甲醛与乙腈相互作用的理论研究

在HF/ 6 311G(d ,p)、MP2 / 6 311G(d ,p)和B3LYP/ 6 311G(d ,p)水平上 ,对H2 CO和CH3 CN以及设计的 4种结构H2 CO…CH3 CN复合物等进行几何全优化和振动频率计算 ,排除振动频率为负值的非局域极小点结构 ,并对稳定的环状构型复合物结合能进行基组重叠误差校正和零点振动能校正 .分子间相互作用的能量分解分析显示 ,静电能在H2 CO…CH3 CN相互作用能量中占主导地位 ,电荷转移能居第二位 .     

2-巯基-5-甲基-1, 3, 4-噻二唑分子的拉曼、红外光谱和简正振动分析

实验测量了2-巯基-5-甲基-1, 3, 4-噻二唑分子的拉曼和红外光谱, 采用B3LYP混合泛函和6-31+G(d, p)基函数组, 计算了该分子的最稳定构型和振动频率。以实验频率为标准采用简正振动分析方法得到了该分子各振动频率的势能分布, 从而对其振动频率归属做出了全面地指认。     

2-巯基噻二唑的拉曼、红外光谱、DFT计算和简正振动分析

采用B3LYP混合泛函和6-311G基函数组,并对重原子和轻原子使用离散函数和极化函数,利用密度泛函理论计算了2-巯基噻二唑的分子振动频率。实验测量了2-巯基噻二唑分子的拉曼、红外光谱,以实验频率为标准对分子内力场进行了标度,采用简正振动分析方法得到了各振动模的势能分布,从而对该分子的振动频率归属做出了全面指认。     

7-羟基香豆素红外光谱的密度泛函理论研究

红外光谱是化合物结构鉴定的重要信息来源,对天然有机药物的分子结构及其生物活性研究意义重大。而随着理论计算方法更加合理、计算精度不断提高,理论计算在红外光谱模拟、振动模式归属指认等方面优势更加明显,对红外光谱解析等实验研究具有重要参考价值。本研究利用密度泛函理论(density functional theory, DFT)/B3LYP方法,在6-311G(d,p)基组水平对7-羟基香豆素进行了几何结构优化和红外光谱计算,得到稳定结构及全部振动模式。计算结果显示7-羟基香豆素红外光谱吸收峰主要分布于波数3 700～3 500,3 150～3 000,1 750～1 400,1 400～1 000,1 000～50 cm-1几个区域。除波数3 700～3 500,3 150～3 000 cm-1范围内振动相对独立,分别归属为O—H伸缩振动和芳环C—H伸缩振动外,其他几个区域均较为复杂,谱峰不同程度由多个振动模式叠加而成。最后,根据振动模式理论及振动图像分析,对所有振动模式进行了详细指认。并通过线性回归方法,利用相关系数值r研究了7-羟基香豆素红外光谱主要吸收峰波数理论计算值和实验数据的相关性。结果表明,计算值和实验值基本吻合,相关系数值等于0.998 5,相关性较好;采用密度泛函理论在该基组水平对7-羟基香豆素红外光谱的理论计算较为可靠。     

乙酰苯胺分子的拉曼、红外光谱和简正振动分析

分别在3 500～50和3 500～600 cm-1范围内实验测量了乙酰苯胺(ACN)分子的拉曼和红外光谱。运用密度泛函理论(DFT)采用B3LYP 混合泛函和6-311G(d, p)基函数组,计算了该分子的平衡构型和振动频率。结果表明：理论计算的分子最优化构型参数与以往文献报道的实验数据吻合,优于以往由6-31G(d)基函数组计算得到的参数;理论计算的振动频率值和本实验的观测值吻合得较好。运用简正振动分析方法得到了ACN 分子各振动频率的势能分布(PED),对ACN 分子的振动频率归属做出了全面、准确指认。     

