用MM2力场模拟手性金属配合物[Co（phen）2dppz）]^3＋的新方法

配位键并非典型价键,所以在模拟金属配合物时若模拟方法和参数选取不当,将会导致不能成键或构型发散。本文将探讨一种能在微机上用分子力学模拟手性金属配合物的新方法,该方法以CsChem3D中MM2为支持力场,通过搭建和优化配合物△,∧[Co(phen)2dppz)]^3＋获得其几何构型,并将其构型特征量与文献值或验值进行比较以确定该方法的可靠性。     

双环金属铱(Ⅲ)异腈配合物的二阶非线性光学性质

采用密度泛函理论(DFT)方法对双环金属Ir(III)异腈配合物的非线性光学(NLO)性质进行计算研究。用B3PW91(UB3PW91)(金属原子采用LANL2DZ基组,非金属原子采用6-31G*基组)方法对配合物进行几何结构优化。在优化构型基础上,采用B3PW91(UB3PW91)和B3LYP(UB3LYP)方法计算了配合物的第一超极化率(βtot),并用CAM-B3LYP(UCAM-B3LYP)(金属原子采用LANL2DZ基组,非金属原子采用6-31G**基组)方法模拟配合物的吸收光谱。结果表明,主配体的取代基(R1)和副配体的取代基(R2)对第一超极化率值贡献不大。配合物发生氧化还原反应,电荷转移方式增多,电荷转移程度增大,使βtot值显著增加,其中1a+([(C∧N)2Ir(CNR)2]+(R=CH3))发生氧化反应和还原反应的βtot值分别增大了75倍和144倍。因此,这类双环金属铱(III)异腈配合物的氧化还原反应可以有效地调节其二阶NLO性质。     

△,Λ-[Co(phen)2tpphz]3+与B-DNA相互作用的分子模拟

针对国际上对金属配合物同DNA间作用机量的争议,采用分子模拟手段在MM2力场下,搭建并优化了手性金属配合物△,Λ-[Co(phen)2tpphz]^3+与B-DNA[d(GTCGATCGAC)2]的模型,继而对其相互作用进行了模拟,得出的结论是：对所采用的B-DNA片断,该金属配合物有明显的立体选择性△型配合物从小沟插入占明显优势,而且,总体来看,从AT区插入更易进行。     

手性三菲咯啉合镍与DNA的立体选择性研究

有关 DNA与金属配合物反应机理和作用模式的探讨是生物无机化学研究的重要内容之一 .目前的研究 [1～ 4] 表明 ,有大共轭配体配位的八面体金属配合物以静电作用或插入方式与DNA结合 .外消旋 [Ni( phen) 3]2 +及其旋光异构体与 DNA作用机理的研究曾有报道 [4] .但用电化学方法研究其旋光异构体与 DNA作用则未见详细报道 .本文用电化学方法和 CD谱研究了 Δ- ,∧ - [Ni( phen) 3]2 +配合物与 DNA的作用 .两种方法所得结果均表明 Δ- ,∧ - [Ni( phen) 3]2 +与 DNA作用时 ,Δ构型配合物的插入作用比∧构型配合物的强 .该法与平衡透析…     

△,Λ-[Co(phen)2tpphz]^3+与B - DNA相互作用的分子 模拟

针对国际上对金属配合物同DNA间作用机量的争议,采用分子模拟手段在MM2力场下,搭建并优化了手性金属配合物△,Λ-[Co(phen)2tpphz]^3+与B-DNA[d(GTCGATCGAC)2]的模型,继而对其相互作用进行了模拟,得出的结论是：对所采用的B-DNA片断,该金属配合物有明显的立体选择性△型配合物从小沟插入占明显优势,而且,总体来看,从AT区插入更易进行。     

配合物[M(CO)3(PPh2py)2](M=Fe,Ru)异构体的理论研究

对PPh2py配合物[M(CO)3(PPh2py)2](M=Fe, Ru)的三种构型的异构体1-6进行了研究. 其中PPh2py以两个P原子与M配位形成HH构型1(Fe)和4(Ru), 以一个P和一个N原子与M配位形成HT构型2(Fe)和5(Ru), 以两个N原子与M配位形成HH’构型3(Fe)和6(Ru). 结果表明, (1) PPh2py中P原子对HOMO轨道的贡献最大, PPh2py作为电子给体时易以P原子与金属原子结合. (2)从分子能量和相互作用能数据表明, 配合物中HH构型最稳定, HH'构型最不稳定, 这与合成产物为HH构型的结果一致. (3) 键长和Wiberg键级均表明P—M键比N—M键结合力强. P、M原子间存在σ键, 而N、Fe原子间仅存在nN→n*M或nN→σ*M-P的电荷转移作用. (4) HH构型中M对HOMO的贡献最大, PPh2py向M的电荷转移最强, 使M的负电荷最大, 故HH构型最易作为电子给体以M原子与第二个金属配位形成双核配合物.     

