Biosynthesis of Indole Diterpene Lolitrems: Radical-Induced Cyclization of an Epoxyalcohol Affording a Characteristic Lolitremane Skeleton

Lolitrems are tremorgenic indole diterpenes that exhibit a unique 5/6 bicyclic system of the indole moiety. Although genetic analysis has indicated that the prenyltransferase LtmE and the cytochrome P450 LtmJ are involved in the construction of this unique structure, the detailed mechanism remains to be elucidated. Herein, we report the reconstitution of the biosynthetic pathway for lolitrems employing a recently established genome-editing technique for the expression host Aspergillus oryzae. Heterologous expression and bioconversion of the various intermediates revealed that LtmJ catalyzes multistep oxidation to furnish the lolitrem core. We also isolated the key reaction intermediate with an epoxyalcohol moiety. This observation allowed us to establish the mechanism of radical-induced cyclization, which was firmly supported by density functional theory calculations and a model experiment with a synthetic analogue.     

Synthesis of C12-Keto Saxitoxin Derivatives with Unusual Inhibitory Activity Against Voltage-Gated Sodium Channels

A novel series of C12-keto-type saxitoxin (STX) derivatives bearing an unusual nonhydrated form of the ketone at C12 has been synthesized, and their Na_V-inhibitory activity has been evaluated in a cell-based assay as well as whole-cell patch-clamp recording. Among these compounds, 11-benzylidene STX ( 3 a ) showed potent inhibitory activity against neuroblastoma Neuro 2A in both cell-based and electrophysiological analyses, with EC₅₀ and IC₅₀ values of 8.5 and 30.7 nm , respectively. Interestingly, the compound showed potent inhibitory activity against tetrodotoxin-resistant subtype of Na_V1.5, with an IC₅₀ value of 94.1 nm . Derivatives 3 a – d and 3 f showed low recovery rates from Na_V1.2 subtype (ca 45–79 %) compared to natural dcSTX ( 2 ), strongly suggesting an irreversible mode of interaction. We propose an interaction model for the C12-keto derivatives with Na_V in which the enone moiety in the STX derivatives 3 works as Michael acceptor for the carboxylate of Asp¹⁷¹⁷.     

Construction of binary LCD codes,ternary LCD codes and quaternary Hermitian LCD codes

We give two methods for constructing many linear complementary dual (LCD for short) codes from a given LCD code, by modifying some known methods for constructing self-dual codes. Using the methods, we construct binary LCD codes and quaternary Hermitian LCD codes, which improve the previously known lower bounds on the largest minimum weights.

     

Synthesis and Characterization of Novel Liquid Crystalline Epoxy Resin with Low Melting Point

A liquid crystalline epoxy resin (LCE) having α-methylstilbene as a mesogenic unit and an ethylene-oxy unit as a spacer (DGE(C2-MS-C2)) was synthesized and characterized. DGE (C2-MS-C2) has a lower melting point (MP) compared to the diglycidylether of 4,4′-dihydroxy-α-methylstilbene (DGEDHMS). The curing of DGE (C2-MS-C2) with diaminodiphenylethane (DDEt) in a mesophase generated a liquid crystalline (LC) network, which have a more highly layered structure than DGEDHMS. The LC network showed extensively large fracture energy on a tensile test. Introducing spacers outside the mesogen unit promotes the mesogen unit to form a highly ordered structure, which enhances the versatility of LC epoxy resins.     

Enhanced conformational sampling method for proteins based on the TaBoo SeArch algorithm: Application to the folding of a mini‐protein,chignolin

The conformational samplings are indispensible for obtaining reliable canonical ensembles, which provide statistical averages of physical quantities such as free energies. However, the samplings of vast conformational space of biomacromolecules by conventional molecular dynamics (MD) simulations might be insufficient, due to their inadequate accessible time‐scales for investigating biological functions. Therefore, the development of methodologies for enhancing the conformational sampling of biomacromolecules still remains as a challenging issue in computational biology. To tackle this problem, we newly propose an efficient conformational search method, which is referred as TaBoo SeArch (TBSA) algorithm. In TBSA, an inverse energy histogram is used to select seeds for the conformational resampling so that states with high frequencies are inhibited, while states with low frequencies are efficiently sampled to explore the unvisited conformational space. As a demonstration, TBSA was applied to the folding of a mini‐protein, chignolin, and automatically sampled the native structure (C_α root mean square deviation < 1.0 Å) with nanosecond order computational costs started from a completely extended structure, although a long‐time 1‐µs normal MD simulation failed to sample the native structure. Furthermore, a multiscale free energy landscape method based on the conformational sampling of TBSA were quantitatively evaluated through free energy calculations with both implicit and explicit solvent models, which enable us to find several metastable states on the folding landscape. © 2015 Wiley Periodicals, Inc.     

On the classification of weighing matrices and self‐orthogonal codes

We provide a classification method of weighing matrices based on a classification of self‐orthogonal codes. Using this method, we classify weighing matrices of orders up to 15 and order 17, by revising some known classification. In addition, we give a revised classification of weighing matrices of weight 5. A revised classification of ternary maximal self‐orthogonal codes of lengths 18 and 19 is also presented. © 2011 Wiley Periodicals, Inc. J Combin Designs 20:40–57, 2012