激发态下甘氨酸与水分子间氢键性质研究

在生物体中氨基酸通常以水作为溶剂,是形成细胞的重要成分.在该环境下,分子间氢键的产生会对氨基酸分子与水分子的结构和性质产生影响.为了研究其在基态和激发态下的性质,本文利用密度泛函理论(DFT)和含时密度泛函理论(TD-DFT)对甘氨酸分子和H₂O分子在基态和激发态下的分子间氢键的静电势、键长、自然键轨道(NBO)电荷、分子中的原子理论(AIM)分析、Wiberg键级b、红外(IR)光谱、空穴-电子轨道和基态与激发态之间的电子转移进行了理论研究.结果表明：分子间氢键的形成会导致分子结构的改变和红外光谱振动频率的移动.在激发态下,分子间氢键有不同程度的增强或减弱.该计算结果为氢键的形成和激发态下分子间氢键的研究提供理论依据.     

幻数尺寸Li-n-1,Lin,Li+ n+1(n=20,40)团簇的几何结构、电子与光学性质的第一性原理研究

基于密度泛函理论,采用第一性原理分子动力学模拟退火方法,对Li^-_n-1,Li_n,Li⁺_n+1 (n=20,40)的最低能量结构进行了全局搜索. 发现锂团簇的生长模式是以单个或多个嵌套的正多面体为核心,其余原子以五角锥为基本单元围绕核心生长. 基于最低能量结构的第一性原理电子结构计算得到锂团簇的分子轨道能级分布与无结构凝胶模型给出的电子壳层完全一致. 在总电 关键词： 团簇 电子结构 极化率 光吸收     

AlnCum (n=2-6, m=1-3)团簇的几何与电子结构

本文利用密度泛函理论研究了Al_nCu_m(n=2-6,m=1-3)团簇的几何结构、稳定性和电子结构.结合能、解离能以及最高占据轨道(HOMO)和最低未占据轨道(LUMO)之间的能隙的分析表明8和20价电子的Al₂Cu₂和Al₆Cu₂团簇具有较强的稳定性.通过对团簇的分子轨道和能级结构进行分析,结果表明8和20价电子的Al₂Cu₂和Al₆Cu₂团簇的分子轨道与凝胶模型预测的一致,可构成闭合壳层,表现出特别的稳定性.Cu原子定域的3d轨道位于团簇的分子轨道之间,但并未影响团簇分子轨道的分布.     

外电场作用下二氧化硅分子的光激发特性研究

采用密度泛函B3P86和组态相互作用方法在6-311G**基组水平上计算了二氧化硅分子从基态到前5个激发态的跃迁波长、振子强度、自发辐射系数A_n0和吸收系数B_0n（n=1—5）.研究了外电场对二氧化硅分子激发态的影响规律. 结果表明,随外电场强度增大,最高占据轨道与最低空轨道能隙变小,占据轨道的电子易于激发至空轨道. 因而在外场作用下分子易于激发. 关键词： 2')" href="#">SiO₂ 激发态 外电场     

AlxOy(x=1—2,y=1—3)分子几何结构与稳定性的DFT研究

用密度泛函理论(DFT)的B31yp方法在6-311++g^水平上对Al_xO_y(x=1—2,y=2—3)分子的几何构型、电子结构、振动频率等性质进行了理论研究. 通过对基态结构的几何参数分析发现，它们的基态结构趋于直线或平面结构. 对基态结构的绝热电离能讨论表明，金属铝原子数一定时，氧原子数从1增加到3，其气态分子越来越稳定，铝原子数少的分子体系更稳定. 系统给出了该系列分子基态的几何参数、电子结构、光谱性质. Al₂O₃的C_2V三重态是该分子的能量最低结构. 关键词： xO_y分子')" href="#">Al_xO_y分子 密度泛函理论 结构与稳定性     

