Probing the Role of the Conserved Arg174 in Formate Dehydrogenase by Chemical Modification and Site-Directed Mutagenesis

The reactive adenosine derivative, adenosine 5′-O-[S-(4-hydroxy-2,3-dioxobutyl)]-thiophosphate (AMPS-HDB), contains a dicarbonyl group linked to the purine nucleotide at a position equivalent to the pyrophosphate region of NAD⁺. AMPS-HDB was used as a chemical label towards Candida boidinii formate dehydrogenase (CbFDH). AMPS-HDB reacts covalently with CbFDH, leading to complete inactivation of the enzyme activity. The inactivation kinetics of CbFDH fit the Kitz and Wilson model for time-dependent, irreversible inhibition (K_D = 0.66 ± 0.15 mM, first order maximum rate constant k₃ = 0.198 ± 0.06 min⁻¹). NAD⁺ and NADH protects CbFDH from inactivation by AMPS-HDB, showing the specificity of the reaction. Molecular modelling studies revealed Arg174 as a candidate residue able to be modified by the dicarbonyl group of AMPS-HDB. Arg174 is a strictly conserved residue among FDHs and is located at the Rossmann fold, the common mononucleotide-binding motif of dehydrogenases. Arg174 was replaced by Asn, using site-directed mutagenesis. The mutant enzyme CbFDHArg174Asn was showed to be resistant to inactivation by AMPS-HDB, confirming that the guanidinium group of Arg174 is the target for AMPS-HDB. The CbFDHArg174Asn mutant enzyme exhibited substantial reduced affinity for NAD⁺ and lower thermostability. The results of the study underline the pivotal and multifunctional role of Arg174 in catalysis, coenzyme binding and structural stability of CbFDH.     

HZSM-5分子筛中邻近酸中心上的协同催化作用

总结了HZSM-5分子筛中邻近的酸中心协同催化作用的研究进展, 包括布朗斯特酸(B酸)和路易斯酸 (L酸)的协同催化、 B酸和B酸的协同催化作用. 综述了通过多种表征手段下协同催化作用机理的研究进展, 以及实验与理论计算相结合并相互验证的研究结果, 对邻近酸中心协同作用下反应分子的共同吸附、 活化与转化路径的特点进行了分析与总结, 提出了对邻近酸中心协同催化作用进行深入研究的关键科学问题和可能的解决方案.     

Inhibition of two Cu(II) and Mn(II) coordination polymers on the surgical site infections by inhibiting the bacterial biofilm formation

Within this work, two novel Cu(II) and Mn(II)-based coordination polymers (CPs) along with chemical compositions of {[Cu₂(L¹)(1,4-NDC)₂]·3H₂O}_n (1, 1,4-H₂NDC = Naphthalene-1,4-dicarboxylic acid, L¹ ​= ​di(1H-imidazole-1-yl)methane) and [Mn₃(L²)₂(H₂O)₂(1,4-NDC)₂]_n (2, L² ​= ​1,4-di(1H-imidazole-1-yl)benzene) have been completed in success via related metal salts reaction with 1,4-H₂NDC ligand in existence of various N-donor co-ligands. We discovered its application values on the surgical site infections (SSI) along with corresponding mechanism in the interim. We evaluated inflammatory cytokines released into the urine through ELISA detection kit after compound treatment. Then, we discovered the inhibitory effect of compound on the bacterial biofilm formation via real time RT-PCR.     

