Site-Dependent TERS Study of a Porphyrin Molecule on Ag(100) at 7 K

Single-molecule tip-enhanced Raman spectroscopy (TERS) has emerged as an important technique for structural analysis at sub-molecular scale. Here in this work, we report aTERS study of an isolated free-base porphyrin molecule adsorbed on the Ag(100) surface at cryogenic temperature (∽7 K). Site-dependent TERS spectra reveal distinct local vibrational information for the chemical constituents within a single molecule. Moreover, distinct spatial features among di erent Raman peaks can be resolved from the TERS mapping images. These images are found to associate with related vibrational modes, enabling to resolve the mode associated with N-H bonds at the sub-nanometer level. This study will provide deep insights into the symmetry of adsorption con gurations and local vibrational information within a single molecule.     

Adsorption of 2-aminobenzothiazole on colloidal silver particles: an experimental and theoretical surface-enhanced Raman scattering study

Surface-enhanced Raman scattering (SERS) spectra of the biologically important 2-aminobenzothiazole (2-ABT) molecule adsorbed on silver hydrosols are compared with its FTIR spectrum and normal Raman spectroscopy (NRS) spectrum in the bulk and in solution. The optimized structural parameters and the computed vibrational wavenumbers of the compound have been estimated from ab initio (Hatree-Fock) and density functional calculations. Some vibrational modes of the molecule have been reassigned. Concentration-dependent SERS spectra of the molecule reveal the existence of two types of vertically adsorbed species on colloidal silver particles, whose relative population varies with the adsorbate concentrations. The adsorption geometry and structural parameters of one type of adsorbed species are related to the NRS spectrum of the chemically prepared and theoretically modeled 2-ABT-Ag(I) coordination compound.     

Oxadiazole‐2‐thiol Adsorption on Gold Nanorods: A Joint Theoretical and Experimental Study by Using SERS,XPS, and DFT

The chemisorption of 1,3,4‐oxadiazole‐2‐thiol (ODT) on gold nanorods has been investigated by using surface‐enhanced Raman spectroscopy (SERS) and density functional theory (DFT). Although most of the SERS spectra have remarkable similarity to the normal Raman spectra of the pure analyte, the adsorption of ODT on a gold surface leads to a drastic change in its Raman spectrum and distinct vibrational features are obtained with gold nanorods and spherical nanoparticles. Simulated Raman spectra for hybrid systems that consist of an oxadiazole moiety coordinated to a Au₂₀ gold cluster provided valuable information about the coordination mode and enabled us to assign vibration modes.     

密度泛函理论研究银上吸附对巯基吡啶的SERS化学增强效应

基于密度泛函理论计算和拉曼光谱理论分析,我们研究了对巯基吡啶(4MPY)分子的拉曼光谱和其在银上的表面增强拉曼光谱(SERS),并进一步探讨了SERS与界面吸附结构、异构化、质子化和氢键作用以及低能激发态的关系。首先,我们对两种分子异构体的相对稳定性和拉曼光谱进行了理论分析。在此基础上,进而研究了该分子与不同银簇作用时的拉曼光谱,结果表明,4MPY以巯基硫与银簇作用形成强的Ag―S键,导致拉曼光谱的线型不依赖于所选银簇的大小。接着我们考虑了吡啶氮端作用的两种情况。(1)当4MPY-银簇复合物同时以吡啶氮与水簇或水合质子簇形成氢键时,结果表明吡啶环的部分振动频率随氢键和质子化发生蓝移。(2)当考虑吡啶氮与银簇作用时,吡啶环三角畸变振动发生蓝移。上述情况不仅解释了实验观测的振动频率变化,而且表明了化学环境改变对相对拉曼强度的影响。最后,我们计算了当对巯基吡啶分子以单端或双端与银簇作用,在考虑激发光与低能激发态的能量匹配时,拉曼光谱强度与低能激发态的关系。计算结果表明,在双端吸附构型下,与吡啶氮成键的银簇受激发产生电荷转移态,不仅导致吡啶环v_(12)、v_1和v_(8a)振动的拉曼信号增强,而且选择性地增强吡啶环C―H面内对称弯曲振动v9a的拉曼信号。     

