Rapid determination of RMSDs corresponding to macromolecular rigid body motions

Finding the root mean sum of squared deviations (RMSDs) between two coordinate vectors that correspond to the rigid body motion of a macromolecule is an important problem in structural bioinformatics, computational chemistry, and molecular modeling. Standard algorithms compute the RMSD with time proportional to the number of atoms in the molecule. Here, we present RigidRMSD, a new algorithm that determines a set of RMSDs corresponding to a set of rigid body motions of a macromolecule in constant time with respect to the number of atoms in the molecule. Our algorithm is particularly useful for rigid body modeling applications, such as rigid body docking, and also for high‐throughput analysis of rigid body modeling and simulation results. We also introduce a constant‐time rotation RMSD as a similarity measure for rigid molecules. A C++ implementation of our algorithm is available at http://nano‐d.inrialpes.fr/software/RigidRMSD . © 2014 Wiley Periodicals, Inc.     

Synthesis and Conformation of 3,6‐Connected Cyclohexadiene Chains

3,6‐Connected cyclohexadienes as precursors for polyphenylenes are synthesized and characterized by mass spectrometry and NMR spectroscopy. Pure fractions of trimers, hexamers, and nonamers are collected after separation of the product mixture by recycling GPC. The anticipated formation of rigid linear structures, due to the trans‐configuration of the monomeric units, is supported by density functional theory and experimentally confirmed by dynamic light scattering from dilute solution at low scattering angles. The obtained translational diffusion coefficients are represented by rigid rod‐like or prolate ellipsoid‐like molecular shapes. The measurements of diffusion coefficients reveal a length‐dependent ratio of 1:2:3 between the three oligomers, which directly correlates to the expected length extension from trimer to nonamer.

     

A detailed insight into the optimization of plate and frame heat exchanger design by comparing old and new generation metaheuristics algorithms

The voluminous utilization and application of plate and frame heat exchangers (PFHE) in many industries has accelerated the consumer and designer both to optimize exchanger total cost. Over the last few years, several old and new generation algorithms were employed and exploited to optimize PFHE cost. This study explores the application and performance of three new-generation algorithms Big Bang-Big Crunch (BBBC), Grey Wolf Optimizer (GWO), and Water Evaporation Optimization (WEO) in designing optimally PFHE. Besides, this study also compares the performance of three well-established old generations algorithms namely genetic algorithm (genetics and natural selection), particle swarm optimization (animals behaviour), and differential evolution (population-based) with the above three new algorithms in the optimization of PFHE.Seven design factors are chosen for PFHE optimization: exchanger length on hot and cold sides, height and thickness of fin, length of the fin-strip, fin frequency, and the number of hot side layers. The applicability of the suggested algorithms is assessed using a case study based on published research. Though DE performs the best in this study of design optimization concerning total cost and computational time, the three new-generation meta-heuristic algorithms BBBC, GWO, and WEO also provide the novel scope of application in heat exchanger design optimization and successfully finding the cost of the heat exchanger. According to this study, capital costs increase by 19.5% for BBBC, 24% for GWO, and 7.6% for GWO, but operational costs fall by 9.5% for BBBC and GWO when compared to the best performing algorithm (DE). On the other hand, WEO shows an increase of 32.6% in operational costs. Aside from that, a full analysis of the computing time for each algorithm is also provided. The DE has the quickest run time of 0.09 ?s, while the PSO takes the longest at 33.97 ?s. The rest of the algorithms have nearly identical values. As a result, a good comparison is established in this study, offering an excellent platform for designers and customers to make selections. Additionally, the three new generations algorithms mentioned here were not used earlier for optimization of PFHE and the comparative study illustrates that each of them possesses eat potential for cost optimization and also solving other complex problems.     

Fire retarded polyurethane foam composites based on steel slag/ammonium polyphosphate system: A novel strategy for utilization of metallurgical solid waste

A series of FR-RPUF composites were prepared by a one-step water foaming process with ammonium polyphosphate (APP) and steel slag (SS) as flame retardants. Thermogravimetric analysis (TG), limiting oxygen index (LOI), UL-94 vertical combustion test, microscale combustion calorimetry (MCC), TG-Fourier transform infrared spectrometry (TG-FTIR), scanning electron microscopy (SEM), Raman spectra and FTIR were used to investigate the thermal stability, flame retardancy, combustion performance, gas phase products, and char residue morphology of FR-RPUF composites. TG test results showed that the initial decomposition temperature (T_-5wt%) and char residue rate at 700°C of RPUF/APP/SS composites were significantly enhanced by the addition of APP and SS, and the thermal stability of the composites was improved. Flame retardant test results confirmed the significantly increased LOI values of RPUF/APP/SS composites with V-0 rating. TG-FTIR also confirmed the obviously decreased release of toxic gases and flammable gases in the combustion of RPUF/APP/SS composites. SEM and Raman spectra of char residues for the composites suggested that APP/SS system improved the compactness and graphitization degree of char layer for RPUF/APP/SS composite. The above researches provide a new strategy for the utilization of SS in fire safety engineering.     