邻苯二甲酸酐分子振动光谱的实验和理论研究

分别在3500~100和3500~500cm-1范围内测量了邻苯二甲酸酐分子的拉曼和红外实验光谱,同时利用密度泛函理论中的B3LYP混合泛函方法和6-311G(d,p)基函数组,计算了该分子的平衡构型和振动频率,及其拉曼和红外光谱强度,结果表明:理论计算和实验结果较好的符合。最后采用简正振动分析方法得到了各振动模的能量分布,从而对该分子的振动频率归属做出了全面指认。     

2,4,6-三甲氧基苯-1-O-D葡萄糖苷的核磁共振谱的理论研究

应用规范不变原子轨道GIAO法,分别在HF/6-311+G(2d,p)//B3LYP/6-31G(d)和HF/6-311+G(2d,p)//B3LYP/6-31G(d,p)水平上,计算了从卫茅科南蛇藤属植物苦皮藤中分离鉴定出的2,4,6-三甲氧基苯-1-O-D葡萄糖苷(化合物1)的α和β分子构型的1HNMR和13CNMR的化学位移值,并对理论计算值与实验值的误差进行了统计分析,其中β分子构型的计算值与实验值较为接近,结合α和β分子构型的总能量计算值,预测化合物1分子应择型于β构型,即为2,4,6-三甲氧基苯-1-O-β-D葡萄糖苷,这与根据糖的端基质子化学位移和耦合常数实验值(δH=4.81,J=7.3Hz)推断的结论相吻合,进一步说明理论计算的合理性.     

柠檬酸分子振动光谱研究

实验测量了柠檬酸分子的拉曼与红外光谱,利用密度泛函B3LYP方法和6-311G(d,p)基函数组,计算了柠檬酸分子的平衡构型、振动频率、拉曼和红外强度,并利用GAR2PED程序得到了各振动模的势能分布,从而对其振动频率归属做出了全面指认。同时分析了分子间的氢键对光谱的影响。     

4-氟苯甲醛酪氨酸席夫碱的制备及其振动光谱的密度泛函理论和从头算理论计算的研究

4-氟苯甲醛酪氨酸席夫碱(4-FT)由4-氟苯甲醛和L-酪氨酸钾盐在室温条件下反应制得,4-FT的结构通过1HNMR,FTIR和Raman测试得到确认。分别用密度泛函(DFT,density functional theory)理论的B3LYP(Becke’s three-parameter exchange functional(B3)with Lee,Yang,Parr(LYP))方法和从头算(ab initio)理论的HF(Hartree-Fock)方法,选用标准的6-31G**和6-31G*基组对化合物4-FT的几何构型进行优化。同时分别在B3LYP/6-31G**,B3LYP/6-31G*,HF/6-31G**和HF/6-31G*水平下计算4-FT的振动波数。用密度泛函(DFT)的B3LYP方法计算并校正后的波长数据比用从头算(ab i-nitio)的HF方法计算的结果更与实验数据吻合。     

还原态烟酰胺腺嘌呤二核苷酸拉曼光谱研究

还原态烟酰胺腺嘌呤二核苷酸(NADH)在维持细胞生长、分化、能量代谢以及细胞保护方面起着非常重要的作用,NADH的无创在体检测具有非常重要的意义。运用激光拉曼散射实验和密度泛函理论(DFT)计算研究了200～3 300 cm-1光谱范围内NADH分子的振动模式特性。DFT计算采用了B3LYP杂化方法,并选用了极化6-311+G(d,p)基组。为了准确的分析NADH分子的振动模式和频率,首先运用B3LYP/6-311+G(d,p)理论对NADH分子的基态结构进行了几何优化,并计算了基态结构NADH分子的各个键长和键角。同时考虑到DFT计算中的非谐性,运用波数线性标度方法对所有计算所得振动模式波数重新进行了标度。重新标度后,DFT计算所得的振动模式波数与激光拉曼散射实验观测到的拉曼峰波数吻合的很好：在200～3 300 cm-1整个光谱范围内,计算与实验结果具有非常好的线性相关性,而且大部分振动模式的计算与实验之间的偏差都小于5 cm-1。此外,讨论了实验观察所得拉曼光谱的分子振动模式归属,分析了NADH分子中腺嘌呤、烟酰胺、及二核苷酸的特征振动模式,并初步提出了运用拉曼光谱实现NADH快速准确无创在体检测的方法。位于732 cm-1处的拉曼峰是腺嘌呤的特征振动模式,而且可以选为检测NADH分子的最特征拉曼峰。位于1 690 cm-1处的拉曼峰是烟酰胺的特征振动模式,可以选为进一步准确检测NADH分子的另一个特征拉曼峰。位于1 086和1 339 cm-1两处拉曼峰的组合可以作为二核苷酸的特征振动模式,用于进一步更准确的检测NADH分子。所以在运用拉曼光谱法实现NADH快速准确无创在体检测时,可以首先运用位于732 cm-1处NADH分子的最特征振动模式进行快速检测,然后再运用位于1 690 cm-1及1 086和1 339 cm-1组合等特征振动模式进行准确分析。     

