Theoretical study of the electronic structure of HXY/XYH radicals (X[Double Bond]C,Si;Y[Double Bond]O,S)

The electronic structures of the HXY/XYH compounds (X[Double Bond]C,Si;Y[Double Bond]O,S) on the (2)A(') electronic ground state were investigated by applying the natural bond orbital (NBO) method to the computed B3LYP6-311G(**) wave functions. Different localized structures are proposed for the HXY and XYH isomers and the central XY unit is described as intermediate between a double and a triple bond in HCO, HCS, HSiO, and HSiS, similar to a double bond in COH, CSH, and SiSH, and clearly a single bond in SiOH. Through the comparison between the NBO results for the diatomic and hydrogenated compounds, the energy preferences on each pair of isomers and the computed geometrical parameters are explained. According to the structures proposed, the HXY compounds are sigma radicals with the spin density distributed along the molecular framework, while the XYH compounds are pi radicals with most of the unpaired spin located on an almost pure p orbital of the X atom. Finally, the amounts of spin density on natural atomic orbitals provided by the NBO method are used to explain the computed values of the isotropic and anisotropic hyperfine coupling constants.     

Spectroscopic, electronic structure and natural bond orbital analysis of o-fluoronitrobenzene and p-fluoronitrobenzene: a comparative study

Experimental FTIR, FT-Raman and FT-NMR spectroscopic studies of o-fluoronitrobenzene and p-fluoronitrobenzene have been carried out. A detailed quantum chemical calculations have been performed using DFT/B3LYP method with 6-311++G** and 6-31G** basis sets. Complete vibrational analyses of the compounds were performed. The temperature dependence of thermodynamic properties has been analysed. The atomic charges, electronic exchange interaction and charge delocalisation of the molecule have been performed by natural bond orbital (NBO) analysis. Molecular electrostatic surface potential (MESP), total electron density distribution and frontier molecular orbitals (FMOs) are constructed at B3LYP/6-311++G** level to understand the electronic properties. The charge density distribution and site of chemical reactivity of the molecules have been obtained by mapping electron density isosurface with electrostatic potential surfaces (ESP). The electronic properties, HOMO and LUMO energies were measured by time-dependent TD-DFT approach. (1)H and (13)C NMR spectra were recorded and (1)H and (13)C nuclear magnetic resonance chemical shifts of the molecule were calculated. The (1)H and (13)C nuclear magnetic resonance (NMR) chemical shifts of the molecules in chloroform solvent and in gas phase were calculated by using the Gauge-Independent Atomic Orbital (GIAO) method and are found to be in good agreement with experimental values. The theoretical parameters obtained at B3LYP levels have been compared with the experimental values.     

Structures and Electronic Properties of HOCl···HCOCl Complexes

B3LYP/6-311++G** and MP2/6-311++G** calculations were used to analyze the interaction between hypochlorous acid (HOCl) and formyl chloride (HCOCl). The results showed that there were four equilibrium geometries (S1, S2, S3, and S4) optimized at B3LYP/6-311++G** level, and all the equilibrium geometries were confirmed to be in stable states by analytical frequency calculations. Complexes S1 and S3 use the 5H atom of HOCl as proton donor and the terminal 1O atom of HCOCl as acceptor to form red shift hydrogen bond systems. However, the blue-shifted hydrogen bond (2C-3H···6O) coexists with 4Cl···5O interaction in structures S2. As for S4, it uses the 7Cl atom of HOCl as proton donor and the terminal 1O atom of HCOCl as acceptor to form red shift halogen bond system. Interaction energies between monomers in the four complexes corrected with basis set superposition error (BSSE) and zero-point vibrational energy (ZPVE) lie in the range from −5.05 to −14.76 kJ·mol⁻¹ at MP2/6-311++G** level. The natural bond orbital (NBO) and atoms in molecules (AIM) theories have also been applied to explain the structures and the properties of the complexes.     

