多氯联苯分子结构参数与色谱焓、熵变化的定量关系

 通过理论分析与研究,提出了描述多氯联苯(PCBs)氯原子数目与取代位置有关的分子拓扑指数结构参数JG以及描述多氯联苯分子中氯原子之间相邻关系的分子拓扑指数邻接参数LJ,并推导出PCBs在色谱过程中的焓变(ΔH)、似溶解熵变(ΔS′)与结构参数JG、邻接参数LJ的关系式。在DB-1,DB-5,DB-1701等3种固定相上测定了140余种PCB的ΔH、ΔS′数值,并运用所推导出的关系式对ΔH和ΔS′进行了预测,收到良好的效果,ΔH和ΔS′的理论计算值与实验值的平均相对偏差分别为0.56%~0.97%和0.55%~1.06%，接近实验数据本身的相对偏差。     

一种改进的分子连接性指数

通过修正分子连接性指数中的点价,使分子轨道理论与分子拓扑理论有机地结合起来,将分子连接性指数改进成为一种量子拓扑指数．实际计算表明,改进后的指数不但保留了原分子连接性指数的优点,而且还弥补了量化指数和分子拓扑指数的一些缺陷。     

有机分子的拓扑结构及其应用

通过研究新教材课后习题，借助拓扑学基本原理，建立了有机分子拓扑结构，分析了有机分子不饱和度的内涵，阐明了计算各类有机分子不饱和度的原理，介绍了书写有机分子结构和有机反应方程式的技巧，为学习和理解有机化学提供了新的思路和视角。     

半经验分子轨道法的电子密度拓扑分析（Ⅱ）

化学反应过程中的过渡态结构及氢键的拓扑性质,是近年来刚刚涉及的课题,本文讨论了文献[1]的方法对偏离平衡构型的过渡态结构及超分子体系的可用性问题及对计算精度较敏感的电子密度拉普拉斯量的拓扑特性。     

金衬底上阴、阳离子型硫醇分子的量子化学计算

采用量子化学程序Gaussian98从头计算方法，对用做金衬底离子化的2—巯基乙基—二甲基氯化铵和3—巯基丙磺酸钠两种硫醇分子进行了全优化计算，得到了这两种化合物的平衡几何构型、基态能量、分子轨道组成和电荷分布等，并分析讨论了其分子轨道作用性质以及自由硫醇分子和金表面的相互作用．研究发现，表面分子基团带有大部分的净电荷，说明利用金与硫醇分子的自组装可实现金衬底的离子化。     

交替烃拓扑结构计数的研究

交替烃拓扑结构计数的研究余荣泮，杨良准，刘训亭，胡启山，张自先，莫宇翔，陈琼，王成瑞（武汉大学化学系武汉４３００７２）关键词拓扑结构计数，交替烃，分子轨道分子稳定性的研究是理论化学中一个重要课题，关于这方面的工作，共振论是富有成效的理论之一。在偶苯型...     

取代1-氯蒽醌中分子内卤键的电子密度拓扑分析

运用量子化学密度泛函B3LYP方法,在6-311＋＋G（d,p）基组水平上对邻位和间位取代1-氯葸醌的分子内卤键进行了研究．用电子定域函数和“分子中的原子,,理论对分子内卤键的性质进行了电子密度拓扑分析．通过对计算得到的密度矩阵进行σ-π兀分离,得到了π-键的键径和分子图,并讨论了。电荷密度和兀电荷密度对卤键的影响．结果表明,键鞍点和环鞍点处的电子密度拓扑性质均可作为衡量分子内卤键强度的量度．键鞍点和环鞍点处的电荷密度P越大,键鞍点与环鞍点的距离越大,卤键强度越大．除σ电荷密度外,π电荷密度对分子内卤键的性质也有明显影响．     

分子力学计算的参数化过程

介绍了如何通过设计模型分子构造参数的方法和过程：首先设计模型分子；在平衡位置附近选择几个点，对模型分子进行分子力学和量子化学的计算；计算出量子化学能量Eqm和分子力学能量Emm的差值；然后对结构参数（健长，键角，二面角）和能量差值进行拟合，得拟合曲线的方程，从方程的系数可求出参数．文章给出了一些实例．     

势能面拓扑结构失稳与A+B2反应途径分叉条件

研究势能面拓扑结构对认识势能面的复杂性，分析势能面的关键区域，简化量化计算以及了解反应机理等都具有极其重要的意义＊．近些年来，关于势能面反应途径分又研究表明：势能面拓扑结构失稳会导致反应途径分叉，从而使得分子体系出现一系列新的现象和规律［’－’］．根本上来说，势能面拓扑结构最终由临界点的拓扑性质以及其数目所决定［‘1．因而研究势能面临界点的种类及其变化有至关重要的作用·本文用微分动力学系统定性方法分析了势能面上临界点的拓扑结构类型，并给出平面线性线系统势能面拓扑结构失稳的条件；针对三原子A＋BZ反…     

