In situ synthesis of oligonucleotide arrays by using surface tension

This work describes the in situ synthesis of oligonucleotide arrays on glass surfaces. These arrays are composed of features defined and separated by differential surface tension (surface tension arrays). Specifically, photolithographic methods were used to create a series of spatially addressable, circular features containing an amino-terminated organosilane coupled to the glass through a siloxane linkage. Each feature is bounded by a perfluorosilanated surface. The differences in surface energies between the features and surrounding zones allow for chemical reactions to be readily localized within a defined site. The aminosilanation process was analyzed using contact angle, X-ray photoelectron spectroscopy (XPS), and time-of-flight/secondary ion mass spectroscopy (TOF-SIMS). The efficiency of phosphoramidite-based oligonucleotide synthesis on these surface tension arrays was measured by two methods. One method, termed step-yields-by-hybridization, indicates an average synthesis efficiency for all four (A,G,C,T) bases of 99.9 +/- 1.1%. Step yields measured for the individual amidite bases showed efficiencies of 98.8% (dT), 98.0% (dA), 97.0% (dC), and 97.6% (dG). The second method for determining the amidite coupling efficiencies was by capillary electrophoresis (CE) analysis. Homopolymers of dT (40- and 60mer), dA (40mer), and dC (40mer) were synthesized on an NH(4)OH labile linkage. After cleavage, the products were analyzed by CE. Synthesis efficiencies were calculated by comparison of the full-length product peak with the failure peaks. The calculated coupling efficiencies were 98.8% (dT), 96.8% (dA), and 96.7% (dC).     

TDDFT Studies of Electronic Structure and First Hyperpolarizability of Tetra-nuclear Cubane-like Transition Metal Clusters

A series of tri-nuclear transition metal clusters with incomplete cubane-like configurations have been studied by TDDFT method. The calculations show that they have enormously large second-order polarizabilities () and are potential nonlinear optical materials for infrared double frequency conversion1. In this paper some tetra-nuclear transition metal clusters with cubane-like configurations, MCu3X4 (PPh3)3 (M=W, Mo; X= S, O, Cl, Se, Br), were studied by TDDFT method for a reference…     

双圈图的零度与其匹配数之间的关系

Let G be a graph with n(G) vertices and m(G) be its matching number.The nullity of G,denoted by η(G),is the multiplicity of the eigenvalue zero of adjacency matrix of G.It is well known that if G is a tree,then η(G) = n(G)-2m(G).Guo et al.[Jiming GUO,Weigen YAN,Yeongnan YEH.On the nullity and the matching number of unicyclic graphs.Linear Alg.Appl.,2009,431:1293 1301]proved that if G is a unicyclic graph,then η(G)equals n(G)-2m(G)-1,n(G)-2m(G),or n(G)-2m(G) +2.In this paper,we prove that if G is a bicyclic graph,then η(G) equals n(G)-2m(G),n(G)-2m(G)±1,n(G)-2m(G)±2or n(G)-2m(G) + 4.We also give a characterization of these six types of bicyclic graphs corresponding to each nullity.     

A phenomenological theory for polarization flop in spiral multiferroic TbMnO<Subscript>3</Subscript>

A phenomenological Landau theory has been used to explain magnetic field-driven polarization flop in TbMnO ₃. The Néel wall-like magnetic structure in spiral multiferroics induces a space-dependent internal magnetic field which exerts a torque on spins to rotate bc-spiral to ab-spiral. The external magnetic field is argued to be competing with easy axis anisotropy and the system stabilizes when anisotropy is minimum. With the help of Landau free energy with DM magnetoelectric coupling and a general ansatz for magnetization, the phenomenon of polarization flop has been explained. Relation between T_flop and critical magnetic field has been established and found to be in good agreement with the experiment. This could be an indication that anisotropy of the system is temperature- and magnetic field-dependent.     

