气相中HOCl和O3分子间氯键和氢键的结构和性质

在DFT-B3LYP/6-311 G**水平上分别求得O3…ClOH氯键复合物和O3…HOCl氢键复合物势能面上的稳定构型.频率分析表明,与单体HOCl相比,分别在两种复合物中,Cl4-O5和H6-O5键伸缩振动频率发生红移,红移值分别为5.70和76.44cm-1.经MP2/6-311 G**水平计算的含BSSE和零点振动能校正的气相中相互作用能分别为-2.102和-4.920 kJ·mol-1.NBO分析表明,在O3…ClOH氯键复合物中,引起Cl4-05键变长的因素包括2种电荷转移:(1)LP(O1)1→σ*(C14-05);(2)LP(O1)2→σ*(Cl4-O5),其中LP(O1)2→σ*((Cl4-O5)转移占主要作用,总的结果是使σ*(Cl10-O11)的自然布居数增加了14.44 me;在O3…HOCl氢键复合物中也存在类似的电荷转移,结果使σ*(H6-O5)的自然布居数增加了18.09 me.NRT理论进行键序分析表明,在氯键复合物和氢键复合物中,Cl4-O5和H6-O5键的键序都减小,与红外光谱频率计算分析和NBO分析的结论一致.AIM理论分析表明,分别在两种复合物中,O1…Cl4间和O1…H6间都存在键鞍点,而且O1…Cl4和O1…H6的P(r)都较小,分别为0.0111和0.0152 a.u.,说明复合物中的氯键和氢键相互作用较弱.另外,O1…Cl4氯键和O1…H6氢键的Laplacian量(△)ρP(r)分别为0.0479和0.0641 a.u.,都是较小的正值,说明这两种相互作用都以静电作用为主.     

1,2,3-三氮杂苯-水复合物氢键相互作用

用密度泛函理论在B3LYP/6-31 G**水平上对1,2,3-三氮杂苯和水形成1:1、1:2和1:3复合物的基态氡键结构进行几何优化和性质计算．计算结果表明,复合物之间存在较强的氢键作用．所有稳定复合物结构中形成一个N…H-O氢键并终止于O…H-C氢键的氢键水链构型最稳定．氢键的形成是水分子中H-O键振动频率减小(红移)．NBO分析表明,最稳定的1:1、1:2和1:3复合物发生分子间电荷转移总量分别为0．0222e、0．0261e和0．0273e．同时,用含时密度泛函理论方法在TD-B3LYP/6-31 G**水平计算了1,2,3-三氮杂苯单体及其氢键复合物的第一1(n,π*)激发态的垂直激发能．     

DFT理论研究焦磷酸与水的分子间相互作用

在PBEPBE/6-311++G**水平上,对H4P2O7 单体及H4P2O7…H2O氢键复合物的可能构型进行优化,频率验证,找到复合物的稳定结构,并分析其结构参数,在同样的水平下计算了复合物的结合能,同时进行了振动频率分析。结果表明,H4P2O7 单体稳定构型具有C2对称性,对于H4P2O7…H2O复合物,得到三个稳定构型,其中最稳定复合物的结合能为-18.784kcal/mol,水与H4P2O7作用位置在连接两个相邻磷酸基的分子内氢键上,形成含有两个较强氢键的多元环状复合物。     