Hierarchical Porous Tubular Biochar Based Sensor for Detection of Trace Lead (II)

Hierarchical porous tubular biochar (PTBC) was prepared by selectively removing lignin simply according to reverse the pyrolysis sequence of cellulose. The properties of the PTBC sample were characterized by XRD, SEM, TEM, Raman spectra, cyclic voltammetry and electrochemical impedance spectroscopy. The electrochemical performances of PTBC modified on the screen-printing electrode illustrated excellent detection of lead ions (lead (II)) in water with the linear range (0.5–120 μg/L) and the detection limit (0.02 μg/L) by in-situ bismuth film square wave anode stripping voltammetry.     

超声场下刚性界面附近溃灭空化气泡的速度分析

为了揭示刚性界面附近气泡空化参数与微射流的相互关系, 从两气泡控制方程出发, 利用镜像原理, 建立了考虑刚性壁面作用的空化泡动力学模型. 数值对比了刚性界面与自由界面下气泡的运动特性, 并分析了气泡初始半径、气泡到固壁面的距离、声压幅值和超声频率对气泡溃灭的影响. 在此基础上, 建立了气泡溃灭速度和微射流的相互关系. 结果表明: 刚性界面对气泡振动主要起到抑制作用; 气泡溃灭的剧烈程度随气泡初始半径和超声频率的增加而降低, 随着气泡到固壁面距离的增加而增加; 声压幅值存在最优值, 固壁面附近的气泡在该最优值下气泡溃灭最为剧烈; 通过研究气泡溃灭速度和微射流的关系发现, 调节气泡溃灭速度可以达到间接控制微射流的目的.     

自适应环境的机器人视觉伺服控制方法

机器人和机器视觉的迅速发展,使得基于视觉的智能机器人得到更加广泛的应用。机器视觉提高了机器人控制系统对环境的适应程度,但其适应程度也受到周围环境对机器视觉算法的影响。针对这一情况,本文对机器人视觉伺服控制系统中的机器视觉算法进行了改进,提出了一种基于帧间差分法的自适应环境的机器人视觉伺服控制方法,从而提高了控制系统对环境的自适应程度,提高了对机器人控制的精确度,实验和理论分析证明,该方法具有较大的应用前景和实用价值。     

Efficient cross polarization with simultaneous adiabatic frequency sweep on the source and target channels

In this work, we propose a new and efficient heteronuclear cross polarization scheme, in which adiabatic frequency sweeps from far off-resonance toward on-resonance are applied simultaneously on both the source and target spins. This technique, which we call as Simultaneous ADIabatic Spin-locking Cross Polarization (SADIS CP), is capable of efficiently locking both the source and target spins with moderate power even in the presence of large spectral distribution and fast relaxation. It is shown that by keeping the time-dependent Hartmann-Hahn mismatch minimal throughout the mixing period, polarization transfer can be accelerated. Experiments are demonstrated in a powder sample of L-alanine.     

一种改进的三帧差分运动目标实时检测算法

针对传统的三帧差分法提取的运动目标存在大量的噪声和空洞,提出了一种改进的三帧差分运动目标实时检测算法。该算法采用Surendra背景提取算法提取有效背景,对视频流中连续的三帧图像分别进行背景减除,得到的结果作为反馈对背景进行选择性更新,利用HSV颜色空间去除阴影后进行三帧差分,将差分结果进行“与”运行,通过将中间帧背景减除结果与“与”运算的结果进行“或”运算,这样可以得到运动目标的完整信息。实验结果表明,该算法能够快速、完整、准确地检测出运动目标,可有效应用于实时监控系统。     

Aluminum hypophosphite in combination with expandable graphite as a novel flame retardant system for rigid polyurethane foams

The main aim of this work was to investigate the synergistic effect of expandable graphite (EG) and aluminum hypophosphite (AHP) on the flame retardancy of rigid polyurethane foams (RPUFs). A series of flame retardant RPUF containing EG and AHP were prepared by one‐shot and free‐rise method. The flame retardant, thermal degradation, and combustion properties of RPUF hybrids were characterized through limiting oxygen index (LOI) test, vertical burning (UL‐94) test, thermogravimetric analysis and microscale combustion calorimeter. The LOI and UL‐94 results showed that the RPUF sample with 10 wt% EG and 5 wt% AHP passed UL‐94 V‐0 rating and reached a relatively high LOI value of 28.5%, which is superior over other EG/AHP ratios in RPUF at the equivalent filler loading. Microscale combustion calorimeter results revealed that the incorporation of EG and AHP into RPUF reduced the peak heat release rate and total heat release, thus decrease the fire risk of RPUF significantly. Incorporation of EG and AHP improved the thermal stability of RPUF as observed from the thermogravimetric analysis results and also enhanced the thermal resistance of char layer at high temperature from scanning electron microscopy and Raman spectroscopy. Moreover, it could be seen from thermogravimetric analysis/infrared spectrometry spectra that the addition of EG and AHP significantly decreased the combustible gaseous products such as hydrocarbons and ethers. Finally, the synergistic mechanism in flame retardancy was discussed and speculated. Copyright © 2014 John Wiley & Sons, Ltd.