Conformation of α,α,α′-Trisubstituted Cyclododecanone

Ten α,α,α′-trisubstituted cyclododecanones were synthesized and characterized by elemental analyses, infrared, 1^H NMR and 13^C NMR spectra, and X-ray diffraction. NMR data could not give conformational information clearly, but some of their ring skeleton conformations of cyclododecanone moiety were showed to remain the unchanged [3333]-2-one conformation with little distortion, while the others were changed to the [3324]-2-one conformation in their crystal structures. These are consistent with the results of molecular mechanics calculation with Sybyl 6.9 software and Tripos force field, and semi-empirical quantum calculation with AM 1 method in Gaussian 98 software. Two geminal substituting groups are located at α-corner carbon atom, and the third group is at α-side-exo carbon atom in both conformations. Both [3333]-2-one and [3324]-2-one conformations are present in a dynamic equilibrium in the solution, but only one preferred conformation exists in the crystal solid.     

Aminolysis reaction of calix [ 4 ] arene esters and crystal structures and conformational behaviors of calix[4]arene amides

We first make use of aminolysis of calix[4]arene esters to synthesize calix[4]arene amides. When the two ethyl esters of the calix[4]arene esters are aminolysized, the 1, 3-amide derivative is formed selectively. The crystal structures of the calix-[4]arene with two butyl amide (3b) and four butyl amide moieties (4b) were determined. The intermolecular hydrogen bonds make 4b form two-dimensional net work insolid state. The 1H NMR spectra prove that 3b is of a pinched cone conformation, while 4b and tetraheptylamide-calix[4]arene (6b) take fast interconversion between two C2v isomers in solution and appear an apparent cone conformation at room temperature. As decreasing temperature, the interconversion rate decreases gradually and, finally, the interconversion process is frozen at Tc = -10℃, which makes both conformations of 4b and 6b the pinched cone structures. The hydrogen bond improves the interconversion barrier, and the large different values of the potential barrier between 6b and 4b (or 6b) may     

Crystal Structure and Photoreactive Properties of 1-(2,5-Dimethyl-3-thienyl)-2-[2-methyl-5-(N-(quinolin-8-yl)-2-carboxamide)-3-thienyl)]perfluorocyclopentene

The photochromic title compound,C_(26)H_(18)F_6N_2OS_2,contains a 2,5-dimethylthiophene ring and a N-formyl aminoquinolinyl thiophene ring on the C=C double bond of the cyclopentene ring.The dihedral angles between the cyclopentene and attached N-formyl aminoquinolinyl thiophene ring and 2,5-dimethylthiophene ring are 63.0° and 137.1°,respectively.The dihedral angle between the thiophene ring and the adjacent aminoquinoline ring is 5.7°.The molecule adopts an antiparallel conformation,with a distance between the two photoreactive C atoms of 3.763 ?.In addition,the absorption and fluorescence spectral changes were measured in acetonitile and solid at room temperature,and the result showed that the title compound could undergo photochromic reaction in both states.     

Synthesis and Conformation Analysis of cis-1,2-Disubstituted Cyclododecanes

cis-1,2-Disubstituted cyclododecanes 2 were synthesized by sodium borohydride reduction of 2-monosubstituted cyclododecanones and their structures were confirmed by 1H- NMR, 13C NMR and elemental analysis. The higher cis-selectivity of NaBH4 reduction of 2- monosubstituted cyclododecanones was rationalized by the mode of “corner position carbonyl participation”. Crystal data for 2c: Mr = 263.21, monoclinic, space group P21/c, a = 1.11140(7), b = 2.62590(17), c = 0.91360(6) nm, β = 106.1840(10)°, V = 2.5606(3) nm3, Dc = 1.366 g/cm3, Z = 8, F(000) = 1104, μ(MoKα) = 3.182 mm-1, S = 0.837, the final R = 0.0460 and wR = 0.1033. Crystal X-ray diffraction analysis for 2c showed that its ring skeleton adopts [3333] conformation, in which the OH group presents at the side-exo position and the other one at the corner carbon. The 1H NMR data of 2 showed that 1-corner-R-2-side-exo-OH [3333] and 1-corner-OH-2-side- exo-R [3333] conformations coexist in dynamic equilibrium in the solution, but only the former presents in the crystal.     