过渡金属表面α-吡啶基的振动光谱学判据

基于簇模型采用密度泛函理论在B3LYP/6-311+G^**/LANL2DZ(metal)基组水平上计算了吡啶及α-吡啶基吸附于Pt、Pd、Rh、Ni四种金属表面的红外和拉曼光谱. 通过详细地分析和比较计算结果与文献报道的实验谱图, 提出了以N端吸附的吡啶分子和α-吡啶基这两种表面物种各自存在的谱学判据. 计算结果表明在以上四种金属表面, α-吡啶基的拉曼活性比吡啶的小, 而特征谱峰的红外强度与吡啶相当. 该结果表明红外光谱是检测金属表面α-吡啶基的有效手段, 也解释了采用表面增强拉曼光谱和红外光谱研究吡啶吸附在金属表面得出不同结构的原因.     

Metal-specific interactions of H2 adsorbed within isostructural metal-organic frameworks

Diffuse reflectance infrared (IR) spectroscopy performed over a wide temperature range (35-298 K) is used to study the dynamics of H(2) adsorbed within the isostructural metal-organic frameworks M(2)L (M = Mg, Mn, Co, Ni and Zn; L = 2,5-dioxidobenzene-1,4-dicarboxylate) referred to as MOF-74 and CPO-27. Spectra collected at H(2) concentrations ranging from 0.1 to 3.0 H(2) per metal cation reveal that strongly red-shifted vibrational modes arise from isolated H(2) bound to the available metal coordination site. The red shift of the bands associated with this site correlate with reported isosteric enthalpies of adsorption (at small surface coverage), which in turn depend on the identity of M. In contrast, the bands assigned to H(2) adsorbed at positions >3 ? from the metal site exhibit only minor differences among the five materials. Our results are consistent with previous models based on neutron diffraction data and independent IR studies, but they do not support a recently proposed adsorption mechanism that invokes strong H(2)···H(2) interactions (Nijem et al. J. Am. Chem. Soc.2010, 132, 14834-14848). Room temperature IR spectra comparable to those on which the recently proposed adsorption mechanism was based were only reproduced after contaminating the adsorbent with ambient air. Our interpretation that the uncontaminated spectral features result from stepwise adsorption at discrete framework sites is reinforced by systematic red shifts of adsorbed H(2) isotopologues and consistencies among overtone bands that are well-described by the Buckingham model of molecular interactions in vibrational spectroscopy.     

Theoretical Simulation of Vibrational Sum‐Frequency Generation Spectra from Density Functional Theory: Application to p‐Nitrothiophenol and 2,4‐Dinitroaniline

The molecular orientation of adsorbed molecules forming self‐assembled monolayers can be determined by combining vibrational sum‐frequency generation (SFG) measurements with quantum chemical calculations. Herein, we present a theoretical methodology used to simulate the SFG spectra for different combinations of polarizations. These simulations are based on calculations of the IR vectors and Raman tensors, which are obtained from density functional theory computations. The dependency of the SFG vibrational signature with respect to the molecular orientation is presented for the molecules p‐nitrothiophenol and 2,4‐dinitroaniline. It is found that a suitable choice of basis set as well as of exchange‐correlation (XC) functional is mandatory to correctly simulate the SFG intensities and consequently provide an accurate estimation of the adsorbed molecule orientation. Comparison with experimental data shows that calculations performed at the B3LYP/6‐311++G(d,p) level of approximation provide good agreement with experimental frequencies, and with IR and Raman intensities. In particular, it is demonstrated that polarization and diffuse functions are compulsory for reproducing the IR and Raman spectra, and consequently vibrational SFG spectra, of systems such as p‐nitrothiophenol. Moreover, the investigated XC functionals reveal their influence on the relative intensities, which show rather systematic variations with the amount of Hartree–Fock exchange. Finally, further aspects of the modeling are revealed by considering the frequency dependence of the Raman tensors.     

