Theoretical study of cooperativity between hydrogen bond‒hydrogen bond,halogen bond‒halogen bond and hydrogen bond‒halogen bond in ternary FX…diazine…XF (X = H and Cl) complexes

ABSTRACT

In the present work, the cooperativity between hydrogen bond?hydrogen bond, halogen bond?halogen bond and hydrogen bond?halogen bond in ternary FX…diazine…XF (X = H and Cl) complexes is theoretically investigated. The sign of cooperative energy (E_coop) obtained in all of the triads is positive which indicates that the ternary complex is less stable than the sum of the two isolated binary complexes. Moreover, our calculations show that E_coop value in triads increases as FX…pyridazine…XF > FX…pyrimidine…XF > FX…pyrazine…XF. In agreement with energetic, geometrical and topological properties, electrostatic potentials and coupling constants across ¹⁵N…X?¹⁹F (X = ¹H or ³⁵Cl) hydrogen and halogen bonds indicate that hydrogen and halogen bonds are weakened in the considered complexes where two hydrogen and halogen bonds coexist. As compared to N…H hydrogen bond, it is also observed that cooperativity has greater effect on N…Cl halogen bond.     

Symmetric bifurcated halogen bonds: substituent and cooperative effects

ABSTRACT

The aim of this study is to investigate the geometries, interaction energies and bonding properties of the symmetrical bifurcated halogen bond interactions (BXBs) by means of ab initio calculations. For this purpose, the NCX (X = Cl, Br) molecule is paired with a series of N-formyl formamide (NFF) derivatives (NFF-Z, Z = H, CN, CCH, OH, CH₃ and Li), and the properties of the resulting complexes are studied by molecular electrostatic potential, quantum theory of atoms in molecules, noncovalent interaction index and natural bond orbital analyses. For a fixed NCX molecule, interaction energies increase in the order of Z = Li > CH₃ > H > OH > CCH > CN. We found a strong correlation between the interaction energies of NCX:NFF-Z complexes and molecular electrostatic potential minimum values associated with NFF-Z monomers. Moreover, cooperative effects between BXB and X???N halogen bond interactions are studied in the ternary NCX:NCX:NFF-Z systems. Our results indicate that the strength of BXB interactions in the ternary complexes is enhanced by the presence of X???N bonds. Besides, cooperativity effects tend to increase the covalency of BXBs in these systems.     

Computational study of the cooperative effects between tetrel bond and halogen bond in XCN⋅⋅⋅F2CO⋅⋅⋅YCN complexes (X = H,F, Cl,Br; Y = F,Cl, Br)

ABSTRACT

Ab initio calculations have been accomplished to study the cooperativity between the halogen bond and tetrel bond in the XCN???F2CO???YCN (X = H, F, Cl, Br; Y = F, Cl, Br) complexes. F₂CO at the same time plays the role of Lewis acid with the π-hole on the C atom and Lewis base with the O atom to participate in the tetrel bond and in halogen bond, respectively. According to the geometry survey, the effect of a tetrel bond on a halogen bond is more pronounced than that of a halogen bond on a tetrel bond and the intermolecular distances in the triads are always smaller than the corresponding values in the dyads. In all cases, the halogen bond and tetrel bond in the termolecular complexes are stronger compared with those in the bimolecular complexes. So, from the intermolecular distances, interaction energies and many-body interactions demonstrate that there is positive cooperativity between the halogen bond and tetrel bond. The molecular electrostatic potential, atoms in molecules and natural bond orbital methodologies are used to analyse the nature of interactions of the complexes.     

Cooperativity effects between σ-hole interactions: a theoretical evidence for mutual influence between chalcogen bond and halogen bond interactions in F2S···NCX···NCY complexes (X = F,Cl, Br,I; Y = H,F, OH)

Quantum chemical calculations are performed to study the cooperativity effects between chalcogen bond and halogen bond interactions in F₂S···NCX···NCY complexes, where X = F, Cl, Br, I and Y = H, F, OH. These effects are investigated in terms of geometric and energetic features of the complexes, which are computed by second-order Møller–Plesset perturbation theory (MP2). For each F₂S···NCX···NCY complex studied, the effect of cooperativity on the chalcogen bond is dependent on the strength of halogen bond. The results indicate that the interaction energies of chalcogen and halogen bonds in the triads are more negative relative to the respective dyads. The interaction energy of chalcogen bond is increased by 31%–49%, whereas that of halogen bond by 28%–62%. The energy decomposition analysis reveals that electrostatic force plays a main role in the cooperativity effects between the chalcogen bond and halogen bond interactions. The topological analysis, based on the quantum theory of atoms in molecules, is used to characterise the interactions and analyse their enhancement with varying electron density at bond critical points.     