水合乙酰丙酮镧系金属配合物的低频红外光谱及其结构

根据450～180cm~(-1)范围的红外光谱可容易地将二水(或三水)乙酰丙酮镧系金属配合物与单水配合物区分开来.这个范围内的有些谱带的频率随镧系金属原子序数的递增而稍有升高,说明这些谱带起源于M-O键的伸缩振动.用群论方法对不同构型的配合物计算了局部结构MO_8和MO_7应有的具红外活性的M-O伸缩振动形式数,并将其与三水(或二水)及单水配合物在此范围的谱带相比较.从而推断八配位的三水(或二水)配合物的配位多面体可能取正十二面体构型,而大多数七配位的单水配合物可能取单帽三棱柱构型。     

三价铬丙二酸配合物[Cr(C_3H_2O_4)(H_2O)_4][Cr(C_3H_2O_4)_2(H_2O)_2]·4H_2O的合成、晶体结构及性质研究

在三重桥氧三核铬羧酸配合物的系列研究中,采用与铬的一元羧酸配合物类似的实验条件,以丙二酸为配体合成了不同构型的配合物[Cr(C_3H_2O_4)(H_2O)_4)][Cr(C_3H_2O_4)_2(H_2O)_2]·4H_2O,通过X射线衍射测定了其单晶结构,并对-COO的配位方式作了讨论,还研究了配合物的红外光谱、拉曼光谱、紫外可见光谱、质谱、磁化率等性质,探讨了性质与结构的关系,并由此论证了二元羧酸和铬形成的双齿螯合构型化合物的稳定性.     

[NiCl(Ph_2PCH_2CH_2OH)_2Cl·H_2O]~+Cl~-和[Ni(Ph_2P(O)CH_2CH_2OH)_4]~(2+)[NiCl_4]~(2-)的合成及晶体结构

通过NiCl2·6H2O与双齿配体2-(二苯基膦)乙醇(Ph2PCH2CH2OH)或其氧化物2-(二苯基氧膦)乙醇[Ph2P(O)CH2CH2OH]的反应,制得两种结构新颖的阳离子型镍配合物[NiCl(Ph2PCH2CH2OH)2 (H2O)]+Cl-(1)和[Ni(Ph2P(O)CH2CH2OH)4]2+[NiCl4]2-(2).通过元素分析、31P核磁共振及X射线单晶衍射对配合物1和2的结构进行了表征.配合物1的晶体属单斜晶系,C2/c空间群,中心金属Ni具有六配位八面体几何构型.配合物2属四方晶系,I4(1)/a空间群,中心原子Ni与PO基团中的O配位形成平面四边形构型.     

羰基镍簇Ni(CO)n(n=1-4)的结构和Ni-CO键解离性质的密度泛函理论研究

在密度泛函理论框架下, 应用不同泛函计算了配合物Ni(CO)n(n=1~4)的平衡几何构型和振动频率. 考察了泛函和基组重叠误差对预测Ni—CO键解离能的影响. 计算结果表明, 用杂化泛函能得到与实验一致的优化几何构型和较合理的振动频率. 对Ni(CO)n(n=2~4)体系, 用“纯”泛函, 如BP86和BPW91, 可得到与CCSD(T)更符合、 并与实验值接近的解离能. 当解离产物出现单个金属原子或离子(如金属羰基配合物的完全解离)时, BSSE校正项的计算中应保持金属部分的电子结构一致. 只有考虑配体基组和不考虑配体基组两种情况下金属的电子构型与配合物中金属的构型一致时, 才能得到合理的BSSE校正, 从而预测合理的解离能.     

