱联用技术的代谢组学分析方法获得了巨大发展。本文结合本研究组在代谢组学方面的研究成果,综述了近年来液相色谱-质谱联用技术在代谢组学分析方法方面的新进展,并对其发展前景进行了展望。综述引用文献41篇。     

基于液相色谱-质谱联用的代谢组学技术研究Pokemon诱导的胞内脂代谢变化

Pokemon是一种转录抑制因子,能够通过影响染色质的重组或直接与抑癌基因结合而抑制抑癌基因的转录,促使肿瘤形成。该文利用基于液相色谱-质谱联用的代谢组学技术研究了Pokemon在肝癌中调控细胞代谢的作用机制。通过脂质转染,获得了Pokemon高表达的HL7702细胞,分别收集转染后不同时间点的细胞。利用基于液相色谱-质谱联用技术的代谢组学方法,分析胞内代谢物的成分。根据多元统计分析的结果选出差异显著的候选代谢物,通过数据库（METLIN和HMDB）检索、二级图谱比对进行结构解析,确证了36种代谢物。通过KEGG数据库检索发现这些代谢物主要与脂质合成相关。进一步分析发现脂质合成途径中乙酰辅酶羧化酶和脂肪酸合成酶均被激活。结果显示,Pokemon可通过激活细胞中脂质合成通路而影响细胞的代谢。     

慢性心功能衰竭患者尿液的代谢组学研究

采用基于液相色谱-质谱联用的方法对慢性心力衰竭(Chronic heart failure, CHF)患者和正常对照(Control)人群的尿液进行分析, 筛选慢性心力衰竭患者尿液中的差异代谢物, 研究其发病机制, 并为临床治疗提供科学依据.选择15个慢性心力衰竭患者(年龄(62.27±3.14)岁)及15个正常人(年龄(65.41±4.63)岁), 采用高分辨度快速液相色谱-四极杆-飞行时间串联质谱(RRLC-QTOF/MS)技术对尿液代谢物进行分析, 采用主成分分析(PCA)对两组代谢物进行分类, 并筛选潜在生物标记物;运用偏最小二乘判别分析法(PLS-DA)建模, 考察生物标记物对疾病筛选的预测能力.研究结果表明, CHF组和Control组尿液代谢物谱能得到很好的区分, 发现并鉴定了2种潜在生物标记物尿苷及丙氨酰色氨酸, 提示嘧啶代谢和色氨酸代谢可能在心力衰竭发生发展中有重要作用.     

基于花生四烯酸代谢通路研究水飞蓟素对脂多糖诱导炎症模型影响

以脂多糖类似物(KLA)诱导的RAW264.7细胞为研究对象,采用代谢组学研究手段,研究水飞蓟素对脂多糖诱导炎症模型中花生四烯酸代谢通路的影响。以超高效液相色谱-三重四极杆质谱联用为平台,对不同浓度水飞蓟素作用下KLA诱导RAW264.7炎症细胞分泌的类二十烷酸代谢物进行定量分析,通过考察主成分分析(PCA)、正交偏最小二乘法判别分析(OPLS-DA)的VIP值和Kruskal-Wallis秩和检验结果显著性差异(P)值筛选代谢标记物。建立了59种类二十烷酸(含15种同位素内标)在5 min内实现快速分离的液相色谱-质谱联用方法;确定了细胞存活率在58%~80%的水飞蓟素浓度为50~150μmol/L;筛选出数据处理结果同时满足变异权重参数(VIP)值1且结果P值0.05的类二十烷酸代谢标记物12-OxoLeukotriene B4(12-OxoLTB4);通过分析柱状图和炎症信号通路,确定水飞蓟素借助其抗氧自由基特性发挥抗炎作用,通过抑制脂氧合酶-5(5-LOX)的活性及阻断5-LOX代谢通路中产生氧自由基的脂质过氧化反应来减少氧自由基及过氧化物的形成。综上所述,所建立的方法能快速准确地定量分析多种类二十烷酸,并从代谢组学角度解释了水飞蓟素的抗炎机制。     