Hydrogen Bonded Semi-Rigidified Bispyridyl-Incorporating Aryl Amide Oligomers： Efficient ＂C＂-Styled Receptors for Aliphatic Ammoniums,a Remarkable Protonation Effect and Chiral Induction

The complexing behaviour of two linear compounds 1 and 2 toward the trifluoroacetic acid （TFA） salts of n-dodecylamine, di-n-octylamine, n-dodecyl D- and L-phenylalaninates （3, 4, and D- and L-5） in chloroform has been described. Compounds 1 and 2 consist of two folded amide moieties with two pyridyls at the terminals which are connected directly or with an acetylene linker. The rigidified folded moieties are stabilized by intramolecular hydrogen bonding, while the whole molecules can adopt an ＂S＂- or a ＂C＂-styled conformation depending on the relative orientation of the two rigidified moieties. ^1H NMR, UV-Vis, fluorescent and circular dichroism investigations revealed that 1 and 2 could bind primary and secondary ammonium cations with their ＂C＂-styled conformation. In the presence of 1 equiv, of TFA, the binding stability was increased significantly as a result of promoted formation of the ＂C＂-styled conformation due to the monoprotonation of the peripheral pyridyl units in 1 and 2. In contrast, the addition of 2 equiv, of TFA substantially weakened the binding stability because the ＂S＂-styled conformation was favored as a result of protonation of both of their pyridyl units. Moreover, remarkable induced circular dichroisms were also displayed for the complexes of 1 and 2 with chiral D- and L-5.     

Synthesis and Conformation of cis-1,2-Disubstituted Cyclododecene

Eight 1,2-disubstituted cyclododecenes were synthesized from a-alkoxycarbonyl-cyclododecanone and alkyl chloroformate. Their configuration and conformation determined by IR, NMR spectroscopy and X-ray diffraction analysis showed that the carbon-carbon double bond of all of the synthesized compounds has cis-configuration, and the ring skeleton of their preferred conformation is [lene2333] in solid, and they may adopt two different [lene2333] conformations, which exist in a dynamic equilibrium in solution.     

Crystal Structures of Fluoride and Chloride Complexes of Tris[（2-benzimidazolyl）methyl]amine

The crystal structures of fluoride and chloride complexes of tris[（2-benzimidazolyl）methyl]amine 1 were characterized by X-ray crystallography. 1 adopts （73 symmetrical geometry and cone-like conformation so as to allow its three NHs to associate with the anions through hydrogen bonds. Despite the different sizes of the anions, the two crystals are unexpectedly isostructural. The binding ability of the anions of 1 in solution was also studied by using of UV-vis spectroscopy.     

Host-Guest Interactions between N,N＇-Bis（ferrocenylmethyl- ene）-Diaminobutane and Benzenetetracarboxylic Dianhydride Bridged Bis（β-cyclodextrin）s

A novel water soluble ditopic guest, the quaternary ammonium salt of N,N＇-bis（ferrocenylmethylene）-diaminobutane （1）, and a known water soluble ditopic host, benzenetetracarboxylic dianhydride bridged bis（β-cyclodextrin）s （2）, have been synthesized and characterized. ^1H NMR spectra and cyclic voltammogram （CV） studies revealed the host-guest interactions between them in aqueous solution. The supramolecular interaction also exists in solid state as confirmed by the studies of the solid samples, which were obtained by frozen-drying the solution sampies, using FTIR spectroscopy and differential scanning calorimetry （DSC） techniques. TEM measurement demonstrated that wire-shaped supramolecular aggregates exist in the aqueous solution of the two compounds. The lengths of the aggregates could reach micrometers.     