Visualization of Vibrational Modes in Real Space by Tip‐Enhanced Non‐Resonant Raman Spectroscopy

We present a general theory to model the spatially resolved non‐resonant Raman images of molecules. It is predicted that the vibrational motions of different Raman modes can be fully visualized in real space by tip‐enhanced non‐resonant Raman scattering. As an example, the non‐resonant Raman images of water clusters were simulated by combining the new theory and first‐principles calculations. Each individual normal mode gives rise its own distinct Raman image, which resembles the expected vibrational motions of the atoms very well. The characteristics of intermolecular vibrations in supermolecules could also be identified. The effects of the spatial distribution of the plasmon as well as nonlinear scattering processes were also addressed. Our study not only suggests a feasible approach to spatially visualize vibrational modes, but also provides new insights in the field of nonlinear plasmonic spectroscopy.     

Theoretical Vibrational Raman and Surface‐Enhanced Raman Scattering Spectra of Water Interacting with Silver Clusters

In this study, we analyzed the Raman spectrum of a water molecule adsorbed on a cluster of 20 silver atoms, and the plasmonic electromagnetic effect of the silver surface was also considered to give a theoretical prediction of the surface‐enhanced Raman scattering spectrum. The calculations were performed at the density functional theory (DFT) level by using both frozen and unfrozen silver clusters. Two different models were used to consider the plasmonic enhancement; one of them was a modified classical (dipole) model and the other was the coupled perturbed Hartree–Fock method with excitation frequencies obtained from time‐dependent DFT calculations and with proper detuning of these frequencies. The importance of small geometrical distortions of the silver surface in the orientation of the adsorbed water was shown. Moreover, it was shown how the symmetry of the transition dipole moment and the symmetry of the vibrational modes influence the Raman intensities of the SERS spectrum.     

Electronic and vibrational spectra of Mn rich sursassite

The optical spectrum of Mn2+ in octahedral coordination for sursassite is characterized by well resolved bands at 580, 515, 470, 390, 340, and 295 nm (17240, 19420, 21280, 25640, 29410 and 33900 cm-1). Crystal field parameters evaluated from the observed bands are Dq=690, B=680 and C=2800 cm-1. A broad band centred around 13000 cm-1 attributed to Fe(III) ion is an impurity in sursassite confirmed from EDX analysis. Vibrational spectra have been investigated both by IR and Raman spectroscopy. The correlation between vibrational modes and the structural properties of the manganese silicate, sursassite, is made and compared with other silicates. Two vibrational modes of CO(3)2- observed; the antisymmetric stretching mode (nu3) at 1420 cm-1 (IR active) and the out-of-plane bending mode (nu2) (IR and Raman active) at approximately 875 cm-1. This confirms the Mn rich phases in sursassite as observed from SEM probably an Mn carbonate-rhodochrosite.     

Density Functional Theory Study of HCN Adsorption on Small Gold Clusters

A theoretical study was carried out on the adsorption of hydrocyanic acid on small Aun （n ≤ 7） clusters using density functional methods. For HCN adsorption on gold clusters, no dependence was found with respect to the even-odd alternation in relation to the number of gold atoms in the cluster. The HCN molecule is adsorbed at simple adsorption sites （1-fold coordination）, perpendicular to the adsorption site. The largest adsorption energy is only about 74.61 kJ·mol^-1, which indicates that the HCN molecule does not decompose and the C-N bond retains triple bond, and that the C-H and C-N stretching frequencies are only weakly perturbed. The adsorbed C-N and C-H stretching frequencies are blue- and red-shifted compared with the values of free HCN, respectively.     

Binding interactions and Raman spectral properties of pyridine interacting with bimetallic silver-gold clusters.

The binding interactions between pyridine and bimetallic silver-gold clusters are investigated using density functional theory (DFT). The binding energies of pyridine-bimetallic cluster complexes indicate that the bonding depends strongly on the binding site (Au or Ag atom) and bonding molecular orbitals in a given configuration. The donation of the lone-pair electrons of the nitrogen of pyridine to an appropriate unoccupied orbital of each metal cluster plays an important role. The low-lying excited states and charge-transfer states of four stable complexes of interest are calculated on the basis of a time-dependent DFT method. In nonresonance Raman scattering processes, the influence of binding interactions on the relative Raman intensity of totally symmetric pyridine vibrational modes is discussed. These calculated relative Raman intensities are compared with observed surface-enhanced Raman spectra of pyridine adsorbed on silver-gold alloy surfaces.     