短暂性脑缺血的尿液代谢标志物筛选

以筛选短暂性脑缺血(TIA)的早期体内生物标志物为目的,基于高分离度液相色谱-四极杆飞行时间质谱联用技术对双侧颈总动脉闭塞引起的TIA大鼠模型的尿液进行代谢组学研究。筛选并鉴定L-苹果酸、D-葡萄糖醛酸-6,3-内酯、L-苏氨酸、L-缬氨酸、L-古洛糖酸-1,4-内酯、抗坏血酸、磷酸烯醇丙酮酸7种TIA损伤重要的尿液代谢标志物;主要参与机体的抗坏血酸代谢、丙酮酸代谢与支链氨基酸代谢,调节体内的氧化应激、炎症反应与神经保护。本研究运用了高分离度色谱质谱联用技术筛选TIA代谢标记物,为脑卒中的早期诊断与治疗提供了科学依据。     

膀胱癌血清及尿液代谢组学研究

应用代谢组学研究方法,对与膀胱癌(Bladder cancer,BC)发病相关的生物标志物进行筛选,采用液相色谱-电喷雾质谱(LC-ESI/MS)联用技术对20名膀胱癌患者与24名正常人的血清和尿液进行研究.多变量统计分析结果表明,膀胱癌患者和正常人聚类明显,血清和尿液中分别发现13个潜在标志物.其中,(2E,6E,8E)-二十二碳三烯-1-醇、7-((1S,2S)-2-(庚胺)环己基)庚酸和(11E,14E,17E)-三烯-二十碳-1-醇首次在血清中发现,有潜力成为膀胱癌诊断标志物.液相色谱-质谱联用结合多变量分析的代谢组学研究技术在膀胱癌诊断中展现出巨大潜力.     

基于液相色谱联合离子阱-飞行时间质谱技术的海洛因滥用成瘾大鼠血清代谢组学研究

建立海洛因成瘾动物模型,研究海洛因成瘾大鼠血清代谢物变化,寻找其潜在的标志物。实验动物设成瘾组和空白对照组,运用液相色谱联合离子阱-飞行时间质谱(LC/MS-IT-TOF)分析方法研究海洛因成瘾对大鼠血清代谢变化的影响。分别采用主成分分析(PCA)、偏最小二乘法-判别分析(PLS-DA)分析成瘾组和正常对照组之间的代谢差异。结果表明成瘾组和对照组大鼠在血清代谢水平上具有明显差异,经统计学分析初步筛选出26个潜在的生物标记物的质荷比。海洛因成瘾代谢组学研究具有一定的可行性,代谢组学在判定海洛因成瘾与否方面具有一定的潜在价值。     

尿液代谢组学方法研究人参总皂苷治疗糖尿病心肌病大鼠作用机制

利用基于质谱的代谢组学方法考察了人参总皂苷(TG)治疗糖尿病心肌病(DCM)大鼠的效应机制;建立了糖尿病心肌病大鼠模型,并连续12周口服人参总皂苷,采用快速高分辨液相色谱/四级杆-飞行时间/质谱(RRLC/Q-TOF/MS)技术对糖尿病心肌病模型组(DCM组)和人参总皂苷治疗组(TG组)大鼠尿样的尿液代谢物进行分析,采用主成分分析(PCA)对两组代谢物进行分类,并寻找潜在生物标记物,同时检测心肌病理超微结构、血液生化指标和心肌氧化应激水平。RRLC/Q-TOF/MS检测结果表明,DCM组和TG组大鼠的尿液代谢物谱能得到很好的区分,发现并鉴定了3种生物标记物。TG降低了DCM大鼠心肌超微结构损伤并改善其血脂、血糖及心肌氧化应激水平,代谢组学研究结果表明:作用机制可能是TG对柠檬酸循环、脂肪酸代谢和氧化应激水平的调节作用。     

GC/MS-based metabolomics reveals fatty acid biosynthesis and cholesterol metabolism in cell lines infected with influenza A virus