Theoretical study of the oxidation reactions of methylacrylic acid and methyl methacrylate by triplet O2

The oxidations of organic compounds and polymers by triplet O2 were called "dark oxidation" or "auto-oxidation", in contrast to their "photo-oxidation" by singlet O2. To study the relevant dark oxidation mechanism we take methylacrylic acid (MAA) and methyl methacrylate (MMA) as prototypes to study their reactions with triplet O2 by performing density functional theory calculations. Two reaction channels, the C-H bond oxidation and C=C bond oxidation, have been characterized in detail. The structures of the initial contact charge-transfer complexes, intermediates, transition states, and final oxides involved in the reactions have been localized at the UB3LYP/6-311+G(d,p) level. It is found that the C-H bond in the methyl group connected to the C=C bond presents relatively higher reactivity toward triplet O2 than the C=C bond itself. Thus, the reactions are expected to proceed via the C-H bond oxidation branch at room temperature and also via C=C bond oxidation at elevated temperature. In this sense, an effective method for preventing or retarding the dark oxidations of MAA and MMA in a natural environment is to chemically decorate or protect the C-H bond in the methyl connected to the C=C bond. The present results are expected to provide a general guide for understanding the dark oxidation mechanism of organic compounds and polymers.     

Theoretical Studies on Intermolecular Hydrogen-bond Interactions between Hexamethylenetetramine and Nitric Acid

The structures of the complexes generated by hexamethylenetetramine and nitric acid have been fully optimized by B3LYP method at the 6-311++G** and aug-cc-pVTZ levels. The intermolecular hydrogen-bonding interactions have been calculated by the B3LYP/6-311++G**, B3LYP/aug-cc-pVTZ, MP2(full)/6-311++G** and CCSD(T)/6-311++G** methods, respectively. The NBO (nature bond orbital), AIM (atom in molecule), temperature effect and solvation effect have been analyzed to reveal the origin of the interactions. The results indicate that the stable hydrogen-bonded complexes could be generated by hexamethylenetetramine and nitric acid. The interactions follow the order of (a)>>(e)>(b)>(c)>(d)>(f)>(g). The C-N bonds which are adjacent to the methylene involving the hydrogen bonds tend to break in the chemical reaction. Due to the exothermic process, low temperature is conducive to the formation of the composition, which tallies with the experimental result.     

Tetrahedrane--dossier of an unknown

To probe whether tetrahedrane should be isolable the thermodynamics and kinetics of C4H4 singlet and triplet structures were studied extensively at the CCSD(T)/cc-pVTZ//CCSD(T)/cc-pVDZ, CCSD(T)/cc-pVDZ, CCSD(T)/cc-pVDZ//B3 LYP/6-311G**, and B3 LYP/6-311G** levels of theory. The reaction of cyclopropene with atomic carbon, which was previously suggested to involve tetrahedrane as a reactive intermediate, was re-examined experimentally with low-temperature matrix-isolation techniques. While experimental and theoretical results exclude the intermediacy of tetrahedrane in the above reaction, it is predicted to be an isolable molecule. Among the many C4H4 species, we pay special attention to the electronic effects on the ground state multiplicity of the respective carbenes.     

Thermal Decomposition Kinetics of Ethane Halides and Derivatives（C_2H_（6-n）X_n（n = 1～3）;X = F,Cl,Br）：DFT Study and NBO Analysis

A theoretical study of the thermal decomposition kinetics of ethane halides(C2H6-nXn(n = 1～3);X = F,Cl,Br) has been carried out at the B3LYP/6-31++G** and B3PW91/631++G** levels of theory.Among these methods and comparison of activation parameters with available experimental values,the B3PW91/6-31++G** method is in good agreement with the experimental data.The analysis of bond order and natural bond orbital(NBO) charges,bond indexes,and synchronicity parameters suggest the elimination of HX in reactions 1～9(HF:compounds 1～3,HCl:compounds 4～6,and HBr:compounds 7～9) occur through a concerted and slightly asynchronous four-membered cyclic transition state type of mechanism.     

Theoretical Study and NBO Analysis of the Decomposition Kinetics of Oxetane, 2-Methyloxetane and 2,2-Dimethyloxetane

