Direct detection of DNA using 3D surface enhanced Raman scattering hotspot matrix

Silver nanoparticles (AgNPs) are evaporatively self‐assembled into the 3D surface enhanced Raman scattering (SERS) hotspot matrix with the assistant of glycerol to improve the spectral reproducibility in direct DNA detection. AgNPs and DNA in the glycerol‐stabilized 3D SERS hotspot matrix are found to form flexible sandwich structures through electrostatic interaction where neighboring AgNPs create uniform and homogeneous localized surface plasmon resonance coupling environments for central DNA. Nearly two orders of magnitude extra SERS enhancement, more stable peak frequency and narrower peak full width at half maximum can therefore be obtained in DNA SERS spectra, which ensures highly stable and reproducible SERS signals in direct detection of both single strand DNA and double strand DNA utilizing the 3D SERS hotspot matrix. By normalizing the SERS spectra using phosphate backbone as internal standard, identification of single base variation in oligonucleotides, determination of DNA hybridization events and recognition of chemical modification on bases (hexanethiol‐capped at 5’ end) have been demonstrated experimentally. This proposed 3D SERS hotspot matrix opens a novel perspective in manipulating plasmonic nanoparticles to construct SERS platforms and would make the surface enhanced Raman spectroscopy a more practical and reliable tool in direct DNA detection.     

自组装DNA吸附取向的表面增强拉曼光谱法研究

对金基体上自组装寡聚核苷酸探针杂交前后进行电化学非现场及现场表面增强拉曼光谱(SERS)研究.非现场SERS研究表明,杂交形成的dsDNA在基体表面以A型和B型两种构象同时存在,杂交过程可能伴随DNA链在基体表面吸附取向的变化.根据现场SERS研究结果可知,ssDNA及dsDNA的大多数SERS谱带强度随电极电位正移而降低,尤其是归属于碱基A的两种面外振动模式,谱带变化更为明显.利用SERS表面选择定则判断出随着电极电位由负向正变化,ssDNA及dsDNA螺旋吸附取向由垂直吸附向平躺吸附于金基体表面变化.     

Surface-Enhanced Raman Scattering (SERS) on transition metal and semiconductor nanostructures

Surface-Enhanced Raman Scattering (SERS) spectroscopy has experienced a rapid growth over the past 30 years, and has become a valuable tool in various research areas. In conjunction with recent explosive development of nanoscience and nanotechnology, the SERS-active substrates have also expanded from traditional Group 11 metals (Au, Ag, Cu) to non-Group 11 nanostructures. This paper gives an overview of historical advances in the use of non-Group 11 nanostructures as substrates for SERS. Several possible mechanisms and important factors for SERS from non-Group 11 nanostructures are discussed in detail. The SERS from non-Group 11 nanostructures provides many significant applications in surface, interface analysis and biochemical detection. It is reasonable to believe that the advancement in the non-Group 11 nanostructures-based SERS-active substrates will lead to a more promising future for the SERS technology in surface science, spectroscopy and biomedicine.     

银电极上4-氨基安替比林原位表面增强拉曼光谱电化学

在银电极表面4-氨基安替比林(4-AAP)分子自组装,形成单分子膜层.应用表面增强拉曼散射(SERS)光谱原位考察不同电位下4-AAP在电极表面的吸附机理及其组装液pH值对组装分子与银作用方式的影响.依据密度泛函数(DFT)理论预测4-AAP分子振动模式及其SERS光谱归属.结果表明:在开路电位下,组装层中的4-AAP分子以N15和O3为位点,由苯环倾斜和比林环垂直的方式吸附在银表面;但随着外加电位负移,4-AAP分子的苯环趋于垂直吸附而比林环则逐渐以平行方式靠近银表面.在-0.8V电位下,4-AAP分子从银表面脱附.酸性溶液中组装,形成的4-AAP膜层以N15和O3为位点吸附于银表面,比林环倾斜而苯环直立;碱性条件下,分子的吸附位点不变,比林环呈平行取向,而苯环倾斜于银表面.     

Chiral Carbonaceous Nanotubes Modified with Titania Nanocrystals: Plasmon‐Free and Recyclable SERS Sensitivity

Chiral carbonaceous nanotubes (CNT) were successfully used in plasmon‐free surface‐enhanced Raman scattering (SERS) for the first time. Further modification of TiO₂ nanocrystals on the chiral CNTs successfully realized the recycling of SERS substrate as chiral CNT/TiO₂ hybrids. The high SERS sensitivity of methylene blue (MB) over the chiral CNT/TiO₂ hybrids is ascribed to the laser‐driven birefringence induced by the helical structure, which provides much more opportunities for the occurrence of Raman scattering. The TiO₂ nanocrystals highly dispersed on the surface and inside the hollow cavity of chiral CNTs can completely degrade the MB under the solar light irradiation, leading to the self‐cleaning of SERS substrate. The present research opens a new way for the application of chiral inorganic materials in plasmon‐free SERS detection.     

