DNAzyme amplification of molecular beacon signal

This paper reports an improved catalytic molecular beacon. Addition of the target oligonucleotide activates a DNA enzyme (DNAzyme), which, in turn, activates multiple copies of molecular beacons (MB) and gives rise to a strong fluorescence signal. In a previous design, the activated DNAzyme could oligomerize, especially dimerize, and result in inactivation of the DNAzyme. The current design avoids this problem, upon activated by the target DNA, the DNAzyme will stay constantly active. With the improved method, a detection of 10 pM DNA has been demonstrated, which is 1000 times more sensitive than the method previously reported.     

Imaging Endogenous Metal Ions in Living Cells Using a DNAzyme–Catalytic Hairpin Assembly Probe

DNAzymes are a promising platform for metal ion detection, and a few DNAzyme‐based sensors have been reported to detect metal ions inside cells. However, these methods required an influx of metal ions to increase their concentrations for detection. To address this major issue, the design of a catalytic hairpin assembly (CHA) reaction to amplify the signal from photocaged Na⁺‐specific DNAzyme to detect endogenous Na⁺ inside cells is reported. Upon light activation and in the presence of Na⁺, the NaA43 DNAzyme cleaves its substrate strand and releases a product strand, which becomes an initiator that trigger the subsequent CHA amplification reaction. This strategy allows detection of endogenous Na⁺ inside cells, which has been demonstrated by both fluorescent imaging of individual cells and flow cytometry of the whole cell population. This method can be generally applied to detect other endogenous metal ions and thus contribute to deeper understanding of the role of metal ions in biological systems.     

基于酶辅助靶标循环的适体传感器灵敏检测中药中黄曲霉毒素B1

该文基于酶辅助靶标循环信号放大策略构建了用于黄曲霉毒素B1(AFB1)高灵敏检测的化学发光适体传感器。以G-四链体/氯化血红素DNA酶为信号分子设计了免标记的适体探针H1-S1和发夹探针H2。适体探针结合目标AFB1,在核酸外切酶I辅助下,触发靶标循环反应产生发夹H1。发夹H1与H2杂交,释放出完整的G-四链体序列,并进一步与氯化血红素结合形成G-四链体/氯化血红素DNA酶。DNA酶通过催化氧化鲁米诺-H2O2化学发光体系产生化学发光信号,实现AFB1的放大检测。在最优实验条件下,化学发光强度与AFB1质量浓度的对数在0.001~100 ng/mL范围内呈良好的线性关系,相关系数(r2)为0.9955,检出限为0.93 pg/mL,回收率为93.7%~107%。该适体传感器操作简单、灵敏度高、特异性好,在黄曲霉毒素污染检测方面具有良好的应用前景。     

DNA G-四链体的结构完整性对催化性质的影响

DNA酶中的G-四链体-血红素(G4-hemin)DNA酶结构具有较高的设计性和化学稳定性,因此格外受研究者关注.G-平面作为辅酶因子hemin的结合位点,不仅提供大π平面与hemin结合,而且其平面上的G碱基还可以充当近端配位基团与hemin进行配位.因此,研究G-平面完整性在G4-DNA酶体系中的作用具有重要意义.本文设计了一系列含有空位的G4(G-vacancy,GV)及G-三链体,通过“鸟嘌呤类似物插入”策略实现G-平面完整性以及DNA酶催化活性的恢复.结果表明,末端G-平面完整性是G4-DNA酶具有催化活性的必要条件,且其能够充当近端配位基团与末端碱基协同激活G4-DNA酶.考虑到hemin会选择性地结合于G4的3’-端平面,本文以含有3’-端空位的G4以及G-三链体为模型进行DNA酶的构建.结果表明,相较于末端完整的G4-hemin DNA酶,末端不完整的G4结构所形成的DNA酶催化活性很低.为了进一步验证该平面完整性的重要性,本文提出了“鸟嘌呤衍生物插入”策略,即将鸟嘌呤衍生物(无环鸟苷和鸟苷)插入G-空位以恢复G-平面的完整性.通过圆二色光谱和紫外熔解实验,发现末端平面完整性的缺失会使圆二色特征峰信号和G4结构热稳定性下降,而鸟嘌呤碱基类似物的加入则可以使特征峰信号以及热稳定性得到一定程度的恢复,表明鸟嘌呤碱基类似物的加入确实使G-平面完整性得到恢复.与此同时,随着鸟嘌呤碱基类似物浓度的增加,G4-hemin DNA酶活性逐渐增强,最终恢复至与完整G4一样的活性.在以G-三链体为模型的实验中,本文通过另一条富G序列与G-三链体进行结合,形成复合的(3+1)型G4结构,最终实现了DNA酶活性的恢复.同时,在3’-G-平面末端增加了激活碱基(dA或dTC),结果表明,即使G-平面不完整,末端碱基依旧能够激活DNA酶,但酶活性整体弱于完整G4时的活性.同样,“鸟嘌呤衍生物插入”策略可以使酶活性得到恢复.本文系列实验充分说明了末端碱基可与G-平面形成协同作用,与hemin的铁中心共同形成六配位关系,加速催化中间体生成,进而增强催化活性.有趣的是,通过设计Holliday junction结构研究发现,“鸟嘌呤衍生物插入”策略仅适用于平行G4结构.G-空位的存在不仅降低了G4结构的稳定性,而且降低了其与hemin间的亲和力,二者均是造成G4-DNA酶催化能力下降的主要因素.总之,本文证明了3’-端G-平面的完整性是G4-DNA酶实现其催化能力必不可少的因素,对理解末端G-平面在G4-DNA酶中的作用具有重要的参考意义.     

