细菌视紫红质／聚乙烯醇复合膜的制备及相关功能研究

细菌视紫红质（bR)是一种独特的光敏蛋白，具有光致变色和光驱质子泵功能 。将bR蛋白包埋于聚乙烯醇（PVA）基质中，制备了bR/PVA复合膜。利用紫外－可 见分光光度计和自制的毫秒级动力学光谱仪，检测了样品的吸收光谱和光循环M中 间体在脉冲光激发下随时间的变化；同时，利用凝胶扫描成像仪及相关分析软件考 察了样品成膜后的均匀程度。实验表明：bR/PVA复合膜具有良好的均匀性、透明性 和力学性能，而且bR蛋白保持了原有的生物活性和光学性质，bR与M中间体之间能 达到一种光可控制的双稳态，M中间体的寿命也得到了显著的延长，证实了bR可以 提供一个用于信息存储的模型材料。     

Photocycle of 13-cis-retinal in bacteriorhodopsin caused by destruction to the cooperative effect of purple membrane

The steady absorption and kinetic changes of M₄₁₂ intermediate of the light- and dark-adapted bacteriorhodopsin (BR) solubilized by different concentrated Triton X-100 were investigated. The results indicated that the cooperative effect existing within the trimeric BR of native purple membrane (PM) was damaged in the system containing the surfactant since the component and structure of the bilayer lipid membrane in PM varied due to the solubilization of partial PM lipids by Triton X-100. The destruction to the cooperative effect of BR ultimately caused 13-cis-retinal of the dark-adapted BR to take part in BR photocycle and also to generate the deprotonated M₄₁₂ intermediate. Project supported by the key and major projects from the Chinese Academy of Sciences (Grant Nos. Kj951-A1-501-05 and Kj952-S1-03)     

Photocycle of 13-cis-retinal in bacteriorhodopsin caused by destruction to the cooperative effect of purple membrane

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Potential Proton‐Release Channels in Bacteriorhodopsin

The protein bacteriorhodopsin pumps protons across a bacterial membrane; its pumping cycle is triggered by the photoisomerization of a retinal cofactor and involves multiple proton‐transfer reactions between intermittent protonation sites. These transfers are either direct or mediated by hydrogen‐bonded networks, which may include internal water molecules. The terminal step of the proton‐transfer sequence is the proton release from a pocket near Glu194 and Glu204 to the extracellular bulk during the transition from the L to the M photointermediate states. The polar and charged side chains connecting these two regions in the crystal structures show no structural changes between the initial bR state and the L/M states, and no intermittent protonation changes have been detected so far in this region. Based on biomolecular simulations, we propose two potential proton‐release channels, which connect the release pocket to the extracellular medium. In simulations of the L photointermediate we observe bulk water entering these channels and forming transient hydrogen‐bonded networks, which could serve as fast deprotonation pathways from the release pocket to the bulk via a Grotthuss mechanism. For the first channel, we find that the triple Arg7, Glu9, and Tyr79 acts as a valve, thereby gating water uptake and release. The second channel has two release paths, which split at the position Asn76/Pro77 underneath the release group. Here, water molecules either exchange directly with the bulk or diffuse within the protein towards Arg 134/Lys129, where the exchange with the bulk occurs.     

基于菌紫质薄膜的相移器及其应用

设计了一种基于菌紫质光致各向异性的相移器,并把它用于相移干涉计量。取向随机分布的极性菌紫质分子对线偏振诱导光的选择性吸收导致分子取向分布不均匀,使其呈现宏观的各向异性,这种各向异性与诱导光的偏振特性密切相关,圆偏振光经过各向异性的菌紫质薄膜后,出射光的偏振特性完全由偏振诱导光决定。基于上述原理设计了一种新型的相移器,用琼斯矩阵法推导了基于相移器的相移干涉原理。该相移器在工作过程中不需要移动Mach-Zender干涉仪内部的任何器件,仅需要改变外部控制光路中诱导光的偏振取向就可以控制参考光的相位,有助于提高设备的抗振能力。用最小二乘法对相移干涉结果进行重建,得到了和实际相位一致的结果,验证了相移器的可行性。     

细菌紫红质中氢键相互作用和质子转移机理的分子模拟

用CHARMM程序以细菌紫红质1R84晶体为模型, 模拟了在等温定容条件下细菌紫红质在1 ps过程中的变化, 分析了与质子传递相关的ASP85, ASP212和水分子与视黄醛间氢键的结构变化情况. 考虑到氨基酸残基和席夫碱质子的不同距离, 考察了EC和PC两种结构的变化情况, 探讨了紫红质中质子传递的可能途径. 模拟结果表明1R84中可能的质子连续传递的机理是质子由席夫碱向水传递, 再由水向ASP85传递. 发现Asp212在模拟过程中保持EC结构, 这样可能更有利于顺序质子传递.     

菌紫质在银膜表面的共振增强Raman光谱

本文用表面共振增强Raman方法,研究了菌紫质在不同条件下吸附在镀银玻璃上的Raman光谱,结果表明菌紫质吸附在银膜上,代表菌紫质分子循环中间体M412特征谱带的1565cm-1Raman位移明显增强,说明银膜对M412态有一定表面共振增强作用。     

Two orientations and photochromism of polyelectrolyte/bacteriorhodopsin alternative deposition multilayers

A series of organized multilayers have been formed by the alternative adsorption of positively charged poly(dimethyldiallylammonium chloride) (PDAC) and purple membrane (PM) fragments in suspensions at pH = 4—11. Both UV-vis spectrophotometry and quartz crystal micro-balance (QCM) technique were used to monitor the deposition process of PDAC/bacteriorhodopsin (bR) multilayers, suggesting that PM fragments and PDAC are deposited alternatively on the substrate uniformly. Upon illumination, all these multilayers generate photovoltages with defined signs. The negative sign of photovoltage accompanying the formation of M-state at pH <7 indicates that the extracellular side of PM fragments is directed toward the substrate; and the positive sign at pH≥7 indicates that the cytoplasmic side of PM fragments is directed toward the substrate. In addition, the long-lived multiple M-state has been observed in all multilayer films. Moreover, M-state at high pH, which shows the longer lifetime than that at low pH, de     

The study of terbium regenerated bacterirhodopsin

Bacteriorhodopsin (bR) is the only retinal-contain- ing protein in the purple membrane of Halobacterium halobium[1]. Upon illumination, the protein undergoes a photocycle and pumps protons across the cell mem-brane[2,3]. It has been found that well-washed…     

Preparation of a cross-linked gelatin/bacteriorhodopsin film and its photochromic properties

Bacteriorhodopsin (BR) is a photochromic membrane protein isolated from a strain of halobacteria.Embedment of BR into a polymeric matrix enables the application of the photoactive protein as an optical material.In this work,a chemically crosslinked BR/gelatin film was prepared.The cross-linked film was found to be highly stable even under extreme alkaline or detergent circumstance while BR maintained its bioactivity.The treatments of base and detergents also led to dramatic prolongation of the lifetime of M...