Surface-enhanced Raman scattering (SERS) from different azobenzene self-assembled monolayers and sandwiches

Self-assembled monolayers (SAMs) of functionalized azobenzene thiols (RAzoCnSH, n=3-6 for R=H, abbreviated as AzoCnSH; and n=4 for R=CH(3)CONH, abbreviated as aaAzoC4SH) on different substrates RAzoCnSz.sbnd;z.sfnc;S (S represents substrates of vacuum-deposited gold (Au), silver foil (Ag), HNO(3) etched silver foil (EAg), and silver mirror (mAg)) have been studied by SERS in the near-infrared region. SERS of the SAMs on EAg and/or mAg exhibit SERS effects that vary with etching time and/or deposition time. The most appropriate time is 5 s for etching in 1:1 HNO(3) and 40 s for deposition in 0.1 M Ag(NH(3))(2)NO(3). Further, a layer of Ag mirror was conveniently deposited on the top of the SAMs on different substrates, yielding a more efficient SERS-active system possessing a "sandwiched" structure of mAgz.sfnc;RAzoCnS-z.sfnc;S. An appropriate surface roughness is required for the strongest SERS effect. Scanning electron microscopy (SEM) indicates that there exist a large number of projects around 100 nm on the surface showing the strongest SERS effect. When the surface roughness is decreased or increased, the SERS effect decreases sharply. The relationship between the SERS effect and the structural nature was investigated and showed that the enhancement factor decays exponentially with increasing in distances of the azobenzene group from the underlying substrate or the overlying silver mirror. This result reveals that the SERS effect may be the result of the electromagnetic coupling effect between two metal layers.     

寡聚脱氧核苷酸吸附状态随电位的变化

利用原位电化学及表面增强拉曼散射（SERS）光谱方法对寡聚脱氧核苷酸（26-mers ODN和13-mers ODN）在银电极表面上的吸附状态进行了研究. 实验表明, 单链寡聚脱氧核苷酸在银电极上有很好的SERS光谱,单链寡聚脱氧核苷酸在银表面上主要以碱基腺嘌呤（A）为吸附点,吸附状态随电位变化而变化, 链长较短的寡聚脱氧核苷酸在银电极表面的吸附态对电位变化较敏感.     

Surface-enhanced Raman Scattering of Self-assembled Superstructures

Surface-enhanced Raman scattering(SERS) is a molecular specific spectroscopic technique that amplifies the Raman signal of absorbed molecules for up to 10¹⁰times. Over the past decades, SERS substrates experienced rapid growth, resulting in excellent development for SERS analysis. Because the surface plasmonic resonance coupling between individual materials can form a "hotspot" region to maximize the Raman signal, among many substrate construction strategies, self-assembly attracts more attention in constructing superstructures with strong, uniform and stable SERS activity. In addition, a number of plasmon-free nanomaterials with appropriate superstructures samely show enhanced SERS activity, which is primarily attributed to the formation of the optical resonator. This review aims to provide a scientific synopsis on the progress of self-assembled superstructures for SERS and ignite new dis˗ coveries in the SERS platform, as well as SERS applications in various fields.     

Detection of volatile organic compounds using surface enhanced Raman spectroscopy substrates mounted on a thermoelectric cooler

Preliminary results for a volatile organic compound (VOC) sensor based on surface enhanced Raman spectroscopy (SERS) are described. The sensor is comprised of a SERS substrate mounted on a thermoelectric cooler (TEC). The SERS substrate is chemically modified with a thiol coating that prevents oxidation of the roughened silver surface and attracts the analyte of interest to the SERS surface. Using this sensor, detection of chlorinated solvents, aromatic compounds, and methyl t-butyl ether (MTBE) is demonstrated.     

Magnetism and application of NiFe@Au nanoparticles

This report describes the synthesis of magnetic NiFe@Au (i.e., NiFe core with Au shell) nanoparticles as functional spectroscopic probes. Both of the magnetic NiFe nanoparticles and its composite NiFe@Au particles were synthesized in aqueous solution. It is more analogous with the biological organism environment. The composite nanoparticles were dispersible in aqueous solution and could be directed by a magnetic field. Such NiFe@Au nanoparticles have been shown to function as magnetic and spectroscopic nanoprobes for surface enhanced Raman scattering (SERS) detection of molecules attached to the surface of the nanoparticles. It shows more potential functional SERS nanoprobes for biomolecular separation and detection.     