Scaled DFT Force Constants and Vibrational Spectrum of Cyclopropylamine

Abstract

The molecular structure and harmonic vibrational frequencies of cyclopropylamine have been calculated using the B3LYP density functional method with the 6‐31G(2d,2p) basis set. The scaled DFT force field gives very good reproduction of the experimental vibrational frequencies. Several of the vibrational fundamental modes assigned previously are reassigned on the basis of the B3LYP/6‐31G(2d,2p) method and the scaled force field calculations. The optimized scaling factors were used to scale the B3LYP/6‐31G(2d,2p) force field of cyclopropane and cyclopropylamine (–ND₂) molecules.     

The molecular structures, vibrational spectroscopies (FT-IR and Raman) and quantum chemical calculations of n-alkyltrimethylammonium bromides

The FT-IR and micro-Raman spectra of three n-alkyltrimethylammonium bromides (dodecyltrimethylammonium bromide (DTAB), tetradecyltrimethylammonium bromide (TTAB) and hexadecyl(cetyl)trimethylammonium bromide (CTAB)) in powder form were recorded in the regions 4000–550 cm^?1 and 3200–300 cm^?1, respectively. The optimized geometries and vibrational frequencies of DTAB, TTAB and CTAB have been carried out with ab initio Hartree-Fock (HF) and density functional theory method B3LYP calculations with the 6–31 G (d, p) basis set in the ground state. The comparison of the observed fundamental vibrational frequencies and calculated results for the fundamental vibrational frequencies of DTAB, TTAB and CTAB indicate that the scaled B3LYP method is superior compared to the scaled HF method.     

Molecular structure,NMR and vibrational spectral analysis of 2,4‐difluorophenol by ab initio HF and density functional theory

Quantum chemical calculations of energies, geometries and vibrational wavenumbers of 2,4‐difluorophenol (2,4‐DFP) were carried out by using ab initio HF and density functional theory (DFT/B3LYP) methods with 6‐311G(d,p) as basis set. The optimized geometrical parameters obtained by HF and DFT calculations are in good agreement with related molecules. The best level of theory in order to reproduce the experimental wavenumbers is the B3LYP method with the 6‐311G(d,p) basis set. The difference between the observed and scaled wavenumber values of most of the fundamentals is very small. A detailed interpretation of the infrared and Raman spectra of 2,4‐DFP is also reported. The entropy of the title compound was also performed at HF/6‐311G(d,p) and B3LYP/6‐311G(d,p) levels of theory. The isotropic chemical shift computed by ¹H, ¹³C NMR analyses also shows good agreement with experimental observations. The theoretical spectrograms for FT‐IR and FT‐Raman spectra of the title molecule have been constructed. Copyright © 2009 John Wiley & Sons, Ltd.     