H-ZSM-5分子筛不同孔道处的酸位在甲醇制烯烃反应中的催化作用

甲醇制烯烃(MTO)作为一条由煤、天然气和生物质等含碳资源制备重要有机化学品的非石油路线,近年来备受关注.作为MTO催化剂,分子筛的骨架拓扑结构和酸性质对于其催化活性、反应路径和产物分布等具有重要的影响.H-ZSM-5分子筛是一种典型的MTO反应催化剂,酸位可以分布在MFI拓扑结构的直孔道、正弦孔道和交叉位点处.虽然目前已普遍认可MTO反应遵循芳烃/烯烃双循环烃池机理,分子筛的催化性能与其骨架中酸中心的位置相关,但对于H-ZSM-5分子筛不同孔道位置处的酸中心在甲醇制烯烃反应中的催化作用仍缺乏足够认识.本文采用密度泛函理论计算和分子动力学模拟方法,对H-ZSM-5分子筛不同孔道处(包括正弦孔道、直孔道和交叉腔)酸位中心上的MTO反应网络(包括芳烃循环、烯烃循环和芳构化)及甲醇原料和烯烃/芳烃产物的扩散行为进行了比较研究.结果表明,与正弦孔道和直孔道相比,芳烃循环和芳构化反应在交叉腔的酸中心上因具有较低的能垒而更易进行.相比之下,在正弦孔道和直孔道中,多甲基苯的生成受到显著限制,而烯烃循环却可以在三种酸中心(正弦孔道、直孔道和交叉腔)上以相近的能垒和相似的几率进行.芳烃循环生成乙烯和丙烯的几率相近,而烯烃循坏产物以丙烯和较高的烯烃产物为主.落位于H-ZSM-5交叉腔的酸中心能促进芳烃中间体如多甲基苯的生成,推动芳烃循环,提高乙烯选择性,而正弦孔道和直孔道中的酸中心则能增强烯烃循环,生成较多的丙烯和较高的烯烃产物.因此,H-ZSM-5分子筛对MTO的催化性能(包括活性和产物选择性等),可以通过有目的地调节酸中心在分子筛骨架中的位置分布(即铝落位)而得到有效调变和提升.本文阐明了H-ZSM-5分子筛酸中心在MTO反应中的催化作用与其骨架中的落位之间的有机联系,为高效甲醇转化分子筛催化剂的设计和性能提升提供了参考思路.     

FER分子筛中铝原子的受限落位

分子筛是一类具有规则孔道或笼状结构的多孔材料,因其独特的结构和可调的酸性而广泛用于石油化工、精细化学品合成、现代煤化工等诸多行业.2006年Iglesia等在具有8元环孔道结构/侧口袋的FER和MOR分子筛上实现了无卤素添加、无贵金属存在条件下,由二甲醚羰基化合成乙酸甲酯的反应.乙酸甲酯通过进一步加氢可实现煤基乙醇的绿色生产.MOR分子筛通常具有较高的催化活性,但失活迅速;FER分子筛表现出良好的催化稳定性,但活性较低.如何在保证FER分子筛稳定性的前提下,进一步提升其羰基化活性是目前研究的热点.前期理论和实验研究发现,二甲醚羰基化反应活性与分子筛8元环孔道中的Br?nsted酸位密度存在正相关.因此,通过优化合成条件,选择性调控铝原子分布在"ferrierite"笼中,可以提高FER分子筛的羰基化反应活性.尽管研究者已在调节FER分子筛铝分布方面进行了大量研究,但对于不同T位上Al原子的精准识别以及对应Br?nsted酸位的可接触性还缺少系统和深入的认识.本文选取了几种代表性模板剂,分别在碱性和含氟体系下制备了系列FER分子筛样品,利用Rietveld精修和模拟退火算法,在原子水平揭示了模板剂种类以及合成介质变化对Al原子在不同T位分布的影响,并结合二甲醚羰基化反应进行了结构和性能的关联.首先选取不同尺寸大小的环状胺(环己胺、哌啶、吡啶、吡咯烷)和链状胺(乙二胺)合成了具有相似形貌、孔结构、酸密度的系列FER分子筛样品.以CHA-Na-FER为例,PXRD精修结果显示,Na+(平衡35％的骨架负电荷)分布在10元环孔道中与O1形成氢键,质子化的环己胺分布在"ferrierite"笼中,并且环己胺上的N与O3形成氢键.这说明与O1相连的T3位以及与O3相连的T1位都有可能是Al富集的位置.为了进一步验证该结论,本文还精修了吸附探针分子吡啶的样品CHA-Na-FER-Py-60h.原粉以及吸附吡啶样品的精修结果表明,T1位和T3位是样品中铝富集的位置.随后,运用相同方法研究了Py-Na-FER,PI-Na-FER,En-Na-FER和Pyrr-HF-FER样品中的Al落位,发现T1/T3位均是样品中Al富集的位置.此外,理论计算结果表明T1/T3位上Al原子的取代能较低,说明Al优先取代T1/T3位上的Si,这与精修结果相一致.前期理论模拟结果表明,FER分子筛中T2-O5和T4-O7位点的CO插入反应能垒较低,是二甲醚羰基化反应的活性位.本文吡啶吸附实验、热重分析以及PXRD精修结果表明,FER分子筛中大部分Al富集在T1/T3位,与T2/T4位相关的Br?nsted酸约占18％～30％.最后,对各样品进行了二甲醚羰基化反应评价,结果显示PI-Na-FER,Py-Na-FER,En-Na-FER和CHA-Na-FER催化剂的乙酸甲酯生成速率相近,约为0.10 mol/(mol H+?h).Pyrr-HF-FER催化剂的乙酸甲酯生成速率最高,可达到0.16 mol/(mol H+?h),这可能是由于Pyrr-HF-FER催化剂具有更多T2/T4位相关的Br?nsted酸.虽然Pyrr-HF-FER催化剂的乙酸甲酯生成速率较其他四个催化剂有一定提升,但其仍远低于MOR分子筛上乙酸甲酯生成速率(0.40 mol/(mol H+·h)).综上,有机模板剂的选择与合成介质的改变对FER分子筛中Al分布的调控作用是有限的,即Al原子总是优先分布于T1/T3位.而与T1和T3位相关的Br?nsted酸位不是二甲醚羰基化反应的活性位点.因此与MOR相比,FER分子筛在二甲醚羰基化反应中表现出较低的催化活性.     

