pH-Sensitive Oscillatory Motion of a Urease Motor on the Urea Aqueous Phase

A self-propelled object coupled with an enzyme reaction between urease and urea was investigated at the air/aqueous interface. A plastic object that was fixed to a urease-immobilized filter paper was used as a self-propelled object, termed a urease motor, placed on an aqueous urea solution. The driving force of the urease motor is the difference in the surface tension around the object. Oscillatory motion or no motion was triggered depending on the initial pH of the urea solution. Both the frequency and maximum speed of the oscillatory motion varied depending on the initial pH of the water phase. The mechanisms underlying the oscillatory motion and no motion were discussed in relation to the bell-shaped enzyme activity of urease in the enzyme reaction and the surface tension around the urease motor.     

Topologically-Interlocked Minicircles as Probes of DNA Topology and DNA-Protein Interactions

DNA minicircles exist in biological contexts, such as kinetoplast DNA, and are promising components for creating functional nanodevices. They have been used to mimic the topological features of nucleosomal DNA and to probe DNA-protein interactions such as HIV-1 and PFV integrases, and DNA gyrase. Here, we synthesized the topologically-interlocked minicircle rotaxane and catenane inside a frame-shaped DNA origami. These minicircles are 183 bp in length, constitute six individual single-stranded DNAs that are ligated to realize duplex interlocking, and adopt temporary base pairing of single strands for interlocking. To probe the DNA-protein interactions, restriction reactions were carried out on DNAs with different topologies such as free linear duplex or duplex constrained inside origami and free or topologically-interlocked minicircles. Except the free linear duplex, all tested structures were resistant to restriction digestion, indicating that the topological features of DNA, such as flexibility, curvature, and groove orientation, play a major role in DNA-protein interactions.     

FER分子筛中铝原子的受限落位

分子筛是一类具有规则孔道或笼状结构的多孔材料,因其独特的结构和可调的酸性而广泛用于石油化工、精细化学品合成、现代煤化工等诸多行业.2006年Iglesia等在具有8元环孔道结构/侧口袋的FER和MOR分子筛上实现了无卤素添加、无贵金属存在条件下,由二甲醚羰基化合成乙酸甲酯的反应.乙酸甲酯通过进一步加氢可实现煤基乙醇的绿色生产.MOR分子筛通常具有较高的催化活性,但失活迅速;FER分子筛表现出良好的催化稳定性,但活性较低.如何在保证FER分子筛稳定性的前提下,进一步提升其羰基化活性是目前研究的热点.前期理论和实验研究发现,二甲醚羰基化反应活性与分子筛8元环孔道中的Br?nsted酸位密度存在正相关.因此,通过优化合成条件,选择性调控铝原子分布在"ferrierite"笼中,可以提高FER分子筛的羰基化反应活性.尽管研究者已在调节FER分子筛铝分布方面进行了大量研究,但对于不同T位上Al原子的精准识别以及对应Br?nsted酸位的可接触性还缺少系统和深入的认识.本文选取了几种代表性模板剂,分别在碱性和含氟体系下制备了系列FER分子筛样品,利用Rietveld精修和模拟退火算法,在原子水平揭示了模板剂种类以及合成介质变化对Al原子在不同T位分布的影响,并结合二甲醚羰基化反应进行了结构和性能的关联.首先选取不同尺寸大小的环状胺(环己胺、哌啶、吡啶、吡咯烷)和链状胺(乙二胺)合成了具有相似形貌、孔结构、酸密度的系列FER分子筛样品.以CHA-Na-FER为例,PXRD精修结果显示,Na+(平衡35％的骨架负电荷)分布在10元环孔道中与O1形成氢键,质子化的环己胺分布在"ferrierite"笼中,并且环己胺上的N与O3形成氢键.这说明与O1相连的T3位以及与O3相连的T1位都有可能是Al富集的位置.为了进一步验证该结论,本文还精修了吸附探针分子吡啶的样品CHA-Na-FER-Py-60h.原粉以及吸附吡啶样品的精修结果表明,T1位和T3位是样品中铝富集的位置.随后,运用相同方法研究了Py-Na-FER,PI-Na-FER,En-Na-FER和Pyrr-HF-FER样品中的Al落位,发现T1/T3位均是样品中Al富集的位置.此外,理论计算结果表明T1/T3位上Al原子的取代能较低,说明Al优先取代T1/T3位上的Si,这与精修结果相一致.前期理论模拟结果表明,FER分子筛中T2-O5和T4-O7位点的CO插入反应能垒较低,是二甲醚羰基化反应的活性位.本文吡啶吸附实验、热重分析以及PXRD精修结果表明,FER分子筛中大部分Al富集在T1/T3位,与T2/T4位相关的Br?nsted酸约占18％～30％.最后,对各样品进行了二甲醚羰基化反应评价,结果显示PI-Na-FER,Py-Na-FER,En-Na-FER和CHA-Na-FER催化剂的乙酸甲酯生成速率相近,约为0.10 mol/(mol H+?h).Pyrr-HF-FER催化剂的乙酸甲酯生成速率最高,可达到0.16 mol/(mol H+?h),这可能是由于Pyrr-HF-FER催化剂具有更多T2/T4位相关的Br?nsted酸.虽然Pyrr-HF-FER催化剂的乙酸甲酯生成速率较其他四个催化剂有一定提升,但其仍远低于MOR分子筛上乙酸甲酯生成速率(0.40 mol/(mol H+·h)).综上,有机模板剂的选择与合成介质的改变对FER分子筛中Al分布的调控作用是有限的,即Al原子总是优先分布于T1/T3位.而与T1和T3位相关的Br?nsted酸位不是二甲醚羰基化反应的活性位点.因此与MOR相比,FER分子筛在二甲醚羰基化反应中表现出较低的催化活性.     