STRUCTURAL STUDY OF BENZYLOXYCARBONYL-PROLYL-ALANYL-THREONYL-TERT-BUTYL ESTER

The crystal structure and molecular conformation of the synthetic oligopeptide (Z-Pro-Ala-Thr (But)_2) have been determined by X-ray analysis. The crystal is orthorhombic, spacegroup P2_12_12_1, with four molecules per unit cell of dimensions: a = 29.557, b = 11.583 andc = 8.830A. The diffraction data were collected using a PW-1100 four-circle diffractometer.The strueture was solved by direct methods, using the MULTAN-80 system of computerprograms and refined by the block-diagonal least-squares method. 7he final R value is 0.088(for non-hydrogen atoms). The Ala residue in this peptide is nearly in an eclipsed conformation. The peptide bondbetween Z and Pro is cis. The two atoms, C~β aud C~γ, are displaced on opposite sides of thepyrrolidine ring plane. The dihedral augles between the neighbouring peptide or carboxylgroups are all close to 90°. Hydrogen bonds link the peptides forming a chain in the zdireetion. The stacking of the peptides in the x and y directions is the result of the van derWaals fo     

Different J-Type Aggregates of meso-Tetrakis （4-hydroxyphenyl） porphyrin （H2THPP） Formed in Different Solvents

The aggregation of meso-tetrakis(4-hydroxyphenyl)porphyrin (H2THPP) in dimethylformamide (DMF)-water solution and in DMF-chloroform solution was studied by UV-vis absorption spectroscopy. The red shift of Soret band indicates the formation of J-type aggregates of H2THPP in these two solutions. However, different shift extent of Sorer band, 12 nm in DMF-water solution and 32 nm in DMF-chloroform solution, implies structural difference between these two J-type aggregates. The hydrogen bond between hydroxyl group and N-H bonds in porphyrin ring is thought as the main cause to the formation of J-type aggregate in DMF-chloroform solution, whereas the π-Q interaction between two adjacent porphyrin cores is thought as the main cause of the formation of J-type aggregate in DMF-water solution     

Syntheses of 2-oxabicyclo[4.10.0]hexadec-1(6)-ene from cyclododecanone

Two methods for the synthesis of 2-oxabicyclo[4.10.0]hexadec-1(6)-ene from cyclododecanone have been suggested. The most convenient method involves the preparation of 2-(3-tert-butoxypropyl)cyclododecanone by phase-transfer catalyzed alkylation of cyclododecanone with l-bromo-3-tert-butoxypropane followed by removal of the protectingtert-butyl group and elimination of water.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 4, pp. 659–661, April, 1994.     

7‐Cyclopropyl‐2′‐deoxytubercidin: a carbocyclic side‐chain derivative of 7‐deaza‐2′‐deoxyadenosine

The title compound {systematic name: 4‐amino‐5‐cyclopropyl‐7‐(2‐deoxy‐β‐D‐erythro‐pentofuranosyl)‐7H‐pyrrolo[2,3‐d]pyrimidine}, C₁₄H₁₈N₄O₃, exhibits an anti glycosylic bond conformation, with the torsion angle χ = −108.7 (2)°. The furanose group shows a twisted C1′‐exo sugar pucker (S‐type), with P = 120.0 (2)° and τ_m = 40.4 (1)°. The orientation of the exocyclic C4′—C5′ bond is ‐ap (trans), with the torsion angle γ = −167.1 (2)°. The cyclopropyl substituent points away from the nucleobase (anti orientation). Within the three‐dimensional extended crystal structure, the individual molecules are stacked and arranged into layers, which are highly ordered and stabilized by hydrogen bonding. The O atom of the exocyclic 5′‐hydroxy group of the sugar residue acts as an acceptor, forming a bifurcated hydrogen bond to the amino groups of two different neighbouring molecules. By this means, four neighbouring molecules form a rhomboidal arrangement of two bifurcated hydrogen bonds involving two amino groups and two O5′ atoms of the sugar residues.     