Effect of electron-donating and electron-withdrawing atoms on the C–H…Y hydrogen bond in model X3CH…YZ (X = B,F; YZ = BF,CO, N2) complexes

A computational study of model complexes X₃CH…YZ (X = B, F; YZ = BF, CO, N₂) was undertaken to assess the effect of electron-donating and electron-withdrawing X atoms on the properties of the C–H…Y hydrogen bond. Sequential substitution of the B atoms in B₃CH by F atoms to produce F₃CH allowed for the elucidation of interesting trends in the corresponding hydrogen-bonded complexes. The dipole moments and the dipole moment derivative with respect to C–H bond displacement for the proton donors and the chemical hardness of the Y atom of the proton acceptor YZ were found to be useful parameters for understanding these trends. It was found that a positive dipole derivative favours red-shifted hydrogen bonds, whereas a negative dipole derivative favours blue-shifted hydrogen bonds. However, decreasing hardness of Y (which correlates with increasing intermolecular attraction) modifies the interaction such that either greater C–H bond extensions/red shifts or smaller C–H bond compressions/blue shifts are obtained.     

Effect of substitution and cooperativity on the Cl–F blue shift in single-electron halogen-bonded H3C ··· ClF complex

The effect of substitution and cooperativity on the blue shift of Cl–F stretch vibration in H₃C ··· ClF complex has been studied with quantum chemical calculations at the UMP2(Full)/aug-cc-pVTZ level. The electron-withdrawing group (F atom) in the electron donor decreases the blue shift, whereas the electron-donating group (methyl group) in the electron donor cause it to increase. The cooperativity between two different types of halogen bonds in H₃C ··· ClF ··· ClF complex enhances the strength of single-electron halogen bond and the blue shift. The natural bond orbital (NBO) and atoms in molecules (AIM) analyses have been performed for the halogen-bonded complexes.     

Competition between hydrogen bond and σ-hole interaction in SCS-HArF and SeCSe-HArF complexes

A computational study of the complexes formed between HArF and XCX (X?=?O, S, and Se) has been performed at the MP2/aug-cc-pVTZ level. Two types of complexes were found. One is formed through a hydrogen bond with XCX as the electron donor and the other is formed through the σ-hole interaction with XCX as the electron acceptor. The OCO-FArH complex is more stable than the OCO-HArF complex, whereas the XCX-HArF (X?=?S and Se) complex is more stable than the XCX-FArH complex. The distant H-Ar bond is shortened and exhibits a blue shift, but the associated one displays a red shift in SCS-HArF and SeCSe-HArF complexes. When compared with XCX-HF complex, the structure of the complex suffers a great effect from the inserted noble gas atom. The natural bond orbital (NBO) and atoms in molecules (AIM) have been performed for a better understanding of the interactions.     

Hydrogen bonding involved with superhalogen MX2NY: its influence on the structure and stability of the superhalogen

The hydrogen-bonded complexes formed of superhalogen MX₂NY (M?=?Li, Na; N?=?Be, Mg; X, Y?=?F, Cl, Br) and hydrogen fluoride have been investigated with quantum chemical calculations at the MP2/aug-cc-pVDZ and M06-2X/aug-cc-pVDZ levels of theory. It was shown that the M06-2X method presents similar results with the MP2 method. The strength of hydrogen bonding is related with the nature of metal and halogen atoms. The metal with greater electron-donating ability leads to a stronger hydrogen bond, whereas the halogen with bigger electron-withdrawing ability also results in the stronger hydrogen bond. The presence of hydrogen bond has a small effect on the structures of the superhalogen and contributes to the stability of the superhalogen.     

The influence of halogen-bonding cooperativity on the hydrogen and lithium bonds: an ab initio study

ABSTRACT

Ab initio calculations are carried out to study linear NCH···(NCX)_1–5 and NCLi?…?(NCX)_1–5 clusters (X?=?F, Cl, Br). The aim is to study the influence of halogen-bonding cooperativity on the strength and bonding properties of hydrogen or lithium bond. Particular attention is given to parameters such as binding distances, interaction energies and cooperative energies in these systems. According to our results, the halogen-bonding cooperativity between the NCX molecules has an enhancing effect on the strength of hydrogen and lithium bonds, with an increase of 0.33–0.93 and 0.19–0.43?kcal/mol in NCH···(NCX)_n and NCLi···(NCX)_n, respectively. The enhancing effect of halogen bond on the hydrogen and lithium bond is dependent on the nature of halogen atom, and increases as X?=?F?相似文献   