MoO3和Nb2O5助剂对Pt/ZrO2催化剂上短链烷烃燃烧反应的不同促进作用

贵金属Pt催化剂具有高活性和热稳定性,广泛应用于催化挥发性有机物的完全氧化反应(燃烧反应).短链烷烃(甲烷、乙烷、丙烷等)化学性质稳定,是最难氧化的一类有机物,常用作考察燃烧反应催化剂性能的模型反应物.然而,目前报道的研究工作通常仅限于针对某一种烷烃底物的催化燃烧,系统考察催化剂以及助剂对不同短链烷烃的催化燃烧活性鲜有报道.在短链烷烃中,甲烷只有C–H键;而其它烷烃除了C–H键;还有C–C键.因此,研究催化剂对甲烷、乙烷和丙烷燃烧反应催化性能的差异性,对于认识催化剂上C–H键和C–C键的活化具有非常重要的意义.本文制备了MoO3或Nb2O5修饰的Pt/ZrO2催化剂并用于短链烷烃的燃烧反应.研究发现,MoO3助剂对甲烷燃烧有明显的抑制作用,但对乙烷,丙烷和正己烷燃烧反应具有促进作用,促进作用随着烷烃碳链的增长逐渐增加;Nb2O5助剂对甲烷、乙烷、丙烷和正己烷燃烧反应均具有促进作用,然而促进作用随着碳链的增长而逐渐减弱.MoO3和Nb2O5助剂的不同促进作用与助剂影响催化剂表面酸性以及Pt物种的氧化或还原态有关.NH3-TPD结果表明,MoO3助剂可以显著增加Pt/ZrO2催化剂表面强酸位点数量,而Nb2O5助剂可以显著增加Pt/ZrO2催化剂表面中强酸位点数量.HTEM结果表明,两种助剂的添加都不会明显改变Pt物种的颗粒尺寸.在Pt-Mo/ZrO2催化剂上,MoO3覆盖部分Pt物种形成丰富的Pt-MoO3界面,促进了金属Pt物种和强表面酸性位点的生成,提高了丙烷燃烧反应活性;Pt-Nb/ZrO2催化剂上载体表面的部分Nb2O5被Pt物种包覆,使得生成的表面Pt-Nb2O5界面低于Pt-Mo/ZrO2催化剂,但由于催化剂表面酸性位的提升,也促进了丙烷燃烧反应活性的提高.XPS结果表明,在甲烷燃烧反应中,Pt-Nb/ZrO2催化剂上Ptn+物种能够更加稳定地存在,这可能是Nb2O5助剂提高Pt-Nb/ZrO2催化剂上甲烷燃烧活性的关键.而Pt-Mo/ZrO2催化剂上Ptn+物种在甲烷反应中可以更容易地被还原,并且由于MoO3的包裹导致暴露的Pt位点数量降低,使催化剂催化甲烷燃烧的活性受到抑制.可见,MoO3助剂更有利于C–C键活化,而Nb2O5助剂更有利于高键能的C–H键活化.综上,本文系统性地研究MoO3助剂和Nb2O5助剂对Pt/ZrO2催化剂上不同短链烷烃的燃烧反应的影响,证实了两种助剂的促进作用与碳链长度的关系是截然不同的.     