外电场作用下ZnO分子的结构特性研究

本文以6-311++g(d,p)为基组, 采用密度泛函理论的B3P86方法优化得到了ZnO分子的基态稳定构型, 并计算了不同外电场(-0.05–0.05a.u.)下ZnO基态分子的稳定电子结构, 研究外电场对ZnO基态分子键长、总能量、电荷分布、能级分布、能隙及红外光谱的影响. 结果表明: 外加电场的大小和方向对分子结构和电子特性均有明显影响. 随着正向外加电场的增加, ZnO基态分子的平衡键长先减小后增加, 而分子总能量、振动频率和红外光谱的强度均先增加后减小. 分子的最高占据轨道能量E_H、最低未占据轨道能量E_L和能隙E_g始终处于减小趋势, 因而占据轨道的电子更容易被激发至空轨道. 这一结果可为ZnO分子的电致发光机理研究提供一定的理论参考. 关键词： ZnO 外电场 结构参数 激发     

Ag(110)表面吸附酞菁铜分子的紫外光电子谱研究

用紫外光电子能谱(UPS)研究了酞菁铜分子在Ag(110)单晶表面上的吸附,随着酞菁铜分子覆盖度增加,衬底Ag的3d电子信号逐渐减弱,在此能带区域出现两个新的谱峰,这两个与吸附有机分子轨道有关的谱峰的束缚能分别为4.45 和6.36 eV.随着覆盖度的增加,在结合能为1.51和9.20 eV处又出现了两个谱峰,它们同样来自吸附有机分子的轨道.随着覆盖度的继续增加,上述四个谱峰的强度逐渐增加,其能量位置均发生了明显的偏移.根据角分辨光电子能谱的实验结果,酞菁铜分子的分子平面基本与衬底表面平行.密度泛函理论计 关键词： 酞菁铜 紫外光电子谱 吸附电子态 密度泛函理论     

外电场下二氧化硫的分子结构及其特性

以6-311++g(3d, p)为基组, 采用B3P86方法研究了不同外电场(-0.04-0.04 a.u.)对SO₂分子基态的几何参数、电荷分布、能量、电偶极距、最高占据轨道(HOMO)能级、最低占据轨道(LUMO)能级及能隙的影响, 在优化构型的基础上, 采用含时密度泛函(TD-B3P86)方法研究了SO₂分子在外电场作用下前9个激发态的激发能、跃迁波长和振子强度. 研究表明: SO₂的几何参数与电场强度大小及方向均有明显的依赖关系. 电场由-0.04 a.u. 变化至0.04 a.u.时, 体系的总能量先增加后减小; 偶极矩先减小后增加; HOMO能级一直减小; LUMO能级先增加后减小; 能隙先增加后减小. 激发态的激发能、跃迁波长和振子强度与电场关联均较为复杂, 说明SO₂的激发特性易受外电场影响.     

分子结点电子输运性质的理论研究

采用基于密度泛函理论的非平衡态格林函数方法,研究了Pt-H₂微结点在平衡态和低偏压下的电子输运行为,考察了电极-分子耦合形貌对结点输运性质的影响,并采用费曼路径概念从结点局域轨道出发分析了其输运特性. 发现H₂分子的反键轨道可以参与结点的低偏压电子输运,偏压可以通过改变系统局域分子轨道来影响其输运性质. 关键词： 分子结点 电子输运 非平衡态格林函数方法 透射谱     

强外电场作用下BN分子的结构与激发特性

采用密度泛函理论的B3LYP方法在6-311++g(d.p)水平上优化得到了BN分子轴向加不同外电场时的基态结构参数,包括键长、电偶极矩、电荷分布、前线轨道、红外光谱.计算结果表明,随着正向电场增加,分子结构参数与外电场强度有明显关联,并呈现不对称性.另外,在同样的基组下利用合时密度泛函理论方法研究了外电场对BN分子激发能和振子强度的影响.结果表明,电子跃迁光谱随正向电压的增加而呈现蓝移现象,但振子的强度与电场关联较为复杂,说明光谱强度易受外电场影响.     

二苯二硫和二苄二硫润滑性能的量子化学研究

用Gaussian03W程序在B3LYP/631G和HF/631G水平上对二苯二硫(DPDS)和二苄二硫(DBDS)的分子几何构型、电子结构、分子轨道指数及与铁原子簇的相互作用等进行了理论计算.用前线分子轨道理论分析了反应的活性原子和活性键,讨论了DPDS和DBDS与铁原子的作用方式,用前线电子密度,超离域性指数,原子净电荷及化合物与铁原子簇的化学吸附作用能等参数作为判据分析了DPDS和DBDS与铁原子间键合的强弱,反应性的大小.计算结果表明DPDS和DBDS与铁接触时,趋向于S-S键与C-S键断裂,在较为缓和的摩擦条件下,DPDS的抗磨作用优于DBDS,在较为苛刻的摩擦条件下,DBDS的极压作用优于DPDS,与摩擦学试验结果一致.     