扑尔敏分子的密度泛函理论研究

马来酸氯苯那敏（chlorpheniramine maleate,CPM）,化学名为2-[对-氯-α-（二甲氨基）乙基丁苯基], 又名扑尔敏,分子式C20H23ClN2O4,本文采用密度泛函理论（density functional theory,DFT）,在M06-2X/6-311+g(d,p)水平上对扑尔敏分子的两种可能的结构进行了优化,优化结果显示分子基态结构具有C1对称性,分子由50个原子组成,共有144个简正自由度,所有的简正振动模式均具有拉曼活性。计算结果表明,吡啶环和苯环所在平面的二面角是92.1°,丁烯二酸和苯环所在平面的二面角是-174.5°。O40-H41和H41-N25键长分别为0.103nm、0.162nm,O40-H41-N25键角为175.29°,采用多功能波函数Multiwfn软件处理结果表明用于表征氢键强度的CVB指数（CVB指数越负,通常氢键越强。）为-0.2268,结果表明O40-H41-N25原子之间存在氢键,马来酸通过羧基上的氢原子和氯苯那敏吡啶环上的N原子通过氢键作用相结合;通过频率计算,获得了扑尔敏分子的拉曼光谱,并利用势能函数分布（PED）对拉曼光谱进行了指认,对谱图信息比较丰富的200-1800cm-1波段进行了分析归属;此外分析并讨论了扑尔敏分子的前线轨道,扑尔敏分子的最高占据轨道HOMO和最低未占据分子轨道LUMO轨道能量分别为-7.95ev、-1.05ev,能级差为6.90ev。为扑尔敏分子的光谱测定和电子结构分析提供了理论基础。     

芳香性取代基对2-(2-羟基苯基)苯并咪唑激发态质子转移和光谱性质影响的理论研究

运用密度泛函(DFT)和含时密度泛函(TD DFT)理论方法研究了在2-(2-羟基苯基)苯并咪唑(HBI)苯环羟基的对位分别被呋喃基、吡咯基等五种芳香性取代基后的衍生物(HBI-R)分子内质子转移过程,考察了取代基的电子离域效应对分子结构、分子内氢键和质子转移的影响,模拟计算了各分子的IR振动光谱和电子光谱。研究发现,基态的HBI与HBI-R分子内氢键O—H…N比O…H—N强度大,因氢键中的O—H增长和H—N的缩短,激发态氢键O—H…N弱于O…H—N强度,基态和激发态的稳定构型分别为醇式和酮式结构,取代基总体上使酮式构型相对稳定性有所增加,但呋喃基、吡咯基和噻吩基却略降低了激发态酮式构型相对稳定性。取代基降低了HBI基态和激发态分子内质子转移反应的能垒,但影响不大。电子吸收光谱的最大吸收峰和荧光光谱的最大发射峰主要源于前线分子轨道HOMO与LUMO之间的电子跃迁,芳环取代基增强了电子离域效应,使光谱的吸收峰和发射峰波长均有较大的红移。     

激发态下甘氨酸与水分子间氢键性质研究

在生物体中氨基酸通常以水作为溶剂,是形成细胞的重要成分.在该环境下,分子间氢键的产生会对氨基酸分子与水分子的结构和性质产生影响.为了研究其在基态和激发态下的性质,本文利用密度泛函理论(DFT)和含时密度泛函理论(TD-DFT)对甘氨酸分子和H₂O分子在基态和激发态下的分子间氢键的静电势、键长、自然键轨道(NBO)电荷、分子中的原子理论(AIM)分析、Wiberg键级b、红外(IR)光谱、空穴-电子轨道和基态与激发态之间的电子转移进行了理论研究.结果表明：分子间氢键的形成会导致分子结构的改变和红外光谱振动频率的移动.在激发态下,分子间氢键有不同程度的增强或减弱.该计算结果为氢键的形成和激发态下分子间氢键的研究提供理论依据.     

采用密度泛函理论研究二甲基胺-二苯甲酮的分子内电荷转移激发态氢键

利用(含时)密度泛函理论研究了二甲基胺-二苯甲酮(DMABP)及其氢键二聚物DMABP-MeOH的光物理性质和弛豫动力学过程. 结果表明,在非极性和非质子性溶剂中,DMABP分子的第一和第二激发态跃迁同时具有局域激发和分子内电荷转移的特征;在极性质子性溶剂中,分子间氢键C=O…H-O的形成增加了这两个最低激发态之间的能量差,使DMABP-MeOH的第一激发态具有较强极性的分子内电荷转移特性. 通过计算DMABP和DMABP-MeOH分子的激发态构型弛豫势能曲线研究了激发态动力学弛豫过程. 结果表明,通过扭     