Cooperative effects between tetrel bond and other σ–hole bond interactions: a comparative investigation

Covalently bonded atoms of Groups IV–VII tend to have anisotropic charge distributions, the electronic densities being less on the extensions of the bonds (σ–holes) than in the intervening regions. These σ–holes often give rise to positive electrostatic potentials through which the atom can interact attractively and highly directionally with negative sites. In this work, cooperative effects between tetrel bond and halogen/chalcogen/pnicogen bond interactions are studied in multi-component YH₃M···NCX···NH₃ complexes, where Y = F, CN; M = C, Si and X = Cl, SH and PH₂. These effects are analysed in detail in terms of the structural, energetic, charge-transfer and electron density properties of the complexes. The nature of the σ–hole bonds is unveiled by quantum theory of atoms in molecules and natural bond orbital theory. A favourable cooperativity is found with values that range between ?0.34 and ?1.15 kcal/mol. Many-body decomposition of interaction energies indicate that two-body energy term is the most important source of the attraction, which its contribution accounts for 87%–96% of the total interaction energy.     

On difference of properties between organic fluorine hydrogen bond C–H···F–C and conventional hydrogen bond

The existence of C–H···F–C hydrogen bonds in the complexes of trifluoromethane and cyclic molecule (oxirane, cyclobutanone, dioxane, and pyridine) has been experimentally proven by Caminati and co-workers. This study presents a theoretical investigation on these C–H···F–C hydrogen bonds at B97D/6-311++G^** and MP2/6-311++G^** levels, in terms of C–H vibrational frequency shifts, atoms in molecules characteristics, and the bonding feature of C–H···F–C hydrogen bonds. It is found that in three important aspects, there are significant differences in properties between C–H···F–C and conventional hydrogen bonds. The C–H···F–C hydrogen bonds show a blueshift in the C–H vibrational frequencies, instead of the X–H normal redshift in X–H···Y conventional hydrogen bonds. The natural bond orbital (NBO) analyses show that σ and p types of lone pair orbitals of the F atom to an antibonding σ^*_H–C orbital form a dual C–H···F–C hydrogen bond. Such a dual hydrogen bonding leads to the proton acceptor directionality of the C–H···F–C hydrogen bond softer. Our studies also show that the Laplacian of the electron density (▽²ρ_BCP) is not always a good criterion for hydrogen bonds. Therefore, we should not recommend the use of the Laplacian of the electron density as a criterion for C–H···F–C hydrogen bonds.     

Halogen bond between hypervalent halogens YF3/YF5 (Y=Cl,Br, I) and H2X (X= O,S, Se)

ABSTRACT

The complexes of H₂X (X?=?O, S, Se) with hypervalent halogens YF₃ and YF₅ (Y?=?Cl, Br, I) have been studied. The σ-hole on the Y atom participates in a halogen bond with the lone pair on the chalcogen atom. In addition, some secondary interactions coexist with the halogen bond in most complexes. The interaction energy correlates with the nature of both X and Y atoms. In most cases, the complex is more stable for the heavier Y atom and the lighter X atom. Of course, there are some exceptions in H₂X···YF₃. YF₃ forms a more stable complex with H₂X than does YF₅. These complexes are dominated by electrostatic interaction and the halogen bond involving H₂S and H₂Se exhibits some covalent character.

Halogen bond plays an important role in chemical reactions and multivalent halogens can regulate chemical reactions by participating in a halogen bond. Thus we compare the effect of the chalcogen electron donor on the strength and nature of halogen bonding involving multivalent halogens.     

2,2,6,6-四甲基哌啶氮氧自由基与卤仿形成卤键或氢键的理论研究

利用理论计算化学研究了2,2,6,6-四甲基哌啶-N-氧自由基与卤仿形成卤键和氢键络合物的可能性. 从分子静电势、络合物分子的结构参数、络合物的作用能以及自然键轨道理论的角度着手研究. 结果表明,卤键与氢键络合物的键合能均遵循氯化物<溴化物<碘化物,氢键络合物作用强度大于相应的卤键络合物. 因此,卤仿与2,2,6,6-四甲基哌啶-N-氧自由基之间作用模式氢键为主. 需要注意的是,碘仿形成卤键的作用强度与氢键相当,因此在碘仿中,卤键与氢键两种模式应该竞争性的存在.     