Ag nanoparticles prepared by laser photoreduction as substrates for in situ surface-enhanced Raman scattering analysis of dyes

In this work Ag nanoparticles (AgNP) with surface-enhanced Raman scattering (SERS) activity were prepared and immobilized by laser irradiation on a water/ solid interface where the aqueous phase contains the Ag+ cation and the solid surface is of hydrophilic nature (glass and cellulose). The so-prepared AgNP demonstrated a high SERS effectiveness in the detection of dispersed adsorbates such as the case of the anthraquinonic dye alizarin. The size and SERS effectiveness of AgNP increases with the irradiation time, the laser power, and the cation concentration. Laser-induced AgNP can be classified into two classes attending to the morphology: spherical and planar. The latter are formed after longer irradiation times, being more active regarding the SERS efficiency. Ag photoreduction can be employed for in situ detection of the dye alizarin, but when the dye is placed on a hydrophilic substrate. Even so, this in situ SERS technique could be attractive for analytical applications involving the in situ detection of the analyzed species, such as the case of dyes in artistical objects, textiles, foods, and surface analysis in general.     

Detection of structurally similar adulterants in botanical dietary supplements by thin-layer chromatography and surface enhanced Raman spectroscopy combined with two-dimensional correlation spectroscopy

Thin-layer chromatography (TLC) coupled with surface enhanced Raman spectroscopy (SERS) has been widely used for the study of various complex systems, especially for the detection of adulterants in botanical dietary supplements (BDS). However, this method is not sufficient to distinguish structurally similar adulterants in BDS since the analogs have highly similar chromatographic and/or spectroscopic behaviors. Taking into account the fact that higher cost and more time will be required for comprehensive chromatographic separation, more efforts with respect to spectroscopy are now focused on analyzing the overlapped SERS peaks. In this paper, the combination of a TLC–SERS method with two-dimensional correlation spectroscopy (2DCOS), with duration of exposure to laser as the perturbation, is applied to solve this problem.     

Characterization of the surface enhanced raman scattering (SERS) of bacteria

The surface enhanced Raman scattering (SERS) of a number of species and strains of bacteria obtained on novel gold nanoparticle (approximately 80 nm) covered SiO(2) substrates excited at 785 nm is reported. Raman cross-section enhancements of >10(4) per bacterium are found for both Gram-positive and Gram-negative bacteria on these SERS active substrates. The SERS spectra of bacteria are spectrally less congested and exhibit greater species differentiation than their corresponding non-SERS (bulk) Raman spectra at this excitation wavelength. Fluorescence observed in the bulk Raman emission of Bacillus species is not apparent in the corresponding SERS spectra. Despite the field enhancement effects arising from the nanostructured metal surface, this fluorescence component appears "quenched" due to an energy transfer process which does not diminish the Raman emission. The surface enhancement effect allows the observation of Raman spectra of single bacterial cells excited at low incident powers and short data acquisition times. SERS spectra of B. anthracis Sterne illustrate this single cell level capability. Comparison with previous SERS studies reveals how the SERS vibrational signatures are strongly dependent on the morphology and nature of the SERS active substrates. The potential of SERS for detection and identification of bacterial pathogens with species and strain specificity on these gold particle covered glassy substrates is demonstrated by these results.     

Porous GaN as a template to produce surface-enhanced Raman scattering-active surfaces

Surface-enhanced Raman spectroscopy (SERS) substrates have been prepared by depositing Au or Ag on porous GaN (PGaN). The PGaN used as the template for the metal deposition in these studies was generated by a Pt-assisted electroless etching technique. PGaN was chosen as a potential SERS template due to its nanostructured surface and high surface area, two characteristics that are important for SERS substrates. Metal films were deposited either by solution-based electroless deposition or by thermal vacuum evaporation. SERS spectra were recorded at lambda = 752.5 nm for Au films and at lambda = 514.5 nm for Ag films deposited on PGaN. The SERS signal strength across the metal coated PGaN substrates was uniform and was not plagued by "hot" or "cold" spots on the surface, a common problem with other SERS surfaces. The Ag film deposited by electroless deposition had the highest overall SERS response, with an enhancement factor (EF) relative to normal Raman spectroscopy of 10(8). A portion of the increase in EF relative to typical SERS-active substrates can be assigned to the large surface area characteristic of the PGaN-Ag structures, but some of the enhancement is intrinsic and is likely related to the specific morphology of the metal-nanopore composite structure.     