A frequency domain existence proof of single-molecule surface-enhanced Raman spectroscopy

The existence of single-molecule surface-enhanced Raman spectroscopy (SMSERS) is proven by employing a frequency-domain approach. This is demonstrated using two isotopologues of Rhodamine 6G that offer unique vibrational signatures. When an average of one molecule was adsorbed per silver nanoparticle, only one isotopologue was typically observed under dry N2 environment. Additionally, the distribution of vibrational frequencies hidden under the ensemble average is revealed by examining the single-molecule spectra. Correlation with transmission electron microscopy reveals that SMSERS active aggregates are composed of multiple randomly sized and shaped nanoparticles. At higher coverage and in a humid environment, adsorbate interchange was detected. Using 2D cross correlation, vibrational modes from different isotopologues were anti-correlated, indicating that the dynamic behavior was from multiple molecules competing for a single hot spot. This allows hot-spot diffusion to be directly observed without analyzing the peak intensity fluctuations.     

p-π共轭分子的氨基面外弯曲振动模的拉曼光谱

拉曼光谱是一种用途广泛的无损分子检测技术,其能够提供化学物质的分子结构指纹信息.一种面外弯曲振动模被称作wagging振动,它的信号尤为特殊,其频率和强度都非常依赖于检测环境.以乙烯胺和苯胺为例,采用密度泛函理论计算研究了p-π共轭分子分别与水簇和银簇作用的平衡结构、成键作用和拉曼光谱.结果表明,弱相互作用,如分子与金属表面的弱吸附作用以及分子与水之间的氢键作用,均使氨基面外弯曲振动模(ωNH2)的拉曼信号发生显著的变化.考虑溶剂化效应后,氢键作用减弱,计算拉曼光谱趋于一致.通过进一步对电子结构的分析,解释了面外弯曲振动信号显著增强的原因,揭示了面外弯曲振动模与分子p-π共轭作用之间的关系.     

Vibrational Spectroscopy in Supercritical Fluids: From Analysis and Hydrogen Bonding to Polymers and Synthesis

Supercritical fluids are beginning to be used widely in chemistry. Applications range from extraction and chromatography in analytical chemistry to solvents for reaction chemistry and preparation of new materials. Spectroscopic monitoring is important in much of supercritical chemistry, and vibrational spectroscopy is particularly useful in this context because the vibrational spectrum of a given molecule is usually quite sensitive to the environment of that molecule. Thus, vibrational spectra are excellent probes of conditions within the fluid. In this review, we describe a variety of techniques and cells for IR and Raman spectroscopy in supercritical fluids and illustrate the breadth of applications in supercritical fluids. The examples include: the use of supercritical Xe as a spectroscopically transparent solvent for chemistry and for supercritical fluid chromatography with FTIR detection of analytes; Raman spectroscopy as a monitor for gases dissolved in supercritical CO₂; the effect of solvent density on hydrogen bonding in supercritical fluids and the formation of reverse micelles; IR as a monitor for the supercritical impregnation/extraction of polymers and the reactions of organometallic compounds impreganated into polymers; reactions of organometallic compounds in supercritical fluids; and finally, the use of miniature flow reactors for laboratory-scale preparative chemistry. Overall, our aim is to provide a starting point from which individual readers can judge whether such measurements might usefully be applied to their own particular problems.     

Destructive adsorption of CCl4 over lanthanum-based solids: linking activity to acid-base properties