Metabolomics is the downstream of systems biology and has drawn significant interest for studying the metabolic networks from cells to organisms. To profile the metabolites in two different cell lines (A549 and AGS) infected with influenza A virus, gas chromatography coupled with mass spectrometry (GC/MS) was employed. Some differentiating metabolites in the cell lines were tentatively identified using reference library, interpreted and visualized by applying principal components analysis (PCA) and cluster heat map. Consequently, metabolic flux profiling allowed the differentiation of fatty acid biosynthesis and cholesterol metabolism during viral replication in the cell lines. The change in fatty acid turnover was also observed. Metabolomics investigation also revealed the different responses between A549 and AGS cell lines to the virus infection. From the pattern recognition results, AGS cell line might be more susceptible to influenza A virus. Regarding the fact that AGS is a poorly differentiated gastric adenocarcinoma cell line whereas A549 is a relatively differentiated lung tumor one, it is speculated that viral replication might be associated with the cell differentiations.     

Metabolic shifts induced by human H460 cells in tumor‐bearing mice

Tumor markers are most popularly used in diagnosis of various cancers clinically. However, the confounding factors of individual background diversities, such as genetics, food preferences, living styles, physical exercises, etc., greatly challenge the identification of tumor markers. Study of the metabolic impact of inoculated tumors on model animals can facilitate the identification of metabolomic markers relevant to tumor insult. In this study, serum metabolites from nude mice (n = 14) inoculated with human H460 cells (human nonsmall cell lung carcinoma) were profiled using gas chromatography time‐of‐flight mass spectrometry. The mice with inoculated tumors showed an obviously different metabolic pattern from the control; identification of the discriminatory metabolites suggested the metabolic perturbation of free fatty acids, amino acids, glycolysis and tricarboxylic acid (TCA) cycle turnover. The significantly decreased TCA intermediates, free fatty acids, 3‐hydroxybutyric acid and fluctuating amino acids (t‐test, p < 0.05) in serum of tumor‐bearing mice characterized the metabolic impact of local inoculated H460 tumor cells on the whole system. This indicates that they are candidate metabolomic markers for translational study of lung cancer, clinically. Copyright © 2015 John Wiley & Sons, Ltd.     

Design,Synthesis and Antitubulin Activity of Novel Podophyllotoxin Derivatives as Potent Anticancer Agent

Twenty novel podophyllotoxin derivatives(1―20) were designed and synthesized. The anti-proliferation activities of these compounds were evaluated against three human cancer cell lines(HepG2, Calu-1 and MCF-7) using podophyllotoxin and Combretastatin A4(CA-4) as positive controls. Among all the compounds, compound 2 displayed more significant anti-proliferation activities against MCF-7 and Calu-1 cell lines and showed lower toxicity towards non-cancer cells. Furthermore, the cell cycle and apoptosis analysis results revealed that compound 2 can cause cell arrest at G2/M phase, leading to cancer cell apoptosis. Meanwhile, it can also reduce the adhesive ability of Calu-1 cells to fibronectin and laminin. The docking simulation results demonstrated that compound 10 can nicely bind to the colchicine site of tubulin. The podophyllotoxin derivatives are worthy to be further investigated to obtain more potent anti-cancer drugs.     

Oak gum mediated green synthesis of silver nanoparticles under ultrasonic conditions: Characterization and evaluation of its antioxidant and anti-lung cancer effects

Herein, we represent the bio-synthesis of silver nanoparticles (Ag NPs) employing Oak gum as the green template, an efficient natural and non-toxic reductant and stabilizer based on its phytochemicals by using ultrasonic irradiation. The characterization of as-synthesized Ag NPs was performed through Fourier transformed infrared spectroscopy (FT-IR), scanning electron microscopy (SEM), transmission electron microscopy (TEM), energy dispersive X-ray spectroscopy (EDS), elemental mapping, UV–Vis and X-ray diffraction (XRD). After the characterization, the synthesized Ag NPs/O. Gum was engaged in biological assays like study of anti-oxidant properties by DPPH mediated free radical scavenging test using MeOH and BHT as reference molecules. Thereafter, on having a significant IC₅₀ value in radical scavenging assay, we extended the bio-application of the desired nanocomposite in anticancer study of A549, Calu6 and H358 human lung cell lines in-vitro through MTT assay. They had very low cell viability and high anti-human lung cancer activities dose-dependently against the cell lines without any cytotoxicity on the normal cell line (MRC-5). The IC₅₀ of Ag NPs/O. Gum was found 161.25, 289.26 and 235.29 µg/mL against A549, Calu6 and H358 cell lines, respectively. Maybe significant anti-human lung cancer potentials of Ag NPs/O. Gum against common lung cancer cell lines are related to their antioxidant activities. So, these results suggest that synthesized Ag NPs/O. Gum as a chemotherapeutic nanomaterial have a suitable anticancer activity against lung cell lines.     