狭缝孔内甲烷蒸汽重整化学平衡的分子模拟

采用反应蒙特卡罗方法研究了狭缝孔内甲烷蒸汽重整反应的化学平衡. 模拟中将CH4, CO和H2均描述成球形LJ分子, H2O和CO2分子的势能分别采用TIP4P和EMP2模型计算. 狭缝孔壁与LJ点位之间的相互作用采用Steele的10-4-3模型计算. 由于没有狭缝孔内该反应的实验数据, 因此比较了用经典热力学预测与RCMC方法得到的主体相平衡组成. 两种方法得到的结果比较吻合, 表明采用RCMC方法预测孔内的化学平衡是可靠的. 讨论了其它工艺条件对孔内化学平衡的影响.     

A versatile method for molecular structure determinations from ground state rotational constants

A new procedure is described to determine the geometrical structure of a molecule. It starts from measured ground state rotational constants of isotopically substituted species. Internal structural parameters such as bond lengths, bond angles and dihedral angles are directly fitted with a suitable least-squares algorithm. The new method for structure determination is compared to the usual Costain—Kraitchman substitution method. It contains less stringent conditions than the latter, permits a broad range of applications and provides a reliable molecular structure.     

Ni2 分子的自旋极化效应

The density functional（B3P86）method has been used to optimize the structure of Ni2 molecule. Results show that the ground state for Ni2 molecule is 5 multiple state,not 1 multiple state and 3 multiple state the literatures concluded. That shows the spin polarization effect of Ni2 molecule of transition metal elements for the first time. They take 1 multiple state and 3 multiple state as the ground state of the Ni2 molecule because the minimal energy value of 1 multiple state,3 multiple state and 5 multiple state of Ni2 molecule are very close to each other. Meanwhile,we have not found out any spin pollution and the ground state wave function doesn't mingle with wave function with higher energy state. The result shows that the ground state for Ni2 molecule is 5 multiple state,which shows the spin polarization effect of Ni2 molecule of transition metal elements. That is,there exist 4 parallel spin electrons,at this time;the number of the non-conjugated electron is the most. These electrons occupy different spacious tracks so that the energy of Ni2 molecule reduces to the minimum. It shows that the effect of parallel spin of Ni2 molecule is larger than the effect of the conjugated molecule. It is obviously related to the effect of electron d delocalization. The Murrell-Sorbie potential function with the parameters for ground state for Ni2 molecule are also derived. Dissociation energy of the ground state Ni2 molecule is 1.835 eV,the equilibrium bond length is 0.2243 nm,and the vibration frequency is 262. 35 cm-1 . The force constants f2,f3 and f4 are 1.1901 aJ / nm2,-5.8723 aJ/nm3,21.2505 aJ/nm4 respectively.     

基态Li2O＋分子的结构和势能面研究

以6-311＋＋G(d)为基函数, 采用CASSCF方法优化出Li2O＋分子的稳定构型为线形Li-O-Li (C∞V), 电子组态为2∏, 并对平衡核间距、离解能和基态简正频率进行了计算. 根据原子分子反应静力学原理, 导出了Li2O＋分子的合理的离解极限. 并运用多体展式理论方法首次导出了基态Li2O＋分子的分析势能函数, 绘出了势能等值图, 其势能等值图准确地再现了Li2O＋分子的平衡结构特征.     

A computational study of organic polyradicals stabilized by chromium atoms

Density functional theory has been used to investigate the properties of organic high spin molecules. The M05/cc-pVDZ calculations predict a septet ground state for the 2,3,6,7,10,11-hexahydro-1,4,5,8,9,12-hexaoxocoronene-2,3,6,7,10,11-hexayl radical (coronene-6O). The computations show further that the formation of intermolecular carbon-carbon bonds yields a singlet ground state for the dimer rather than a possible tridectet state as expected from the monomer's multiplicity. A benzene molecule placed between coronene-6O molecules leads to the desired high-spin cluster, but the overall stability of the cluster is low. A chromium atom inserted between two peripheral C(6) rings of coronene-6O yields a sandwich structure with the expected tridectet ground state and a binding energy which is 15 times larger than the corresponding tridectet dimer stabilized by a benzene molecule. The presented DFT calculations suggest that a chromium atom can effectively link organic polyradicals to larger magnetic units.     