C2型轴对称手性双噁唑啉的合成及其应用研究

本文综述了手性双恶唑啉的合成及其金属配合物作为手性催化剂在催化不对称反应中的应用研究进展。     

大环手性磷酰胺对氨基酸衍生物的分子识别研究

以(S)-α-甲基苯乙胺和天然氨基酸(L-丙氨酸、L-苯甘氨酸及L-苯丙氨酸)为手性源,以2,5-二(邻羟基苯基)-1,3,4- 二唑和2,4-二(邻羟基苯基)-1,3,5- 二唑为刚性单元,合成了一系列具有光学活性的新型含 二唑磷酰胺和磷酯手性大环化合物.用NMR,IR和FABMS方法研究了所合成的手性大环对氨基酸甲酯盐酸盐和二肽的分子间相互作用和分子识别.结果表明,这些主体对D-或L-氨基酸甲酯盐酸盐和二肽具有选择性的结合作用.     

DFT-UX3LYP studies on the coordination chemistry of Ni2+. Part 1: Six coordinate [Ni(NH3)n(H2O)(6-n)]2+ complexes

DFT calculations with the UX3LYP hybrid functional and a medium-sized 6-311++G(d,p) basis set were performed to examine the gas-phase structure of paramagnetic (S = 1) six-coordinate complexes [Ni(NH3)n(H2O)(6-n)](2+), 0 < or = n < or = 6. Significant interligand hydrogen bonding was found in [Ni(H2O)6](2+), but this becomes much less significant as NH3 replaces H2O in the coordination sphere of the metal. Bond angles and bond lengths obtained from these calculations compare reasonably well with available crystallographic data. The mean calculated Ni-O bond length in [Ni(H2O)6](2+) is 2.093 A, which is 0.038 A longer than the mean of the crystallographically observed values (2.056(22) A, 108 structures) but within 2sigma of the experimental values. The mean calculated Ni-N bond length in [Ni(NH3)6](2+) is 2.205(3) A, also longer (by 0.070 A) than the crystallographically observed mean (2.135(18) A, 7 structures). Valence bond angles are reproduced within 1 degree. The successive replacement of H2O by NH3 as ligands results in an increase in the stabilization energy by 7 +/- 2 kcal mol(-1) per additional NH3 ligand. The experimentally observed increase in the lability of H2O in Ni(II) as NH3 replaces H2O in the coordination sphere is explained by an increase in the Ni-OH2 bond length. It was found from a natural population analysis that complexes with the highest stabilization energies are associated with the greatest extent of ligand-to-metal charge transfer, and the transferred electron density is largely accommodated in the metal 4s and 3d orbitals. An examination of the charge density rho bcp and the Laplacian of the charge density nabla(2)rho(bcp) at the metal-ligand bond critical points (bcp) in the series show a linear correlation with the charge transferred to the metal. Values of nabla(2)rho(bcp) are positive, indicative of a predominantly closed-shell interaction. The charge transferred to the metal increases as n, the number of NH3 ligands in the complex, increases. This lowers the polarizing ability of the metal on the ligand donors and the average metal-ligand bond length increases, resulting in a direct correlation between the dissociation energy of the complexes and the reciprocal of the average metal-ligand bond length. There is a strong correlation between the charge transferred to the metal and experimental DeltaH values for successive replacement of H2O by NH3, but a correlation with stability constants (log beta values) breaks when n = 5 and 6, probably because of entropic effects in solution. Nevertheless, DFT calculations may be a useful way of estimating the stability constants of metal-ligand systems.     

超离子导体CaF2中的Ca2+亚晶格和F-亚晶格

CaF_2在熔化以前为超离子导体相。一些实验和理论的研究表明,在超离子导体相中,Ca~(2+)仍维持原有的面心立方骨架,而F~-则在Ca~(2+)骨架中运动。早期的分子动力学模拟结果表明Ca~(2+)的均方根位移仅约0.3A,而F~-的扩散系数可达2.6×10~(-5)cm·s~(-1),已是熔盐扩散系数量级。近年来的中子散射实验表明在扩散离子和近邻离子间存在着某种动力学相关。为解释这些事实,新近Gillan的分子动力学模拟表明扩散离子伴随着F~-亚晶格变形,而Kaneko和Ueda的分子动力学模拟则表明扩散离子伴随着近邻离子在同一运动方向的相关运动。进一步的研究尚待进行。八十年代初,Nelson等人提出了描述晶体、非晶和液态中键取向的键球谐函数方法。     

Control of chiral ordering in aggregated poly[3-(S)-[2-methylbutyl]thiophene] by a doping-dedoping process

The chiral ordering in aggregated poly(3-alkylthiophene) can be controlled by a metal salt-dependent doping-dedoping process. Enhancement or reduction in the chiral anisotropy factor depends on the doping level, such that doping driven by polymer-metal salt interactions, and dedoping driven by aggregate formation must be balanced in order to achieve maximal chiral ordering. This phenomenon provides a new basis to control chiral arrangement in conjugated polymer aggregates, relying solely on doping, and thus avoiding tedious modification of side-chain or main-chain structures.     