Density functional study of uranyl （VI） amidoxime complexes

Uranyl (Ⅵ) amidoxime complexes are investigated using relativistic density functional theory. The equilibrium structures, bond orders, and Mulliken populations of the complexes have been systematically investigated under a generalized gradient approximation (GGA). Comparison of (acet) uranyl amidoxime complexes ([UO 2 (AO) n ] 2 n , 1≤ n ≤4) with available experimental data shows an excellent agreement. In addition, the U-O(1), U-O(3), C(1)-N(2), and C(3)-N(4) bond lengths of [UO 2 (CH 3 AO) 4 ] 2 are longer than experimental data by about 0.088, 0.05, 0.1, and 0.056 A. The angles of N(3)-O(3)-U, O(2)-N(1)-C(1), N(3)-C(3)-N(4), N(4)-C(3)-C(4), and C(4)-C(3)-N(3) are different from each other, which is due to existing interaction between oxygen in uranyl and hydrogen in amino group. This interaction is found to be intra-molecular hydrogen bond. Studies on the bond orders, Mulliken charges, and Mulliken populations demonstrate that uranyl oxo group functions as hydrogen-bond acceptors and H atoms in ligands act as hydrogen-bond donors forming hydrogen bonds within the complex.     

An ab initio study on the nature of σ-hole interactions in pnicogen-bonded complexes with carbene as an electron donor

ABSTRACT

A theoretical study of the complexes formed between ZH₂X (Z = P, As, Sb, Bi; X = F, Cl, Br, CN, NC, OH, NH₂) and an N-heterocyclic carbene (imidazol-2-ylidene) is carried out by means of ab initio calculations. According to molecular electrostatic potential analysis, it is inferred that the divalent C atom of the carbene can act as a Lewis base with the pnicogen atom Z of ZH₂X. The pnicogen bond distances (Z–C) are in the range of 2.050–2.911 for these complexes. While the Z?X bonds are longer than the corresponding Z?C bonds in the X = Cl and Br complexes, most of the Z?X bonds are short enough to suggest that they should be considered as covalent bonds which have lost some degree of covalency. For a given Z, the ZH₂Br forms the strongest complex, followed by ZH₂Cl and ZH₂F. On the other hand, the binding energy in the halogenated ZH₂X complexes follows the reverse ranking expected based on the values of the σ-hole of the isolated ZH₂X monomers. The nature of the pnicogen bond interaction in these complexes is analysed by quantum theory of atoms in molecules (QTAIM) and natural bond orbital methods. According to QTAIM analysis, a partially covalent character can be attributed to the pnicogen bonds studied here.     

Prediction and characterisation of a chalcogen···π interaction with acetylene as a potential electron donor in XHS···HCCH and XHSe···HCCH (X = F,Cl, Br,CN, OH,OCH3, NH2, CH3) σ-hole complexes

It is well-known that many covalently bonded atoms of group VI have specific positive regions of electrostatic potential (σ-holes) through which they can interact with Lewis bases. This interaction is called ‘chalcogen bond’ by analogy with halogen bond and hydrogen bond. In this study, ab initio calculations are performed to predict and characterise chalcogen···π interactions in XHS···HCCH and XHSe···HCCH complexes, where X = F, Cl, Br, CN, OH, OCH₃, NH₂, CH₃. For the complexes studied here, XHS(Se) and HCCH are treated as a Lewis acid and a Lewis base, respectively. The CCSD(T)/aug-cc-pVTZ interaction energies of this type of σ-hole bonding range from ?1.18 to ?4.83 kcal/mol. The calculated interaction energies tend to increase in magnitude with increasing positive electrostatic potential on the extension of X–S(Se) bond. The stability of chalcogen···π complexes is attributed mainly to electrostatic and correlation effects. The nature of chalcogen···π interactions is unveiled by means of the atoms in molecules, natural bond orbital, and electron localisation function analyses.     

Theoretical study of the HXYH dimers (X,Y = O,S, Se). Hydrogen bonding and chalcogen–chalcogen interactions

A theoretical study of the HXYH (X, Y?=?O, S and Se) monomers and dimers has been carried out by means of MP2 computational methods. For the monomers, isomerization (H₂X=Y//HXYH) and rotational transition state barriers have been calculated. Additionally, the molecular electrostatic potential of the isolated monomers has also been analysed. Due to the chiral nature of these compounds, homo and heterochiral dimers have been explored. The number of minima found for the dimers range between 13 and 22. The electron density of the complexes has been characterized with the Atoms in Molecules (AIM) methodology finding a large variety of interactions. The DFT-SAPT method has been used to analyse the components of the interaction energies. Concerning chalcogen–chalcogen interactions, although the most stable minima are formed through hydrogen bonds (especially if OH groups are present in the molecules) as the size of the atoms involved in the interaction increase, the chalcogen–chalcogen contacts become more important.     

