共价键极性的讨论

根据元素原子在不同化学环境下吸引电子能力的差异性,指出了化学环境对极性共价键和非极性共价键的影响。     

Kirchhoff atomic charges fitted to multipole moments: implementation for a virtual screening system

The Kirchhoff charge model is a viable method of generating inexpensive and electrostatically reasonable atomic charges for molecular mechanical force fields. The charging method uses a computationally fast algorithm based on the principle of electronegativity relaxation. Parameters of the method, orbital electronegativities and hardnesses, are fitted to reproduce reference, ab initio calculated dipole and quadrupole moments of a representative training set of neutral and charged organic molecules covering most medicinal chemistry relevant bonding situations. Transferability and accuracy of the derived parameters are confirmed on an external test set. Comparisons to other charge models are made. Implementation of the new Kirchhoff charges into a virtual screening engine is elucidated.     

有机污染物的生物富集因子与拓扑指数的数学模型

依据价连接性指数(xi)、电性拓扑态指数(ej)及电性距离矢量(mk)构建239种有机污染物生物富集因子(FBC)的6参数QSFR(定量结构-生物富集因子相关性)模型, 不仅相关程度高, 而且所用自变量数少. 该模型的传统相关系数(R2)为0.821, LOO(levae-one-out)交互验证系数(Q2)为0.809, 证明具有良好的稳健性及预测能力. 根据进入该模型的6个参数可知, 影响有机污染物FBC的主要结构基团是: —C—、>C—、—O—、—X、—NH2以及分子的柔韧性、折叠程度等空间因素. 可以认为在生物富集过程中,“诱导契合机理”也发挥一定作用. 对自变量集进行正交变换, 既不影响模型的相关性, 又能降低其自相关性.     

光合释氧机理的ABEEM/MM/MD和BS-DFT理论研究

建立了S₂态光合释氧络合物（OEC）的原子-键电负性均衡模型（ABEEMσπ）的电荷参数,并使用ABEEM/MM/MD可极化力场的分子动力学模拟和对称性破损的DFT研究了光合作用制造氧气的微观机制.HF/STO-3G（采用此基组的原因请见引用文献）水平下的电荷拟合结果证明了ABEEMσπ模型计算电荷分布的合理性和高效性.MD模拟显示,S₂态Mn₄CaO₅的双向异构化过程伴随Ca上的水分子W3转移至Mn1（III）/Mn4（III）,它很可能作为底物水之一,与O5在S₄态结合产生O₂.基于此,考察了全自旋态下两种异构体形式中O－O键形成的自由基耦合机理.BS-DFT计算结果表明,开立方结构的释氧活性大大优于闭立方结构,金属锰和氧自由基的自旋耦合方式也是反应性的决定性因素,同时,OEC的结构灵活性对于S态循环和光合水分解至关重要.     

超导材料的各向异性特征与超导转变温度T_c

在本文中,以电声子机制超导电性理论为基础,用电负性均衡原理研究了由于超导材料的各向异性引起的电子态密度分布的不均匀性,晶格稳定性的差异性及超导材料中元素成键特征对超导转变温度影响的特征,提出了在各向异性的超导材料中电声子机制可以产生高的超导转变温度Tc.     

电负性均衡

电负性是分子中一个原子把电子拉向它自身的能力,是化学理论的基本概念之一。继Pauling建立第一个电负性标度后,提出了众多的电负性标度。只是在密度泛函理论的基础上,电负性概念和电负性均衡原理,才被精密地论证。近二十多年来,电负性理论的重要发展是:应用电负性均衡模型或方法,可以快速地计算分子体系的电荷分布,从而确定分子的其他性质,甚至包括分子的结构和反应性指标。通常的电负性均衡方法只把分子划分到原子区域,虽然简单直观,但其精度和应用范围受到限制。原子与键电负性均衡方法,把分子划分到包括原子区域、化学键区域和孤对电子区域,能够较快速精密地计算分子的电荷分布和其他性质,并被应用到构建新一代可极化或浮动电荷力场的探索中,有广阔的应用前景。     

DFT study on the effect of relative positions of methyl-, nitro- and N→oxide groups on the molecular structure,thermal/kinetic stability,crystal density,heat of decomposition and performance characteristics of triazolones

Methyl-, nitro- and N→oxide substituted triazolones are of interest in the contest of high-energy density compounds and have been found to have true local energy minima at the B3LYP/aug-cc-pVDZ level. The optimised structures, harmonic frequencies and thermodynamic values for all the model molecules have been obtained in their ground state. The velocity of detonation (D) and detonation pressure (P) have been evaluated by the Kamlet–Jacob equations using the crystal density and the heat of explosion. The estimated performance properties are higher (D = 9.92–10.27 km/s, P = 48.10–52.52 GPa) compared with 2,4,6,8,10,12-hexanitro-2,4,6,8,10,12-hexaazaisowurtzitane (D = 9.20 km/s, P = 42.0 Gpa). The higher densities are possibly due to the intramolecular hydrogen bonds and the layered structures in the crystal lattice. We speculate that the calculated heat of explosion and the density are for the gas phase compounds and in the reality they should be for the solid phase which would diminish the magnitude of the calculated values. The –N→O and –NO₂ group leads to the desirable consequences of higher heat of explosion and diminished sensitivities. The substituting of N–H hydrogen atom(s) of triazolones for a –CH₃ group decreases melting point, heat of formation and density; however, the methyl group increases the thermal stability.     

Electronegativity Scaled as a Average Attracting Energy of Valence‐Shell Electrons in a Ground‐State Free Atom

The total capability of an atom attracting valence electrons can be measured by the sum of ionization energies of valence electron in a ground‐state free atom plus its electron affinity called Total Attracting Energy, TAE = Σn_iE_i + EA, where, E_i is the ionization energy of the ith valence‐shell electron in a ground‐state free atom, n_i is the number of valence‐shell electron bearing energy E_i, and EA is the electron affinity. And the electronegativity χ_CL is proportional to the average of TAE, AAE = TAE_av, divided by Σn_i, the number of atomic valence‐shell electrons. χ_CL = 0.1813 TAE_av = 0.1813 AAE = 0.1813 TAE/Σn_i, = 0.1813 (Σn_iE_I + EA)/Σn_i. Further, the atomic valence orbital electronegativity can be also obtained from the TAE value of an atom. Some discussions were made on several special aspects such as scale of rare gases, comparisons with Pauling's and Allen's scales, etc.     

烷烃同系物气相色谱保留指数的分子拓扑研究

定义了分子中原子的平衡电负性,并用原子的平衡电负性对分子图进行着色,在距离矩阵的基础上结合分子中各原子的支化度构建了一种新的拓扑指数N1,N2和N3。该拓扑指数对分子结构实现惟一性表征,具有优良的结构选择性。将拓扑指数N1,N2和N3与烷烃在固定相角鲨烷(柱温50　℃)及SE-30(柱温80　℃)上的气相色谱保留指数进行多元线性回归,结果表明烷烃的气相色谱保留指数可分别定量描述为I(Squalane)=23.97842N1-3.86562N2+0.787379N3+42.33061,I(SE-30)=23.83937N1-3.5687N2+0.939876N3+22.11952。用上述回归方程对烷烃的气相色谱保留指数进行预测,结果表明预测值与实验值的平均相对误差均为1.31%,预测结果误差在实验误差范围内。