An investigation of methods for the application of molecular mechanics to lanthanide complexes

Methods are described for molecular mechanics calculations on lanthanide complexes. The irregularity of the coordination spheres of these metals necessitate special treatment in a molecular mechanics force field. Three different methods for treating the metal coordination sphere in the complexes are evaluated. In the first method, we include bond stretch terms between metal and donor atoms and 1,3 interactions between donor atoms. The second method utilizes a nonbonded potential between metal atoms and donor atoms to determine the geometry of the coordination sphere, and the third method involves coulombic interactions as well as a nonbonded potential to describe the van der Waals interactions. Evaluations of the three methods have been carried out by calculating the r.m.s. deviations between experimental structures and minimized structures. Results indicate that it is possible to achieve good agreement by all three methods, but that the second method provides the most consistent results, as well as being relatively straightforward to paramaterize.     

Chiral nonracemic late-transition-metal organometallics with a metal-bonded stereogenic carbon atom: development of new tools for asymmetric organic synthesis

Transition-metal-catalyzed cross-coupling reactions and the Heck reaction have evolved into powerful tools for the construction of carbon-carbon bonds. In most cases, the reactive organometallic intermediates feature a carbon-transition-metal sigma bond between a sp(2)-hybridized carbon atom and the transition metal (Csp(2)--TM). New, and potentially more powerful approach to transition-metal-catalyzed asymmetric organic synthesis would arise if catalytic chiral nonracemic organometallic intermediates with a stereogenic sp(3)-hybridized carbon atoms directly bonded to the transition metal (C*sp(3)--TM bond) could be formed from racemic or achiral organic substrates, and subsequently participate in the formation of a new carbon-carbon bond (C*sp(3)-C) with retention of the stereochemical information. To date, only a few catalytic processes that are based on this concept, have been developed. In this account, both "classical" and recent studies on preparation and reactivity of stable chiral nonracemic organometallics with a metal-bonded stereogenic carbon, which provide the foundation for the future design of new synthetic transformations exploiting the outlined concept, are discussed, along with examples of relevant catalytic processes.     

Comparative parametric method 5 (PM5) study of trans-stilbene

In this work we report a comparative Austin method 1 (AM1), parametric method 3 (PM3), and parametric method 5 (PM5) studies for trans-stilbene in its ground, excited (singlet and triplet), and ionic (positive and negative polarons and bipolarons) states. We evaluated the accuracy of the recently developed PM5 method. PM5 and AM1 predict a non-planar ground and singlet states for trans-stilbene, while PM3 predicts planar ones, which is in agreement with the available experimental data. In general the PM3 and PM5 bond lengths are superior to AM1 while AM1 bond angles are superior to PM3 and PM5 when compared with available experimental data. The PM5 underestimates the cis–trans isomerization energy and and it is not a quite reliable method for the calculation of relative IP values. The presumed PM5 superior performance against AM1 and PM3 was not observed for the stilbene structures.     

Synthesis,Coordination Chemistry and Bonding of Strong N‐Donor Ligands Incorporating the 1H‐Pyridin‐(2E)‐Ylidene (PYE) Motif

A range of N‐donor ligands based on the 1H‐pyridin‐(2E)‐ylidene (PYE) motif have been prepared, including achiral and chiral examples. The ligands incorporate one to three PYE groups that coordinate to a metal through the exocyclic nitrogen atom of each PYE moiety, and the resulting metal complexes have been characterised by methods including single‐crystal X‐ray diffraction and NMR spectroscopy to examine metal–ligand bonding and ligand dynamics. Upon coordination of a PYE ligand to a proton or metal‐complex fragment, the solid‐state structures, NMR spectroscopy and DFT studies indicate that charge redistribution occurs within the PYE heterocyclic ring to give a contribution from a pyridinium–amido‐type resonance structure. Additional IR spectroscopy and computational studies suggest that PYE ligands are strong donor ligands. NMR spectroscopy shows that for metal complexes there is restricted motion about the exocyclic C? N bond, which projects the heterocyclic N‐substituent in the vicinity of the metal atom causing restricted motion in chelating‐ligand derivatives. Solid‐state structures and DFT calculations also show significant steric congestion and secondary metal–ligand interactions between the metal and ligand C? H bonds.