A Study on VOCs Released by Lung Cancer Cell Line Using GCMS-SPME

The gas chromatography mass spectrometry (GCMS) with combination of Solid Phase Micro-extraction (SPME) was used to study the volatile organic compounds (VOCs) which emitted by the in-vitro cultured human cells and compared with documented volatile biomarker of lung cancer. For this purpose, the lung cancer cell (A549) and non-cancerous lung cell (WI38VA13) were cultured in identical growth medium, concurrently. The VOCs in the headspace of the cell cultures and the blank growth media (reference sample) were collected directly from the culture flask using SPME for 15minutes. The results show that two different volatile metabolites were screened out between A549 cells and Wi38VA13 cells. A549 cell found to emit 2 noticeable VOC which are decane and heneicosane. While for WI38VA13, the VOCs released were 1-Heptanol and heptadecane. The acquired VOCs were compared with the previous studies. The findings in this work conclude that the specific VOC of cells can be act as their odour signature and can be used to provide non-invasively screening of lung cancer using gas array sensor devices.     

基于拟靶向液相色谱-质谱联用的胃癌患者血清代谢组分析

胃癌是一种高发的恶性肿瘤,是癌症相关死亡的第二大病因。早期筛查是提高患者生存率的有效手段,但目前临床上尚缺乏实现胃癌无创筛检的可靠标志物。本研究采用了基于液相色谱-质谱联用的拟靶向代谢组学方法分析了20例胃癌患者及40例正常人血清代谢组,以期发现新的潜在代谢标志物。代谢组数据的主成分分析和偏最小二乘法数据分析结果显示,胃癌患者与健康人群的血清代谢组存在明显的差异,结合非参数检验进一步筛选并定性出57个差异代谢物。其中二氢胆固醇经验证组样本验证,具有成为胃癌代谢标志物的潜力。本研究在发现胃癌的潜在代谢标志物的同时,也为胃癌患者代谢分型提供了重要的科学依据。     

Allyl palladium complexes bearing carbohydrate-based N-heterocyclic carbenes: Anticancer agents for selective and potent in vitro cytotoxicity

Novel allyl palladium compounds stabilized by carbohydrate-based N-heterocyclic carbenes (NHCs) were prepared and characterized by nuclear magnetic resonance, high-resolution mass spectrometry and elemental analysis. The antiproliferative activity of the compounds was tested on a panel of different tumor lines, especially ovarian cancer and MRC-5 human lung fibroblasts (nontumor cells). These experiments showed that both mixed NHC/PPh₃ and NHC/PTA (PTA = 1,3,5-triaza-7-phosphaadamantane) allyl complexes have IC₅₀ (half maximal inhibitory concentration) values comparable and sometimes even significantly lower than cisplatin. Moreover, the mixed NHC/PTA allyl complexes exhibit good activity toward the seven tumor lines tested with a substantial inactivity against normal cells, a necessary condition to avoid the general cytotoxicity of a metallo-drug. Furthermore, this subclass of compounds proved particularly active on the A549 lung cancer tumor line (up to 100-fold more cytotoxic than cisplatin) and exhibited satisfactory cytotoxicity against KURAMOCHI and OVCAR3 cell lines, which are currently considered the best in vitro models for serous ovarian cancer, the most lethal tumor for women worldwide.     