对巯基苯胺分子构象和拉曼光谱的密度泛函理论研究

本文采用密度泛函方法B3LYP/6-311+G**计算了对巯基苯胺分子(PATP)的平衡结构和振动拉曼光谱。结果表明该分子有两个稳定构象,反式构象能更低。利用振动模分析所得的势能分布我们对该分子振动基频进行了归属,并计算了低能构象的标度振动频率,其结果与实验值相吻合。     

硝酸丙酯结构、振动频率和热力学性质的密度泛函理论研究

用密度泛函理论(DFT)研究硝酸丙酯化合物的分子结构、振动光谱和热力学等基本性质.取BLYP、B3LYP方法和6-31G*、6-31G**、6-311G*、6-311G**基组,对硝酸丙酯分子的几何构型进行全优化计算并分析其电子结构性质.和考虑了二级相关能校正的MP2/6-311G*计算结果比较表明,B3LYP/6-31G*是研究许多较大体系化合物卓有成效和颇有前途的方法.在B3LYP/6-31G*的水平上对优化后的结构进行了正则振动频率分析,用因子0.95校正后的振动光谱和实验结果比较,符合较好.进一步     

Computational Studies on the Ground State Tautomer,Hydrogen Conformations and Vibrational Spectroscopic Analysis of Antitumor Agents:3-Deazauracil and 6-Azauracil

The ground state hydrogen conformations and vibrational analysis of 3-deazauracil (3DAU) and 6-azauracil (6AU) tautomers (4-enol and 2,4-diol forms) have been calculated using ab initio Hartree-Fock (HF) and density functional theory (B3LYP) methods with 6-311++G(d,p) basis set level. The calculations have shown that the most probably preferential tautomer of 3DAU and 6AU are the 4-enol form, which gives best fit to the corresponding experimental data. The ground state conformer of the 2,4-diol form has two O-H bonds which are oriented externally and internally (to the N-H bond). The vibrational analyses of the ground state conformer of each tautomeric form of 3DAU and 6AU were done and their optimized geometry parameters (bond lengths and bond angles) were given. Furthermore, from the correlations values it was concluded that the B3LYP method is superior to the HF method for both the vibrational frequencies and the geometric parameters.     

Quantum-chemical calculation on 5-phenyl-2-(4-pyridyl)pyrimidine

The molecular geometry and vibrational frequencies of 5-phenyl-2-(4-pyridyl)pyrimidine in the ground state have been calculated by the density functional theory with B3LYP/6-311G(d) as the basis set. The observed frequencies of 5-phenyl-2-(4-pyridyl)pyrimidine and those calculated are nearly the same. The form of the modes for all fundamentals is based on potential energy distribution calculations.     

Structural and spectroscopic investigation of the N-methylformamide–water (NMF···3H2O) complex

In this work, theoretical studies on the structure, molecular properties, hydrogen bonding, and vibrational spectra of the N-methylformamide–water (NMF···3H₂O) complex will be presented. The molecular geometry was optimised by using Hartree–Fock (HF), second Møller–Plesset (MP2), and density functional theory methods with different basis sets. The harmonic vibrational frequencies are computed by using the B3LYP method with 6-311++G(d,p) as a basis set and then scaled with a suitable scale factor to yield good coherence with the observed values. The temperature dependence of various thermodynamic functions (heat capacity, entropy, and enthalpy changes) was also studied. A detailed analysis of the nature of the hydrogen bonding, using natural bond orbital (NBO) and topological atoms in molecules theory, has been reported.     

Natural Bond Orbitals(NBO),Natural Population Analysis,Mulliken Analysis of Atomic Charges of 2-[(2,3-Dimethylphenyl)Amino]Benzoic Acid

The spectroscopic properties of the FT-IR and FT-Raman spectra of the 2-[(2,3-dimethylphenyl)amino]benzoic acid (DMPABA) compound have been recorded in the region 4 000～400 cm-1. The molecular structure, vibrational wavenumbers were calculated using DFT (B3LYP) method with 6-31G(d,p) and 6-311++G(d,p) basis sets. The Geometrical structure, vibrational frequencies, corresponding vibrational assignments of 2-[(2,3-dimethylphenyl)amino]benzoic acid (DMPABA) have been investigated experimentally and theoretically using Gaussian03 software package. The detailed Molecular orbital calculation such as Natural Bond Orbitals (NBO), Natural Population Analysis (NPA) and Mulliken analysis of atomic charges is also calculated.