A new surface-enhanced Raman scattering system for carbon nanotubes

A new surface-enhanced Raman scattering (SERS) system of carbon nanotubes (CNTs) is reported for the first time. According to the remarkable mechanical property, CNTs were grinded on a sheet of silver directly. Thus rough silver surface was obtained, at the same time, the CNTs attached to the rough silver surface. High quality SERS spectra were obtained from CNTs attached to the rough silver surface. Because there were no solvents affecting the SERS of CNTs, the dependability of the result is improved. The theory and experiment results indicate that this is an accurate and practicable method for SERS study of CNTs.     

Optimization of the preparation of glass-coated, dye-tagged metal nanoparticles as SERS substrates

Dye-tagged metal nanoparticles are of significant interest in SERS-based sensitive detection applications. Coating these particles in glass results in an inert spectral tag that can be used in applications such as flow cytometry with significant multiplexing potential. Maximizing the SERS signal obtainable from these particles requires care in partitioning available nanoparticle surface area (binding sites) between the SERS dyes and the functionalized silanes necessary for anchoring the glass coating. In this article, we use the metal-mediated fluorescence quenching of SERS dyes to measure surface areas occupied by both dyes and silanes and thus examine SERS intensities as a function of both dye and silane loading. Notably, we find that increased surface occupation by silane increases the aggregative power of added dye but that decreasing the silane coverage allows a greater surface concentration of dye. Both effects increase the SERS intensity, but obtaining the optimum SERS intensity will require balancing aggregation against surface dye concentration.     

Probing nanoscale interfaces with electrochemical surface-enhanced Raman scattering

Surface-enhanced Raman scattering (SERS) is a powerful tool for studying nanoscale molecule-metal interfaces across a range of electrochemical applications. SERS combines molecular-level information with a high degree of surface specificity, making it an ideal tool for understanding interfacial processes, from understanding how analytes and electrolytes organize near metal surfaces to following surface-mediated reactions in real time. However, because SERS relies on the excitation of localized surface plasmons, additional effects such as the production of hot charge carriers and photothermal heating can impact electrochemical SERS signals. These effects must also be considered when using SERS for quantitative electrochemical studies.     

Correlation of molecular orientation and packing density in a dsDNA self-assembled monolayer observable with surface-enhanced Raman spectroscopy

Observations of two spectrally distinct ring breathing modes of guanine and adenine in the surface-enhanced Raman spectrum (SERS) of a dsDNA self-assembled monolayer on an Au nanoshell SERS substrate provide information concerning the orientation of its constituent molecules. The two modes vary with DNA concentration in a highly systematic manner, consistent with studies suggesting DNA molecules tend toward a more horizontal orientation at low-surface concentrations and a more vertical conformation at high concentrations. The introduction of small molecular spacers coadsorbed onto the Au nanoshell surface to "raise" the DNA molecules yields a SERS spectrum consistent with a more upright molecular orientation.     

Metal-molecule Schottky junction effects in surface enhanced Raman scattering

We propose a complementary interpretation of the mechanism responsible for the strong enhancement observed in surface enhanced raman scattering (SERS). The effect of a strong static local electric field due to the Schottky barrier at the metal-molecule junction on SERS is systematically investigated. The study provides a viable explanation to the low repeatability of SERS experiments as well as the Raman peak shifts as observed in SERS and raw Raman spectra. It was found that a strong electrostatic built-in field at the metal-molecule junction along specific orientations can result in 2-4 more orders of enhancement in SERS.     

Probing the protein orientation on charged self-assembled monolayers on gold nanohole arrays by SERS

In this work, surface-enhanced Raman scattering (SERS) was applied to probe the orientation of cytochrome c (Cyt-c) on gold nanohole arrays functionalized with self-assembled monolayers (SAMs) of alkane thiols with positively (-NH2) and negatively (-COOH) charged terminal groups. Square grid gold nanohole arrays with a nanohole diameter of 270 nm and a grating of 350 nm were fabricated by electron beam lithography (EBL) and were used as the SERS substrates. The SERS intensities of the nontotally symmetric mode (B(1g) mode nu(11)) and the totally symmetric mode (A(1g) mode nu(4)) and their ratios were used to determine the orientation of Cyt-c on surfaces. The results indicate that the heme group is close and perpendicular to the negatively charged surface but is far from and oriented at an angle to the positively charged surface. Cyt-c has a random or more flat orientation on the bare Au nanoholes surface.