Synthesis and Molecular Structure of New Macro Acyclic Mannich Derivatives: Symmetrical and Unsymmetrical 2-[(E)-(Benzylideneamino)(aryl)methyl]cyclododecanone

Abstract

In an effort to provide a green synthetic route for heterocyclic scaffolds, new macro analogs of acyclic Mannich derivatives have been synthesized in good yields in a one-pot, efficient fashion. The acyclic symmetrical and unsymmetrical 2-[(E)-(benzylideneamino)(aryl)methyl]cyclododecanones have been synthesized by condensation of cyclododecanone, aromatic aldehyde, and ammonium acetate in ethanolic media. By infrared, NMR, and mass spectral analyses, their structures were determined. Examination of crystal structure of a p-Cl and o-Br analogs reveals the minimum energy [3333] square conformation of cyclododecanone ring. In the crystal, molecules aggregate in dimeric subunits formed by C-Cl … π and C-H..π interactions. The reported one-pot, multichain reaction of macrocycles is the first synthetic attempt of acyclic compounds in this type of Mannich reaction involving ketones containing active methylene groups.

Supplemental materials are available for this article. Go to the publisher's online edition of Synthetic Communications® to view the free supplemental file.     

A Novel Coordination Polymer, [Ag4^1 （bpdc）（H2bpdc）（Hbpdc）2]n （bpdc = 2,2＇-bipyridyl-3,3＇-dicarboxylate）： Coordination Models of bpdc Ligands

A novel coordination polymer, [Ag₄ppdc)(H₂bpdc)(Hbpdc)₂] (bpdc = 2,2′‐bipyridyl‐3,3′‐dicarboxylate), was hydrothermally synthesized at 403 K and structurally characterized by single crystal X‐ray diffraction analysis. The compound crystalizes in the monoclinic space group C2/c with a=1.9516(4) nm, b=1.9503(4) nm. c=1.2566(3) nm, and β=112.48(3)°. In the two‐dimensional crystal structure, Ag^I center is coordinated, in a scarce coordination environment, double‐capped tetrahedron, by one bpdc ligand to form N‐Ag‐N chelate bond via two pyridyl N atoms, and other two bpdc ligands to form two O‐Ag‐O chelate bonds, respectively, via two carboxyl O atoms. The bpdc ligands are present in one non‐protonated form, bpdc, and two protonated forms, Hbpdc and H2bpdc, which all act as μ3‐ligand in a hexadentate fashion (N, N′; O, O′; O, O′) to coordinate with three Ag centers, respectively, through the three chelate bonds. This coordinated fashion of bpdc ligand is first found in the title compound. W‐Us‐NIR reflectance spectroscopy study revealed insulator nature for the crystal with an optical energy gap of 3.1 eV.     

Synthesis and Crystal Structures of O‐2′,3′‐Cyclic Cyclopentanone and Cyclohexanone Ketals of the Cytostatic 5‐Fluorouridine

The synthesis of two O‐2′,3′‐cyclic ketals, i.e., 5 and 6 , of the cytostatic 5‐fluorouridine ( 2 ), carrying a cyclopentane and/or a cyclohexane ring, respectively, is described. The novel compounds were characterized by ¹H‐, ¹⁹F‐, and ¹³C‐NMR, and UV spectroscopy, as well as by elemental analyses. Their crystal structures were determined by X‐ray analysis. Both compounds 5 and 6 show an anti‐conformation at the N‐glycosidic bond which is biased from +ac to +ap compared to the parent nucleoside 2 . The sugar puckering is changed from ^2′E to _3′E going along with a reduction of the puckering amplitude τ_m by ca. 10–13° due to the ketalization. The conformation about the sugar exocyclic bond C(4′)? C(5′) of 5 and 6 remains unchanged, i.e., g⁺, compared with compound 2 .     