Cooperativity between the hydrogen bonding and halogen bonding in F3CX ··· NCH(CNH) ··· NCH(CNH) complexes (X=Cl,Br)

MP2 calculations with the cc-pVTZ basis set were used to analyse the intermolecular interactions in F₃CX?···?NCH(CNH)?···?NCH(CNH) triads (X=Cl, Br), which are connected via hydrogen and halogen bonds. Molecular geometries, binding energies, and infrared spectra of the dyads and triads were investigated at the MP2/cc-pVTZ computational level. Particular attention was given to parameters such as the cooperative energies, cooperative dipole moments, and many-body interaction energies. All studied complexes, with the simultaneous presence of a halogen bond and a hydrogen bond, show cooperativity with energy values ranging between ?1.32 and ?2.88?kJ?mol^?1. The electronic properties of the complexes were analysed using the Molecular Electrostatic Potential (MEP), electron density shift maps and the parameters derived from the Atoms in Molecules (AIM) methodology.     

Ramsey terms for two-, three-, and four-bond coupling involving 15N and 17O in hydrogen-bonded and nonhydrogen-bonded systems: are coupling constants sensitive to RAHBs?

Ab initio EOM-CCSD/(qzp,qz2p) calculations have been performed on complexes with intermolecular hydrogen bonds involving ¹⁵N and ¹⁷O, and molecules with and without intramolecular hydrogen bonds involving these nuclei. Coupling constants across intermolecular hydrogen bonds are well approximated by the Fermi-contact (FC) term. In general, ^2hJ(X–Y) for intramolecular coupling across X–H^…Y hydrogen bonds are not sensitive to the presence of resonance-assisted hydrogen bonds (RAHBs). However, ^2hJ(O–O) for coupling across the intramolecular hydrogen bond in malonaldehyde is greater than ^2hJ(O–O) for its saturated counterpart, so that ^2hJ(O–O) is sensitive to the presence of the RAHB. This is also the case for the sulphur analogues of malonaldehyde. For these unsaturated hydrogen-bonded molecules, molecules with carboxyl groups, and trans-glyoxal, J is dominated by the paramagnetic spin orbit (PSO) term. For these systems, the primary mode of coupling transmission is through the conjugated chain. For complexes with intermolecular hydrogen bonds, saturated molecules with intramolecular hydrogen bonds, unsaturated and saturated molecules in which the hydrogen bond has been broken, and unsaturated molecules with intramolecular N–H^…N or O–H^…N hydrogen bonds, J is dominated by the FC term. FC domination in hydrogen-bonded systems indicates that the primary transmission mode is across the hydrogen bond.     

Hydrogen bond nature in formamide (CYHNH2···XH; YO,S, Se,Te; XF,HO, NH2) complexes at their ground and low‐lying excited states

A theoretical study on the nature of hydrogen bond for formamide and its heavy complexes (CYHNH₂···XH; Y?O, S, Se, Te; X?F, HO, NH₂) was performed on the basis of density functional theory and the quantum chemistry analysis. Except for the CYHNH₂···NH₃ complexes, the substitution of O atom at formamide with less electronegative atoms (S, Se, and Te) is found to weaken the hydrogen bond (H‐bond). This substitution results in cyclic structure of hydrated and ammoniated formamide complexes by the formation of bifunctional H‐bonds (Y···H₄X; X···H₃C). Natural bond orbital analysis indicates that the H‐bond is weakened because of less charge transfer from a lone pair orbital of H‐bond acceptor to antibonding orbital of H‐bond donor. The quantum theory of atoms in molecules analysis reveals that the acyclic structure with single H‐bond stabilizes the complexes more than the cyclic structure formed by bifunctional H‐bonds. Natural energy decomposition analysis (NEDA) and block‐localized wavefunction energy decomposition (BLW‐ED) analyses show that the H‐bond stabilization energies of NEDA and BLW‐ED have good correlation with the dissociation energy of formamide complexes and charge transfer from donor to acceptor atom play an important role in H‐bonding. We have also studied the low‐lying electronic excited states (T₁, T₂, and S₁) for CYHNH₂···H₂O complexes to explore the nature of H‐bond on the basis of electronegativity and found that NEDA also establishes a good correlation with relative electronic energy (with respect to their ground state) and H‐bond strength at their excited states. Copyright © 2014 John Wiley & Sons, Ltd.