一种便携快速测量水中铅和镉含量的仪器-ANDalyze

快速测量污染水中重金属元素含量对于监测野外突发污染至关重要.建立了使用以生物酶（DNA酶）为原理的便捷仪器快速测定污染水中铅（Pb）和镉（Cd）元素含量的方法.使用生物酶传感器对标准溶液进行测量,根据溶液推荐和测量浓度之间的线性关系对仪器进行校准后,可测量的质量浓度范围:Pb为2~100 μg/L,Cd为0.1~1.0 mg/L.仪器可以在3~5 min内方便快速完成重金属的现场测量,使用DNA酶可以快速获得污染水中的微量金属元素含量,有利于野外重金属污染的即时测量.     

Prefolded Synthetic G‐Quartets Display Enhanced Bioinspired Properties

A water‐soluble template‐assembled synthetic G‐quartet (TASQ) based on the use of a macrocyclodecapeptide scaffold was designed to display stable intramolecular folds alone in solution. The preformation of the guanine quartet, demonstrated by NMR and CD investigations, results in enhanced peroxidase‐type biocatalytic activities and improved quadruplex‐interacting properties. Comparison of its DNAzyme‐boosting properties with the ones of previously published TASQ revealed that, nowadays, it is the best DNAzyme‐boosting agent.     

Near‐Infrared Photothermally Activated DNAzyme–Gold Nanoshells for Imaging Metal Ions in Living Cells

DNAzymes have enjoyed success as metal ion sensors outside cells. Their susceptibility to metal‐dependent cleavage during delivery into cells has limited their intracellular applications. To overcome this limitation, a near‐infrared (NIR) photothermal activation method is presented for controlling DNAzyme activity in living cells. The system consists of a three‐stranded DNAzyme precursor (TSDP), the hybridization of which prevents the DNAzyme from being active. After conjugating the TSDP onto gold nanoshells and upon NIR illumination, the increased temperature dehybridizes the TSDP to release the active DNAzyme, which then carries out metal‐ion‐dependent cleavage, resulting in releasing the cleaved product containing a fluorophore. Using this construct, detecting Zn²⁺ in living HeLa cells is demonstrated. This method has expanded the DNAzyme versatility for detecting metal ions in biological systems under NIR light that exhibits lower phototoxicity and higher tissue penetration ability.     

Paper-based scanometric assay for lead ion detection using DNAzyme

A facile and simple paper-based scanometric assay was developed to detect Pb²⁺ using GR5-DNAzyme. Magnetic beads (MBs) and gold nanoparticles (AuNPs) were used as a signal collector and a signal indicator, respectively. They were linked together by GR5-DNAzyme, comprising an enzyme and a substrate strand pairing up with each other. In the presence of Pb²⁺, the substrate strand is cut into two pieces, resulting in the disassembly of AuNPs from the MBs. These AuNPs were spotted on predefined areas on a chromatography paper, where signal is amplified through silver reduction. This sensing platform exhibits high sensitivity and selectivity toward Pb²⁺, giving a detection limit of 0.3 nM and a linear fitting range from 0.1 to 1000 nM. Testing of this biosensor in river water and synthetic urine samples also showed satisfying results. Besides offering simultaneous and multi-sample analysis, this paper-based sensing platform presented here could be potentially applied and served as a general platform for on-site, naked eyes, and low-cost monitoring of other heavy metal ions in environmental and body fluid samples.     

基于DNA酶催化增敏的微流控顺序注射化学发光法检测钾离子的研究

基于G-四联体/血红素形成的DNA酶催化增敏鲁米诺-H2O2发光反应原理,建立了微流控顺序注射化学发光检测K+的新方法。在K+的促进作用下,富含鸟嘌呤的寡核苷酸PS5.M折叠成G-四联体,并对血红素表现出较高的亲合力,形成DNA酶,显著地增强血红素的类辣根过氧化物酶活性,催化鲁米诺-H2O2化学发光反应。在优化的实验条件下,化学发光检测K+的线性范围为1.0~700μmol·L-1,检出限为0.54μmol·L-1,用100μmol·L-1的K+形成的DNA酶连续测定10次,相对标准偏差(RSD)为1.61%。常见的碱金属和碱土金属离子均无显著干扰。该方法可用于真实水样中K+的分析,测定结果与原子吸收法一致。