A theoretical study of the thermal decomposition kinetics of oxetane (1), 2-methyloxetane (2), and 2,2-dimethyloxetane (3) has been carried out at the B3LYP/6-311+G**, B3PW91/6-311+G**, and MPW1PW91/6-311+G** levels of theory. The MPW1PW91/6-311+G** method was found to give a reasonable good agreement with the experimental kinetics and thermodynamic parameters. The decomposition reaction of compounds 1～3 yields formaldehyde and the corresponding substituted olefin. Based on the optimized ground state geometries using MPW1PW91/6-311+G** method, the natural bond orbital (NBO) analysis of donor-acceptor (bond-antibond) interactions revealed that the stabilization energies associated with the electronic delocalization from σC3-C4 bonding to σ*O1-C2 antibonding orbitals decrease from compounds 1 to 3. The σC3-C4→σO1-C2 resonance energies for compounds 1～3 are 2.63, 2.59 and 2.45 kcal mol-1, respectively. Further, the results showed that the energy gaps between σC3-C4 bonding and σ*O1-C2 antibonding orbitals decrease from compounds 1 to 3. Also, the decomposition process in these compounds are controlled by σ→σ* resonance energies. Moreover, the obtained order of energy barriers could be explained by the number of electron-releasing methyl groups substituted to the Csp3 atom (which is attached to oxygen atom). NBO analysis shows that the occupancies of σCsp3-O bonds decrease for compounds 1～3 as 3<2<1, and those of σCsp3-O bonds increase in the opposite order (3 > 2 > 1). This fact illustrates a comparatively easier thermal decomposition of the sCsp3-O bond in compound 3 compared to compound 2, and in compound 2 compared to compound 1. NBO results indicate that these reactions are occurring through a concerted and asynchronous four-membered cyclic transition state type of mechanism.     

Structure and Stability of Interstellar Molecule C_3S

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Stability and properties of oligomeric organoboron structures with six-coordinate carbon atoms at centers of hydrocarbon frameworks

Quantum chemical B3LYP/6-311G** calculations revealed that oligomers of a system containing a six-coordinate carbon atom at the center of a carbon framework composed of three 3,6-diboracyclohexa-1,4-diene rings annelated at double bonds remain energetically stable as the number of monomer units increases up to four. All oligomers have triplet ground states, the singlet states lying about 20 kcal mol^?1 higher in energy. Similar systems with B-B groups replaced by unsaturated (C=C) and saturated (HC-CH) hydrocarbon fragments lose their stability as the length of the oligomer chain increases.     

Theoretical Study on Hydrogen Interaction between 5-Fluorouracil and Glycine

The geometries,electronic structure,IR spectrum and other properties of hydrogen interaction between 5-fluorouracil and glycine were studied at the B3LYP/6-31+G* level.Single point energy calculations were executed at the B3LYP/6-311++G** and B3LYP/aug-cc-pvdz levels,and natural bond orbital (NBO) analysis was carried out at the B3LYP/6-31+G* level.Finally,the hydrogen bonds were discussed via AIM electronic density topology analysis.     

Coupled-cluster study of the electronic structure and energetics of tetrasulfur, S4

Ab initio electronic structure calculations are reported for S4. Geometric and energetic parameters are calculated using the singles and doubles coupled-cluster method, including a perturbutional correction for connected triple excitation, CCSD(T), together with systematic sequences of correlation consistent basis sets extrapolated to the complete basis set limit. The geometry for the ground state singlet C2v structure of S4 is in good agreement with the microwave structure determined for S4. There is a low-lying D2h transition state at 1.6 kcal/mol which interchanges the long S-S bond. S4 has a low-lying triplet state (3B 1u) in D2h symmetry which is 10.8 kcal/mol above the C2v singlet ground state. The S-S bond dissociation energy for S4 into two S2(3Sigma*g) molecules is predicted to be 22.8 kcal mol(-1). The S-S bond energy to form S3+S(3P) is predicted to be 64 kcal/mol.     

CnAl (n=2-11)团簇的结构特征与稳定性

采用密度泛函理论(DFT)的B3LYP方法, 在6-311++G**水平上对CnAl(n=2-11)团簇的几何构型和电子结构进行了结构优化和振动频率计算. 结果表明, n=2的CnAl团簇基态结构为Al原子与两个C原子相连形成的环状结构, n=3-11均为Al原子端基配位的线状结构. 通过对基态结构的能量分析, 得到了n为偶数的CnAl团簇比n为奇数团族稳定的结论.     