Detection of oxygen addition peaks for terpendole E and related indole–diterpene alkaloids in a positive‐mode ESI‐MS

This report describes that a regular positive electrospray ionization mass spectrometry (MS) analysis of terpendoles often causes unexpected oxygen additions to form [M + H + O]⁺ and [M + H + 2O]⁺, which might be a troublesome in the characterization of new natural analogues. The intensities of [M + H + O]⁺ and [M + H + 2O]⁺ among terpendoles were unpredictable and fluctuated largely. Simple electrochemical oxidation in electrospray ionization was insufficient to explain the phenomenon. So we studied factors to form [M + H + O]⁺ and [M + H + 2O]⁺ using terpendole E and natural terpendoles together with some model indole alkaloids. Similar oxygen addition was observed for 1,2,3,4‐tetrahydrocyclopent[b]indole, which is corresponding to the substructure of terpendole E. In tandem MS experiments, a major fragment ion at m/z 130 from protonated terpendole E was assigned to the substructure containing indole. When the [M + H + O]⁺ was selected as a precursor ion, the ion shifted to m/z 146. The same 16 Da shift of fragments was also observed for 1,2,3,4‐tetrahydrocyclopent[b]indole, indicating that the oxygen addition of terpendole E took place at the indole portion. However, the oxygen addition was absent for some terpendoles, even whose structure resembles terpendole E. The breakdown curves characterized the tandem MS features of terpendoles. Preferential dissociation into m/z 130 suggested the protonation tendency at the indole site. Terpendoles that are preferentially protonated at indole tend to form oxygen addition peaks, suggesting that the protonation feature contributes to the oxygen additions in some degrees. © 2014 The Authors. Journal of Mass Spectrometry published by John Wiley & Sons, Ltd.     

Nickel‐Catalyzed Site‐Selective Amidation of Unactivated C(sp3)H Bonds

Intramolecular dehydrogenative cyclization of aliphatic amides was achieved on unactivated sp³ carbon atoms by a nickel‐catalyzed C?H bond functionalization process with the assistance of a bidentate directing group. The reaction favors the C?H bonds of β‐methyl groups over the γ‐methyl or β‐methylene groups. Additionally, a predominant preference for the β‐methyl C?H bonds over the aromatic sp² C?H bonds was observed. Moreover, this process also allows for the effective functionalization of benzylic secondary sp³ C?H bonds.     

牛血清白蛋白与十二烷基硫酸钠作用的机理

利用电动势法得到了牛血清白蛋白(BSA)与十二烷基硫酸钠(SDS)相互作用的结合等温线. 通过四阶导数紫外光谱法和荧光光谱法研究了相互作用过程中芳香族氨基酸残基微环境极性的变化. 通过研究发现, 随着SDS浓度的逐渐增大, SDS在BSA上的平均结合数(v)逐渐增大, 色氨酸(Trp)残基所处微环境的极性在减弱后保持基本不变, 酪氨酸残基所处微环境的极性在明显增强后稍有减弱, 苯丙氨酸残基所处微环境的极性略有增强. 结果表明, 当v由0增大到14时, SDS主要结合在BSA的Trp-213附近并逐渐形成聚集体, 从而诱导BSA由结构域ⅡA 开始逐渐展开. 此后, SDS呈正协同作用的特点与BSA 结合, v急剧增大. 当v约为302 时, SDS在BSA上的结合基本达到饱和, BSA的构象趋于稳定.     

Facile CH Bond Formation by Reductive Elimination at a Dinuclear Metal Site

The electronically unsaturated dirhenium complex [Re₂(CO)₈(µ‐AuPPh₃)(µ‐Ph)] ( 1 ) was obtained from the reaction of [Re₂(CO)₈{µ‐η²‐C(H)?C(H)nBu}(µ‐H)] with [Au(PPh₃)Ph]. The bridging {AuPPh₃} group was replaced by a bridging hydrido ligand to yield the unsaturated dirhenium complex [Re₂(CO)₈(µ‐H)(µ‐Ph)] ( 2 ) by reaction of 1 with HSnPh₃. Compound 2 reductively eliminates benzene upon addition of NCMe at 25 °C. The electronic structure of 2 and the mechanism of the reductive elimination of the benzene molecule in its reaction with NCMe were investigated by DFT computational analyses.