相对论重离子碰撞的温度涨落与热容

使用LUCIAE3.0模型模拟了SPS能区Pb+Pb和C+C在不同能量(E_lab=20—200A GeV)和不同中心度下的重离子碰撞.并通过逐个事件的粒子温度涨落提取出了相应粒子的热容,发现对于同一碰撞系统,单位发射粒子的热容随碰撞能量的升高而下降直至饱和,随着碰撞参数b的增大而减小,而且发现单位发射粒子的热容具有随粒子质量的变大而变大的关系.同时还发现不同碰撞系统中同一种粒子具有相同的单位发射粒子热容,并给出了相应的解释.     

158A GeV的相对论重离子碰撞的强子快度分布及温度拟合

针对最近NA49在158A GeV的实验(C+C,Si+Si,Pb+Pb)数据,应用LUCIAE3.0模型进行模拟,得到了强子的快度分布和横向动量分布,并与实验数据进行比较,发现基本与实验数据相吻合。并对横向动量分布进行温度拟合,给出了和实验数据吻合很好的结果,但是对于重系统或重强子LUCIAE3.0给出的结果与实验符合相对较差.     

高能重离子碰撞中正负荷电粒子比单事例起伏研究

用强子和弦级联模型,JPCIAE及相应的Monte Carlo事例产生器,研究相对论性核–核碰撞中有限快度区间内正负荷电粒子比单事例起伏与能量、中心度、共振态衰变及快度间隔的关系.JPCIAE模型能够较好地符合CERN/SPS能区Pb+Pb碰撞的实验结果.本文还用此模型预言了RHIC能区Au+Au碰撞和ALICE能区Pb+Pb碰撞中的正负荷电粒子比单事例起伏.可以看出碰撞能量、中心度、共振态衰变及快度间隔对正负荷电粒子比单事例起伏的影响都不大.     

Theoretical Study of Hydrated Cd~（2＋） Interactions with Guanine

Theoretical study was performed to investigate how the hydration of cadmium ca-tion influences the structure and properties of guanine.The aqueous environment was simulated by both explicit solvent(1-5 water molecules) model and implicit solvent model.For complexes in which Cd2+ attached to the N(7) and O(6) sites of guanine,energy analysis together with the Natural Bonding Orbital(NBO) analysis were performed to elucidate the bonding characteristics in detail.The most stable structures are penta-coordinate complexes without aqua ligand located at the guanine site.Higher number of water ligands corresponds to higher stabilization energies.Average bonding energies of G-Cd increase with the number of water molecules.Bonding energies of water ligands depend on its position in the complexes.The charge distribution of guanine changed with increasing the number of water ligands,which may also influence the base-pairing pattern of guanine.There is positive charge transfer from guanine to aqua ligand as the number of the hydration waters increases.IEFPCM optimization has results comparable to the [CdG(H2O)5]2+ structure 5a.     

Preparation and Storage of Silver Nanoparticles in Aqueons Polymers

以水溶性聚合物为保护剂,采用化学还原法制备了银纳米粒子,分别利用透射电子显微镜、紫外可见光谱、同步光散射光谱等手段对其进行了表征,并探索了制备银纳米粒子的最佳实验条件。通过将银纳米粒子-聚合物溶液进行脱水,得到含有银纳米粒子的固态聚合物膜。将固态聚合物膜重新溶解于水,其水溶液的紫外可见光谱与脱水前的溶液进行了比较,发现两者性质并无明显差异。因此,将银纳米粒子分散固定在聚合物膜中是一种崭新而有效的银纳米粒子制备和存储方法。     

Scattering theory derivation of a 3D acoustic cloaking shell

Through acoustic scattering theory we derive the mass density and bulk modulus of a spherical shell that can eliminate scattering from an arbitrary object in the interior of the shell--in other words, a 3D acoustic cloaking shell. Calculations confirm that the pressure and velocity fields are smoothly bent and excluded from the central region as for previously reported electromagnetic cloaking shells. The shell requires an anisotropic mass density with principal axes in the spherical coordinate directions and a radially dependent bulk modulus. The existence of this 3D cloaking shell indicates that such reflectionless solutions may also exist for other wave systems that are not isomorphic with electromagnetics.