Theoretical study on germanium cyanide radical GeCN and its ions

A detailed theoretical study is performed on the hitherto unknown germanium cyanide radical and its ions. The (2)Pi state GeCN lies 5.0 kcal/mol lower than the (2)Pi state GeNC at the coupled-cluster theory including single and double excitations and perturbative inclusion of triple excitations [CCSD(T)]/6-311++G(3df)//quadratic configuration interaction with single and double excitations (QCISD)/6-311G(d)+zero-point vibrational energy (ZPVE) level. For interconversion between them, two electronic state pathways (2)A(') and (2)A(") are located, with the latter being 0.7 kcal/mol more favorable than the former. On the (2)A(") path, the GeCN-->GeNC and GeNC-->GeCN conversion barriers are 14.5 and 9.5 kcal/mol, respectively. The detailed singlet and triplet potential-energy surfaces of both the cationic and anionic GeCN species are also investigated. On the ground-state electronic hypersurface, singlet GeNC(+) is 4.6 kcal/mol more stable than singlet GeCN(+), whereas triplet GeNC(-) is 10.0 kcal/mol less stable than triplet GeCN(-). The relative energy difference between the GeCN(0,+/-) and GeNC(0,+/-) can be well correlated with the number of vacant orbitals on the Ge atom. The stability of the neutral and ionic CGeN and cyclic cGeCN is also discussed. The predicted structures, spectroscopies, ionization, and affinity energies as well as the Renner-Teller properties are expected to provide reliable estimates for future characterization of the potential GeCN and GeNC radicals as well as their ionic counterparts both in the laboratory and in the interstellar space.     

Substituent effects on singlet-triplet gaps and mechanisms of 1,2-rearrangements of 1,3-oxazol-2-ylidenes to 1,3-oxazoles

Electronic structures, partial atomic charges, singlet-triplet gaps (Delta E ST), substituent effects, and mechanisms of 1,2-rearrangements of 1,3-oxazol-2-ylidene ( 5) and 4,5-dimethyl- ( 6), 4,5-difluoro- ( 7), 4,5-dichloro- ( 8), 4,5-dibromo- ( 9), and 3-methyl-1,3-oxazol-2-ylidene ( 10) to the corresponding 1,3-oxazoles have been studied using complete-basis-set methods (CBS-QB3, CBS-Q, CBS-4M), second-order M?ller-Plesset perturbation method (MP2), hybrid density functionals (B3LYP, B3PW91), coupled-cluster theory with single and double excitations (CCSD) and CCSD plus perturbative triple excitations [CCSD(T)], and the quadratic configuration interaction method including single and double excitations (QCISD) and QCISD plus perturbative triple excitations [QCISD(T)]. The 6-311G(d,p), 6-31+G(d,p), 6-311+G(d,p), and correlation-consistent polarized valence double-xi (cc-pVDZ) basis sets were employed. The carbenes have singlet ground states, and the CBS-QB3 and CBS-Q methods predict Delta E ST values for 5- 8 and 10 of 79.9, 79.8, 74.7, 77.0, and 82.0 kcal/mol, respectively. CCSD(T), QCISD(T), B3LYP, and B3PW91 predict smaller Delta E ST values than CBS-QB3 and CBS-Q, with the hybrid density functionals predicting the smallest values. The concerted unimolecular exothermic out-of-plane 1,2-rearrangements of singlet 1,3-oxazol-2-ylidenes to their respective 1,3-oxazoles proceed via cyclic three-center transition states. The CBS-predicted barriers to the 1,2-rearrangements of singlet carbenes 5- 9 to their respective 1,3-oxazoles are 41.4, 40.4, 37.8, 40.4, and 40.5 kcal/mol, respectively. During the 1,2-rearrangements of singlet 1,3-oxazol-2-ylidenes 5- 9, there is a decrease in electron density at oxygen, N3 (the migration origin), and C5 and an increase in electron density at C2 (the migration terminus), C4, and the partially positive migrating hydrogen.     

DFT Calculations of the Elimination Kinetics of Silacyclobutanes and its Methyl Derivatives in the Gas-Phase

Abstract

The gas-phase thermal decomposition kinetics of silacyclobutane (1), 1-methyl- silacyclobutane (2), and 1,1-dimethyl-1-silacyclobutane (3) has been theoretically studied at the B3LYP/6-311G**, B3PW91/6-311G**, and MPW1PW91/6-311G** levels. The B3LYP/6-311G** method was found to give a reasonable good agreement with the experimental kinetics and thermodynamic parameters. The decomposition reaction of compounds 1–3 yields ethylene and the corresponding silene. Based on the optimized ground state geometries using B3LYP/6-311G** method, the natural bond orbital (NBO) analysis of donor-acceptor (bonding–antibonding) interactions revealed that the perturbation energies (E₂) associated with the electronic delocalization from σ_Si1–C2 to σ*_C4–Si1 orbitals increase from compounds 1 to 3. The σ_Si1–C2→σ*_C4–Si1 resonance energies for compounds 1–3 are 1.17, 1.26, and 1.43 kcal/mol, respectively. Also, the decomposition process in these compounds is controlled by σ→σ* resonance energies. Moreover, the obtained order of energy barriers could be explained by the number of electron-releasing methyl groups substituted to the Si_sp2 atom. NBO analysis shows that the occupancies of σ_Si1–C2 bonds decrease for compounds 1–3 as 3 < 2 < 1, and the occupancies of σ*_Si1–C2 bonds increase in the opposite order (3 > 2 > 1). Moreover, these results can fairly explain the decrease of the energy barriers (ΔE_o) of the decomposition reaction of compounds 1 to 3. The calculated data demonstrate that in the decomposition process of the studied compounds, the polarization of the C₃–C₄ bond is the rate determining factor. Analysis of bond orders, NBO charges, bond indexes, synchronicity parameters, and IRC calculations indicate that these reactions are occurring through a concerted and asynchronous four-membered cyclic transition state type of mechanism.     