Highly Isospecific Polymerization of Silyl‐Protected ω‐Alkenols Using an [OSSO]‐Type Bis(phenolato) Dichloro Zirconium(IV) Precatalyst

The coordination polymerization of silyl‐protected ω‐alkenols such as ω‐alken‐α‐oxytriisopropylsilanes 1 provides poly(ω‐alkenyl‐α‐oxytriisopropylsilalne)s with a highly isospecific microstructure ([mmmm] > 95%) when a combination of [OSSO]‐type bis(phenolato) dichloro zirconium(IV) complex 2 and dried methylaluminoxane is used as the precatalyst and activator, respectively. The resulting siloxy‐substituted polymers could be efficiently transformed into the corresponding functionalized polyolefins, which contained up to 90% acetyl groups and ≈7% hydroxy groups in the terminal side chains.

     

Identification of conjugation positions of urinary glucuronidated vitamin D3 metabolites by LC/ESI–MS/MS after conversion to MS/MS‐fragmentable derivatives

A liquid chromatography/electrospray ionization–tandem mass spectrometry‐based method was developed for the identification of the conjugation positions of the monoglucuronides of 25‐hydroxyvitamin D₃ [25(OH)D₃] and 24,25‐dihydroxyvitamin D₃ [24,25(OH)₂D₃] in human urine. The method employed derivatization with 4‐(4‐dimethylaminophenyl)‐1,2,4‐triazoline‐3,5‐dione to convert the glucuronides into fragmentable derivatives, which provided useful product ions for identifying the conjugation positions during the MS/MS. The derivatization also enhanced the assay sensitivity and specificity for urine sample analysis. The positional isomeric monoglucuronides, 25(OH)D₃‐3‐ and ‐25‐glucuronides, or 24,25(OH)₂D₃‐3‐, ‐24‐ and ‐25‐glucuronides, were completely separated from each other under the optimized LC conditions. Using this method, the conjugation positions were successfully determined to be the C3 and C24 positions for the glucuronidated 25(OH)D₃ and 24,25(OH)₂D₃, respectively. The 3‐glucuronide was not present for 24,25(OH)₂D₃, unlike 25(OH)D₃, thus we found that selective glucuronidation occurs at the C24‐hydroxy group for 24,25(OH)₂D₃.     

Tuning the Reactivity of a Substrate for SNAP-Tag Expands Its Application for Recognition-Driven DNA-Protein Conjugation

Recognition-driven modification has been emerging as a novel approach to modifying biomolecular targets of interest site-specifically and efficiently. To this end, protein modular adaptors (MAs) are the ideal reaction model for recognition-driven modification of DNA as they consist of both a sequence-specific DNA-binding domain (DBD) and a self-ligating protein-tag. Coupling DNA recognition by DBD and the chemoselective reaction of the protein tag could provide a highly efficient sequence-specific reaction. However, combining an MA consisting of a reactive protein-tag and its substrate, for example, SNAP-tag and benzyl guanine (BG), revealed rather nonselective reaction with DNA. Therefore new substrates of SNAP-tag have been designed to realize sequence-selective rapid crosslinking reactions of MAs with SNAP-tag. The reactions of substrates with SNAP-tag were verified by kinetic analyses to enable the sequence-selective crosslinking reaction of MA. The new substrate enables the distinctive orthogonality of SNAP-tag against CLIP-tag to achieve orthogonal DNA-protein crosslinking by six unique MAs.     

Flexible active matrix addressed displays manufactured by printing and coating techniques

A flexible electrochromic active matrix addressed display, including 8 × 8 pixels, is demonstrated by using solution processing based on standard printing and coating manufacturing techniques. Each organic electrochromic display (OECD) pixel and its corresponding organic electrochemical transistor (OECT) are located on different sides of the flexible PET substrate. Electronic vias generated through the plastic substrate connects each OECD pixel with one addressing OECT. When comparing this display with actively addressed OECDs with all its components located on the same side, the present approach based on this electronic via substrate provides an enhanced pixel resolution and a relatively more simplified manufacturing process. © 2012 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys, 2012