Cytotoxic performance of green synthesized Ag and Mg dual doped ZnO NPs using Salvadora persica extract against MDA-MB-231 and MCF-10 cells

In this study, dual doped Zinc oxide nanoparticles consisted of silver and magnesium were prepared by Salvadora persica extract. Powder X-ray diffraction (PXRD) analysis displayed the formation of wurtzite ZnO phase nanostructures and dual doped nanoparticles. The morphological observations of scanning electron microscopy (SEM) confirmed the hexagonal morphology of prepared nanoparticles. The Raman scattering of this product exhibited the first and second orders of polar and non-polar modes that are the characteristic bonds of a wurtzite structure. The toxicity effects of synthesized un-doped, as well as Ag and Mg dual doped ZnO NPs on breast cancer cell (MDA-MB-231) and breast normal cell (MCF-10A) lines, were investigated by the means of MTT test. Accordingly, in comparison to the case of silver and magnesium doped zinc oxide nanoparticles, the un-doped ZnO NPs caused a more toxic impact on MDA-MB-231cells. There was a lack of any significant toxicity effects from un-doped and Ag and Mg dual doped ZnO nanoparticles on the experimented normal cell line (MCF-10A). The gathered results were indicative of a lower toxicity effect in doped nanoparticles when compared to un-doped nanoparticles and therefore, it can be stated that the doping of silver and magnesium metals produces more reliable zinc oxide nanoparticles.     

基于液相色谱-质谱联用技术的代谢组学方法在细胞种属分类中的应用

细胞内的代谢产物可以反映细胞的生理状态。为了考察基于胞内代谢物的指纹图谱对不同种属细胞进行区分的可行性,利用基于超高效液相色谱-高分辨飞行时间质谱(UPLC-TOF MS)技术的代谢组学方法对5种不同来源的细胞进行分类,获得了小分子代谢产物的差异表达谱,并采用主成分分析(PCA)数据处理方法对各类细胞进行模式识别。研究结果表明,不同的细胞种属之间均能呈现显著性差异。该研究可从分子水平对细胞种属进行分类,为细胞种属的鉴定与评价提供了一种新的技术方法,为细胞组学的深入研究提供了一种潜在的、非常具有应用前景的技术手段。     

基于亲和色谱的肺癌细胞磷酸化蛋白质组研究及其应用

磷酸化是蛋白质翻译后修饰的重要形式之一,其异常往往会导致细胞内信号通路的紊乱和疾病的发生。固定化金属离子亲和色谱(IMAC)是磷酸化肽段的高效富集技术,在磷酸化蛋白质组研究方面应用广泛。该研究以金属钛离子(Ti⁴⁺)螯合IMAC材料(Ti⁴⁺-IMAC)为载体,进行磷酸化肽段富集。比较了10 μm Ti⁴⁺-IMAC通过振荡法和固相萃取法(SPE)富集磷酸肽的效果,发现振荡法可以富集到更多的磷酸肽;对比了两种尺寸(10 μm和30 μm)Ti⁴⁺-IMAC在磷酸化肽段富集中的差异,发现小尺寸材料富集效果更佳。进一步采用优化的策略比较了不同转移能力肺癌细胞的磷酸化蛋白质组,免标记定量蛋白质组学结果表明,优化的Ti⁴⁺-IMAC方法可以从正常的肺成纤维细胞MRC5、低转移肺癌细胞95C和高转移肺癌细胞95D中分别鉴定到510、863和1108种磷酸化蛋白质,其中317种为3组所共有。该研究共鉴定到1268种磷酸化蛋白质上的7560个磷酸化位点,其中1130个为差异磷酸化位点,文献报道显示部分异常表达的激酶与癌症转移密切相关。通过生信对比分析发现,异常表达的磷酸化蛋白质主要与细胞侵袭、迁移和死亡等细胞迁移方面的功能有关。通过优化磷酸化肽富集策略,初步阐明了磷酸化蛋白质网络的异常与肺癌转移之间的相关性,该方法有望用于肺癌进展相关的磷酸化位点、磷酸化蛋白质及其信号通路研究。