Influence of intramolecular hydrogen bond formation sites on fluorescence mechanism

The fluorescence mechanism of HBT-HBZ is investigated in this work. A fluorescent probe is used to detect HClO content in living cells and tap water, and its structure after oxidation by HClO (HBT-ClO) is discussed based on the density functional theory (DFT) and time-dependent density functional theory (TDDFT). At the same time, the influence of the probe conformation and the proton transfer site within the excited state molecule on the fluorescence mechanism are revealed. Combined with infrared vibrational spectra and atoms-in-molecules theory, the strength of intramolecular hydrogen bonds in HBT-HBZ and HBT-ClO and their isomers are demonstrated qualitatively. The relationship between the strength of intramolecular hydrogen bonds and dipole moments is discussed. The potential energy curves demonstrate the feasibility of intramolecular proton transfer. The weak fluorescence phenomenon of HBT-HBZ in solution is quantitatively explained by analyzing the frontier molecular orbital and hole electron caused by charge separation. Moreover, when strong cyan fluorescence occurs in solution, the corresponding molecular structure should be HBT-ClO(T). The influence of the intramolecular hydrogen bond formation site on the molecule as a whole is also investigated by electrostatic potential analysis.     

Vibrational and electronic spectral analysis of 2,3-pyrazinedicarboxylic acid: A combined experimental and theoretical study

Fourier transform infrared and Raman spectra of 2,3-pyrazinedicarboxylic acid were recorded and analyzed using density functional theory. The complete assignments of the anharmonic vibrational modes have been performed based on potential energy distribution. The anharmonic frequencies were computed using vibrational second-order perturbation theory as well as vibrational self-consistent field and correlation corrected vibrational self-consistent field methods. Mode–mode coupling strength is also estimated using two-mode representation of quartic force field approximation. The intra- and intermolecular interactions were also studied in the dimer and trimer forms of the title molecule. The ultraviolet–visible absorption spectra in ethanol, methanol, and acetonitrile solvents were recorded and analyzed using time-dependent density functional theory involving the polarization continuum model. The observed and calculated results are well comparable. Molecular electrostatic potential and the highest occupied and the lowest unoccupied molecular orbital analyses are also reported.     

溶剂对镍连二硫烯与乙烯反应的影响

用密度泛函理论在B3LYP/6-31G(d)水平上计算得到了镍连二硫烯与乙烯反应的势能面上各驻点(反应物、中间体、产物和两个过渡态)的分子几何构型、电荷分布和一些热力学参数等,研究了溶剂对镍连二硫烯与乙烯反应的影响.结果发现,随着溶剂极性的增强,乙烯和镍连二硫烯之间的成键作用增强,两个过渡态的前线轨道能量差增大,而产物和中间体的前线轨道能量差却减小,同时各驻点的溶剂稳定化能也减小.进一步,这表明溶剂极性增强能提高产物的稳定性,有利于反应的进行.此外,当溶剂相对介电常数1.00≤ε≤7.58时 关键词： 镍连二硫烯 乙烯 溶剂效应 密度泛函理论     

溶剂对镍连二硫烯与乙烯反应的影响

用密度泛函理论在B3LYP/6-31G(d)水平上计算得到了镍连二硫烯与乙烯反应的势能面上各驻点(反应物、中间体、产物和两个过渡态)的分子几何构型、电荷分布和一些热力学参数等，研究了溶剂对镍连二硫烯与乙烯反应的影响.结果发现，随着溶剂极性的增强，乙烯和镍连二硫烯之间的成键作用增强，两个过渡态的前线轨道能量差增大，而产物和中间体的前线轨道能量差却减小，同时各驻点的溶剂稳定化能也减小.进一步，这表明溶剂极性增强能提高产物的稳定性，有利于反应的进行.此外，当溶剂相对介电常数1.00≤ε≤7.58时     