The relative activities of a low-surface crystalline and high-surface amorphous LaOCl, further denoted as S1 and S2, have been compared for the destructive adsorption of CCl4. It was found that the intrinsic activity of S2 is higher than that of S1. Both samples were characterized with X-ray diffraction (XRD), X-ray photoelectron spectroscopy (XPS), N2-physisorption, and Raman and infrared (IR) spectroscopy. IR was used in combination with CO2, CO, and methanol as probe molecules. The CO2 experiments showed that different carbonate species are formed on both materials. For S1, a high surface concentration of bidentate carbonate species and a lower concentration of monodentate carbonate were observed. In the case of S2, bulk carbonates were present together with bridged carbonates. CO adsorption shows that S2 and S1 have very similar Lewis acid sites. However, methanol adsorption experiments showed that S2 had a higher number of stronger Lewis acid sites than S1 and that twofold coordinated methoxy species were more strongly bound than threefold coordinated methoxy species. Because of the analogy between methanol dissociation and the removal of the first chlorine atom in the destructive adsorption of CCl4, the sites enabling twofold coordination were likely to be the same Lewis acid sites actively involved in the destructive adsorption of CCl4. La2O3 was less active than the two LaOCl materials, and therefore, the intrinsic activity of the catalyst increases as the strength of the Lewis acid sites increases. S2 contains more chlorine at the surface than S1, which is expressed by the higher number of sites enabling twofold coordination. Moreover, this explains the difference in destructive adsorption capacity for CCl4 that was observed for the samples S1 and S2. Since LaCl3, being the most acidic phase, is not active for the destructive adsorption of CCl4, basic oxygen atoms, however, remain needed to stabilize the reaction intermediate CCl3 as La-O-CCl3.     

Application of THz Vibrational Spectroscopy to Molecular Characterization and the Theoretical Fundamentals: An Illustration Using Saccharide Molecules

This work illustrates several theoretical fundamentals for the application of THz vibrational spectroscopy to molecular characterization in the solid state using two different types of saccharide systems as examples. Four subjects have been specifically addressed: (1) the qualitative differences in the molecular vibrational signatures monitored by THz and mid‐IR vibrational spectroscopy; (2) the selection rules for THz vibrational spectroscopy as applied to crystalline and amorphous systems; (3) a normal mode simulation, using α‐l ‐xylose as an example; and (4) a rigorous mode analysis to quantify the percentage contributions of the intermolecular and intramolecular vibrations to the normal mode of interest.     

苯乙炔吸附在金电极上的现场表面增强拉曼光谱研究

采用电化学现场表面增强拉曼光谱研究了苯乙炔在金电极上的吸附行为及表面反应过程. 负电位下拉曼光谱的变化表明, 苯乙炔分子的炔端碳与金属电极成键, 分子垂直吸附于金电极表面. 在所研究的负电位区间内, 分子在电极表面的吸附取向并未随电位发生改变. 电化学现场光谱研究表明, 苯乙炔分子随电位负移, 碳碳叁键被加氢还原. 通过对比苯乙烯的现场表面增强拉曼光谱发现, 在－0.6 V至－1.2 V的电位区间内, 苯乙炔经过中间步骤生成苯乙烯, 最终被完全加氢为苯乙烷.     

Identification of lipid aggregate structures on TiO2 surface using headgroup IR bands

Attenuated total reflection-Fourier transform infrared (ATR-FTIR) spectroscopy was used to study the nature of the dipalmitoylphosphatidylcholine (DPPC) aggregated structures adsorbed on TiO(2). DPPC molecules were assembled on TiO(2) using Langmuir-Blodgett (LB) deposition methods or by directly flowing the DPPC liposome solution across the TiO(2)-coated ATR crystal. We found that there is a direct correlation between the intensity and frequency position of the zwitterionic headgroup IR bands and the nature of LB films. Specifically, we have shown that the bands due to PO(2)(-) modes are sensitive to changes in the degree of hydration of the LB films and that the symmetric deformation vibrational mode (delta(s) (+)N-CH(3)) is sensitive to interaction with oppositely charged surface sites. Using this information, we found that the liposomes adsorbed on TiO(2) remain intact as vesicles and that the vesicles are stable and not removed in flowing water. We have also shown that the antisymmetric deformation vibrational (delta(as) (+)N-CH(3)) modes are sensitive to changes in lateral-lateral DPPC interactions. This information was used to show that there is a lateral interaction between each positively charged (+)N(CH(3))(3) headgroup and negatively charged PO(2)(-) headgroup of the adjacent DPPC molecule in the adsorbed vesicles and LB films. This study provides a framework for the use of this IR technique in studies of adsorption and transport of molecules across membrane interfaces.