Interaction between (1,1'-Binaphthalene)-2,2'-diol and Lecithin Liposome

The interaction between (1,1′‐binaphthalene)‐2,2′‐diol (BINOL) and lecithin liposome was studied by UV‐Vis, fluorescence and ¹H NMR spectroscopies. BINOL can obviously associate with lecithin liposome and the preferential binding site of BINOL with lecithin liposome is located in the headgroup region. The hydrogen bond and electrostatic interaction should exist in BINOL/liposome system, which restricts intra‐annular rotation of naphthol moieties. Therefore, the fluorescence intensity of BINOL increases when a small quantity of liposome is added into the system. The partition coefficient K_D between the lecithin liposome and the aqueous phase is 310.9. With the increase of BINOL concentration, the micropolarity (I₁/I₃) and membrane fluidity of liposome decreased, while the viscosity of membrane increased.     

Synthesis of (+) or (-)-2-(8′-Diphenylphosphino-1′-naphthyl)oxazoline Ligands and Their Application in Pd-Catalyzed Allylic Alkylation Reaction

ＩｎｔｒｏｄｕｃｔｉｏｎＷｉｔｈｔｈｅｆａｍｏｕｓＤＩＯＰｌｉｇａｎｄ ,ＫａｇａｎｉｎｔｒｏｄｕｃｅｄｔｈｅｉｍｐｏｒｔａｎｔｃｏｎｃｅｐｔｏｆＣ2 ｓｙｍｍｅｔｒｙｉｎｌｉｇａｎｄｄｅｓｉｇｎ .1Ｈｏｗｅｖｅｒ ,ｉｔｉｓｎｏｔａｌｗａｙｓｔｒｕｅｔｈａｔａＣ2 ｓｙｍｍｅｔｒｉｃｌｉｇａｎｄｓｈｏｕｌｄｎｅｃｅｓｓａｒｉｌｙｂｅｓｕｐｅｒｉｏｒｔｏａｎｏｎ ｓｙｍｍｅｔｒｉｃｃｏｕｎ ｔｅｒｐａｒｔ .Ｔｒａｎｓｉｔｉｏｎｍｅｔａｌ ｃａｔａｌｙｚｅｄａｌｌｙｌｉｃａｌｋｙｌａｔｉｏｎｖｉａｓｙｍｍｅ…     

α-单取代环十二酮肟及缩氨基硫脲的合成及晶体结构

单晶X射线衍射分析表明, α-单取代环十二酮与氨衍生物羟胺和氨基硫脲发生缩合反应得到两种母体构象均为[3333], 而取代基为边外向或角反向的α-单取代环十二酮肟或缩氨基硫脲. 利用底物的“角位羰基参与反应”原理, “记忆效应”及进攻试剂与底物是否形成氢键解释了这一实验结果. 通常情况下, 试剂从空间障碍小的一面进攻羰基而生成α-角反取代环十二酮肟或缩氨基硫脲. 当试剂与底物的取代基之间能够形成分子间氢键时, 则生成α-边外取代环十二酮肟或缩氨基硫脲.     

Spectral study of a new dihydroisocoumarin

A novel dihydroisocoumarin, 3,4‐dihydro‐6,8‐dihydroxy‐3‐(2′‐acetyl‐3′‐hydroxy‐5′‐methoxy)methyl‐1H‐[2]benzopyran‐1‐one, was isolated from the chloroform extract of the sap of the traditional herb Aloe vera. Its structure was determined by high‐resolution negative fast atom bombardment mass spectrometry (MS), 2D NMR spectroscopy and x‐ray crystallography. The molecular structure was elucidated by 2D NMR analysis. The complete assignment of the ¹H and ¹³C NMR spectra of this compound was performed by using ¹H detected one‐bond heteronuclear multiple quantum correlation (HMQC) and long‐range (two and three bonds) heteronuclear multiple quantum bond correlation (HMBC) experiments. Detailed analyses of the one‐ and two‐dimensional NMR techniques are presented in additional to the spectral properties (MS, IR and UV). Copyright © 2003 John Wiley & Sons, Ltd.