气相中O3与HSO自由基间的氢键复合物

气相中O3与HSO自由基之间的相互作用及其反应在大气化学中非常重要. 在DFT-B3LYP/6-311++G**和MP2/6-311++G**水平上求得O3+HSO复合物势能面上的稳定构型, B3LYP方法得到了三种构型(复合物I, II和III), 而MP2方法只能得到一种构型(复合物II). 在复合物I和III中, HSO单元中的1H原子作为质子供体, 与O3分子中的端基O原子作为质子受体相互作用, 形成红移氢键复合物; 而在复合物II中, 虽与复合物I和III中具有相同的质子供体和质子受体, 却形成了蓝移氢键复合物. B3LYP/6-311++G**水平上计算的单体间相互作用能的计算考虑了基组重叠误差(BSSE)和零点振动能(ZPVE)校正, 其值在-3.37到-4.55 kJ·mol-1之间. 采用自然键轨道理论(NBO)对单体间相互作用的本质进行了考查, 并通过分子中原子理论(AIM)分析了三种复合物中氢键的电子密度拓扑性质.     

Beyond the metal-metal triple bond in binuclear cyclopentadienylchromium carbonyl chemistry

The cyclopentadienylchromium carbonyls Cp(2)Cr(2)(CO)(n) and Cp*(2)Cr(2)(CO)(n) (Cp = eta(5)-C(5)H(5) and Cp* = eta(5)-Me(5)C(5); n = 3, 2) have been studied by density functional theory using the B3LYP and BP86 functionals. Triplet and singlet structures are found for Cp(2)Cr(2)(CO)(3), with the triplet isomer having an apparent Cr[triple bond, length as m-dash]Cr triple bond (2.295 A by BP86) and predicted to have a lower energy than the singlet isomer having an apparent Cr[quadruple bond, length as m-dash]Cr quadruple bond (2.191 A by BP86). Quintet, septet, and singlet structures, as well as a highly spin contaminated triplet structure, were found for the dicarbonyl Cp(2)Cr(2)(CO)(2). In all of the Cp(2)Cr(2)(CO)(n) (n = 3, 2) structures the carbonyls are asymmetric semi-bridging groups, typically with differences of 0.3-0.5 A between the shortest and longest M-C distances. Very little difference was found between the structures and energetics of the corresponding Cp and Cp* derivatives. These DFT studies suggest that the reported unstable photolytic decarbonylation product of Cp*(2)Cr(2)(CO)(4), characterized only by its infrared nu(CO) frequencies, is the singlet isomer of the tricarbonyl Cp*(2)Cr(2)(CO)(3).     

乙醇-水分子团簇C2H5OH(H2O)n (n=1-9)稳定结构的量子化学研究

采用密度泛函理论B3LYP方法, 在B3LYP/6-311++G(2d,2p)//B3LYP/6-311++G(d,p)基组水平上对乙醇-水分子团簇(C₂H₅OH(H₂O)_n (n=1-9))的各种性质进行研究, 如: 优化的几何构型、结构参数、氢键、结合能、平均氢键强度、自然键轨道(NBO)电荷分布、团簇的生长规律等. 结果表明, 从二维(2-D)环状结构到三维(3-D)笼状结构的过渡出现在n=5的乙醇-水分子团簇中. 此外, 利用团簇结合能的二阶差分、形成能、能隙等性质, 发现在n=6时乙醇-水分子团簇的最低能量结构稳定性较好, 可能为幻数结构. 最后, 为了进一步探讨氢键本质, 将C₂H₅OH(H₂O)_n (n=2-9)最低能量结构的各种性质与纯水分子团簇(H₂O)_n (n=3-10)比较, 结果表明前者与后者中的水分子之间氢键相似.