邻二氮杂苯-水复合物氢键相互作用的理论研究

用密度泛函理论B3LYP方法和MP2方法分别对邻二氮杂苯与水形成1∶1和1∶2复合物的基态氢键结构与相互作用能进行了理论计算,结果表明复合物之间存在较强的氢键N…H-O相互作用,在复合物中,水的H-O对称伸缩振动频率明显红移.同时,使用含时密度泛函理论方法计算了邻二氮杂苯单体及复合物的第一1(n,π)和1(π,π)激发态的垂直激发能.     

一种新型钼磷酸盐杂多化合物(NH3CH2CH2NH3)7H2[NaMo12O30(PO4)2(HPO4)5(H2PO4)]·7H2O的合成和光谱研究

本文采用水热反应条件 ,合成得到一种新型的含五价钼原子的杂多化合物 :(NH3CH2 CH2 NH3) 7H2[NaMo1 2 O30 (PO4 ) 2 (HPO4 ) 5(H2 PO4 ) ]·7H2 O ,在晶体结构测定的基础上对其进行红外、拉曼和紫外 可见漫反射光谱研究。结果表明 :较长的Mo(Ⅴ )—O键键长和分子内大量的氢键造成化合物红外光谱特征的红移。     

基于密度泛函理论的肾上腺素分子的光谱分析

肾上腺素是一种神经和激素的传送体,研究肾上腺素分子的光谱和能级有助于了解其化学稳定性和药理作用。基于密度泛函理论（DFT）,利用Gaussian 09软件在B3LYP/6-311G（d,p）基组水平上对肾上腺素分子进行结构优化,采用含时密度泛函理论（TD-DFT）的PBE方法在def2tzvp基组水平上计算肾上腺素分子在气相中的前20个激发态,利用Multiwfn3.7（dev）软件绘制出其紫外光谱图并对激发性质进行分析。肾上腺素分子紫外光谱对应的主要跃迁是从基态分别到第1,2,4,8,15和16激发态的跃迁,其他的激发态的振子强度低于阈值0.03。理论计算得出肾上腺素的紫外光谱有两个吸收峰,分别位于206.23和273.92 nm,206.23 nm峰主要由基态跃迁到第16激发态形成,273.92 nm峰主要是基态跃迁到第2、4激发态形成,主要是由苯环上π→π*跃迁所产生,并与实验光谱吻合较好。对肾上腺素分子的激发态性质分析可知,上述吸收峰都是在最高占据轨道和最低空轨道的临近轨道跃迁产生的。利用密度泛函的PBE方法在6-311G（d, p）的基组水平上计算肾上腺素分子频率并绘制红外光谱,由振动分析可知,3 738和3 662 cm-1峰是由酚羟基O-H伸缩振动产生的特征吸收峰,3 715 cm-1峰是由醇羟基O-H伸缩振动产生的特征吸收峰,2 854 cm-1峰是由甲基的C18-H20键的伸缩振动产生的特征吸收峰,1 516和1 439 cm-1峰是苯环骨架的伸缩振动的特征吸收峰,1 279与1 057 cm-1峰分别是由C6-O10和C12-O23键伸缩振动产生的特征吸收峰,620 cm-1峰是N22-H17键摇摆振动的特征吸收峰。对比肾上腺素的实验红外光谱,发现理论光谱与实验光谱中各基团的特征吸收峰都较为明显且总体吻合较好。由于肾上腺素分子二聚体和多聚体之间形成氢键,分子间氢键的形成削弱了O-H键的强度,降低了能形成分子间氢键的羟基O-H的伸缩振动频率,从而导致实验光谱在3 500～2 500 cm-1之间呈现出一个宽峰。     