A theoretical study of the effect of the molecular structure on the electronic transition probabilities after the 14Cβ-decay

Using wavefunctions from ab initio and INDO calculations, the probability that a molecule, of which a carbon atom undergoes β-decay, passes from its ground state to the ground state of the daughter ion, is studied. It is shown that the electronic part of this transition probability is almost independent of the molecular structure and of elec- tronic factors like aromaticity. Furthermore, the effect of β-decay on the electronic structure of a molecule turns out to be restricted to the direct environment of the decaying carbon atom.     

The Holographic Principle for Latent Molecular Properties

All information about all latent molecular properties, not exhibited by a given molecular structure but reproducibly exhibited by the same molecule in a different state or having a different conformation, is fully encoded in any nonzero volume of the non-degenerate ground state electron density.     

Scaled opposite-spin CC2 for ground and excited states with fourth order scaling computational costs

An implementation of scaled opposite-spin CC2 (SOS-CC2) for ground and excited state energies is presented that requires only fourth order scaling computational costs. The SOS-CC2 method yields results with an accuracy comparable to the unscaled method. Furthermore the time-determining fifth order scaling steps in the algorithm can be replaced by only fourth order scaling computational costs using a "resolution of the identity" approximation for the electron repulsion integrals and a Laplace transformation of the orbital energy denominators. This leads to a significant reduction of computational costs especially for large systems. Timings for ground and excited state calculations are shown and the error of the Laplace transformation is investigated. An application to a chlorophyll molecule with 134 atoms results in a speed-up by a factor of five and demonstrates how the new implementation extends the applicability of the method. A SOS variant of the algebraic diagrammatic construction through second order ADC(2), which arises from a simplification of the SOS-CC2 model, is also presented. The SOS-ADC(2) model is a cost-efficient alternative in particular for future extensions to spectral intensities and excited state structure optimizations.     

Structural and charge‐transfer properties of indolylfulgides

The structural and electronic properties of a photochromic molecule dictate their potential photochemical activity. To gain insight into these influences, the ground‐state structure and excited state properties of six indolylgulgides were calculated using several time dependent‐density functional theory (DFT) (TD‐DFT)//DFT methods, second‐order M?ller–Plesset (MP2), and CIS(D). These methods simulated the charge‐transfer properties and the conformation of the ground‐state structure for each molecule. Generally, TD‐DFT accurately simulated the expected charge‐transfer state. The degree of spatial overlap of the occupied and virtual molecular orbitals involved in the S₁ transition of indolylfulgides quantitatively assessed their charge‐transfer character and was qualitatively useful in assessing their photochromic activity. The M06, M06‐2X, and M11 structures were quite similar to those calculated by MP2. Structural differences, similarities, and functional trends are compared and discussed. © 2013 Wiley Periodicals, Inc.     

Molecular design for high-spin molecules in view of vibronic couplings

A high-spin ground state is possible if a molecule has degenerate or pseudo-degenerate frontier orbitals. Since strong vibronic couplings, or electron-vibration interactions give rise to reduce the degeneracy or pseudo degeneracy, a lower-spin state is the ground state in such a molecule. Therefore small vibronic couplings are desirable for designing molecules with a high-spin ground state. Vibronic coupling constants of derivatives of m-phenylene diamine are evaluated. The calculated results are analyzed based on vibronic coupling density which enables us to control the vibronic coupling constants. Based on the vibronic coupling density analysis, we succeed in recovering the high-spin ground state from the closed-shell singlet ground state of a methoxy derivative of m-phenylene diamine by introducing an appropriate substituent.     

Quinoidal Oligo(9,10‐anthryl)s with Chain‐Length‐Dependent Ground States: A Balance between Aromatic Stabilization and Steric Strain Release

Quinoidal π‐conjugated polycyclic hydrocarbons have attracted intensive research interest due to their unique optical/electronic properties and possible magnetic activity, which arises from a thermally excited triplet state. However, there is still lack of fundamental understanding on the factors that determine the electronic ground states. Herein, by using quinoidal oligo(9,10‐anthryl)s, it is demonstrated that both aromatic stabilisation and steric strain release play balanced roles in determining the ground states. Oligomers with up to four anthryl units were synthesised and their ground states were investigated by electronic absorption and electron spin resonance (ESR) spectroscopy, assisted by density functional theory (DFT) calculations. The quinoidal 9,10‐anthryl dimer 1 has a closed‐shell ground state, whereas the tri‐ ( 2 ) and tetramers ( 3 ) both have an open‐shell diradical ground state with a small singlet–triplet gap. Such a difference results from competition between two driving forces: the large steric repulsion between the anthryl/phenyl units in the closed‐shell quinoidal form that drives the molecule to a flexible open‐shell diradical structure, and aromatic stabilisation due to the gain of more aromatic sextet rings in the closed‐shell form, which drives the molecule towards a contorted quinoidal structure. The ground states of these oligomers thus depend on the overall balance between these two driving forces and show chain‐length dependence.