PBT与固化剂的反应机理研究

本文采用密度泛函理论(DFT)研究了粘合剂端羟基3,3-双叠氮甲基氧杂环丁烷-四氢呋喃(BAMO-THF)共聚醚(PBT)和固化剂甲苯二异氰酸酯(TDI)模型化合物的结构性质.对粘合剂PBT和固化剂TDI进行了结构优化,通过计算与分析静电势能图,探究了固化反应可能的反应位点.PBT与TDI反应位点较多,易于形成网络结构.基于模型化合物,预测了四种可能的固化反应产物,计算了固化反应可能产物的结构和能量.确定了固化反应过程中热力学稳定结构,并对最可几的产物反应路径中的过渡态进行了计算,得到了最可能的固化反应的反应路径和活化自由能.该研究可为进一步分析PBT推进剂中涉及的老化反应提供依据.     

Theoretical study on the mechanism of thieno[3,2‐b]benzofuran bromination: the importance of Lewis and non‐Lewis type NBOs interactions along the reaction path

A density functional theory study has been performed to estimate the electrophilic thieno[3,2‐b]benzofuran bromination reaction. Optimized structures for all stationary points were examined by employing the B3LYP and BMK at the 6‐31++G(d,p), 6‐311G(d,p), and 6‐311++G(d,p) levels of theory. The solvent polarity has a significant effect on a reduction of activation energies barriers. The reaction involves the formation of a triangle complex, migration of a proton through the bromine moiety followed by ionization of the bromine bond, and activation to the σ‐complex. Finally, the σ‐complex transforms into the reaction products. The natural bond orbital (NBO) population analysis was performed along the reaction minimal energy path defined as a function of the intrinsic reaction coordinate (IRC). The evolution of interaction energies between filled and empty NBOs along IRC has been estimated. The importance of these interactions for the disruption of Br?Br and C?H bonds and creation of C?Br and H?Br bonds have been emphasized. The changes in NBOs hybridization, covalency effects, electrostatic potential density maps, and occupancy of natural bonds have been investigated along IRC. The results obtained explain well the essence of bonding transformations and electron density changes during the reaction. Copyright © 2015 John Wiley & Sons, Ltd.     

BEHAVIOR OF Ar PLASMA FORMED IN A HIGH DENSITY PLASMA SOURCE-AN ECR REACTOR

In order to develop the ultra-large scale integration(ULSI), low pressure and high density plasma apparatus are required for etching and deposit of thin films. To understand critical parameters such as the pressure, temperature, electrostatic potential and energy distribution of ions impacting on the wafer, it is necessary to understand how these parameters are influenced by the power input and neutral gas pressure. In the present work, a 2-D hybrid electron fluid-particle ion model has been developed to simulate one of the high density plasma sources-an Electron Cyclotron Resonance (ECR) plasma system with various pressures and power inputs in a non-uniform magnetic field. By means of numerical simulation, the energy distributions of argon ion impacting on the wafer are obtained and the plasma density, electron temperature and plasma electrostatic potential are plotted in 3-D. It is concluded that the plasma density depends mainly on both the power input and neutral gas pressure. However, the plasma potential and electron temperature can hardly be affected by the power input, they seem to be primarily dependent on the neutral gas pressure. The comparison shows that the simulation results are qualitatively in good agreement with the experiment measurements.     

3-氨基-5-巯基-1,2,4-三唑与Ag(I)配位作用的密度泛函理论研究

采用密度泛函理论B3LYP方法研究3-氨基-5-巯基-1,2,4-三唑与Ag(I)的配位特点.计算结果显示,ad-L配体配位能力显著高于中性配体L,其中SN配位模式稳定化能高于中性配体约443.8kJ/mol,且N2模式稳定化能高于中性配体约336.8 kJ/mol;而p-L配体相互作用能和稳定化能均为负值.自然键轨道(NBO)分析显示配体与Ag(I)间存在较强轨道作用.静电势分析发现,L配体最负静电势出现在N1、N2原子周围,因此N1、N2位点更易与Ag(I)配位; ad-L配体静电势为负,因此与Ag(I)作用增强,而质子化的配体p-L静电势为正,因此不易与Ag(I)配位.