Hydrogen-bonding studies of amino acid side-chains with DNA base pairs

The interactions of the amino acid side-chains arginine (ARG), aspartic acid (ASP), asparagine (ASN), lysine (LYS) and serine (SER) with nucleic acid base pairs have been investigated using theoretical methods. The interaction energy of the short intermolecular N–H?···?N, N–H?···?O, O–H?···?O, O–H?···?N, C–H?···?O and C–H?···?N hydrogen bonds present in both isolated base pairs and complexes and its role in providing stability to the complexes have been explored. The homonuclear interactions are found to be stronger than the heteronuclear interactions. An improper hydrogen bond has been observed for some of the N–H?···?O and N–H?···?N hydrogen-bond interactions with the contraction of the N–H bond varying from 0.001 to 0.0260?Å and the corresponding blue shift of the stretching frequency by 4–291?cm^?1. Localized molecular orbital energy decomposition analysis (LMOEDA) reveals that the major contributions to the energetics are from the long-range polarization (PL) interaction, and the short-range attractive (ES, EX) and repulsive (REP) interactions. The Bader's atoms in molecules (AIM) theory shows good correlation for the electron density and its Laplacian at the bond critical points (BCP) with the N–H?···?N and N–H?···?O hydrogen-bond lengths in the complexes, and gives a proper explanation for the stability of the structure. The charge-transfer from the proton acceptor to the antibonding orbital of the X–H bond in the complexes was studied using natural bond orbital (NBO) analysis.     

Hydrogen bond nature in formamide (CYHNH2···XH; YO,S, Se,Te; XF,HO, NH2) complexes at their ground and low‐lying excited states

A theoretical study on the nature of hydrogen bond for formamide and its heavy complexes (CYHNH₂···XH; Y?O, S, Se, Te; X?F, HO, NH₂) was performed on the basis of density functional theory and the quantum chemistry analysis. Except for the CYHNH₂···NH₃ complexes, the substitution of O atom at formamide with less electronegative atoms (S, Se, and Te) is found to weaken the hydrogen bond (H‐bond). This substitution results in cyclic structure of hydrated and ammoniated formamide complexes by the formation of bifunctional H‐bonds (Y···H₄X; X···H₃C). Natural bond orbital analysis indicates that the H‐bond is weakened because of less charge transfer from a lone pair orbital of H‐bond acceptor to antibonding orbital of H‐bond donor. The quantum theory of atoms in molecules analysis reveals that the acyclic structure with single H‐bond stabilizes the complexes more than the cyclic structure formed by bifunctional H‐bonds. Natural energy decomposition analysis (NEDA) and block‐localized wavefunction energy decomposition (BLW‐ED) analyses show that the H‐bond stabilization energies of NEDA and BLW‐ED have good correlation with the dissociation energy of formamide complexes and charge transfer from donor to acceptor atom play an important role in H‐bonding. We have also studied the low‐lying electronic excited states (T₁, T₂, and S₁) for CYHNH₂···H₂O complexes to explore the nature of H‐bond on the basis of electronegativity and found that NEDA also establishes a good correlation with relative electronic energy (with respect to their ground state) and H‐bond strength at their excited states. Copyright © 2014 John Wiley & Sons, Ltd.     

Effect of proton donors on the intramolecular coordination C=O→Si–F in (acyloxymethyl)trifluorosilanes. Ab initio,DFT and FTIR study,QTAIM analysis

The intramolecular С=O→Si coordination in H‐complexes of (acetoxymethyl)trifluorosilane and (benzoyloxymethyl)trifluorosilane with proton donors HCl, PhOH, MeOH, and CHCl₃ was investigated by density functional theory and second‐order Møller‐Plesset perturbation theory (MP2) methods. Interrelation and mutual influence of the intramolecular coordination bond С=O→Si and intermolecular hydrogen bonds C=O···H and Si–F···H in H‐complexes was established using the AIM and NBO analyses. The С=O→Si coordination is weakened by the C=O···H hydrogen bonding but enhanced by the Si–F_ax···H hydrogen bonding. The structure of H‐complexes of (acetoxymethyl)trifluorosilane with proton donors in solution was determined by comparing the ν(C=O) and ν(Si–F) frequencies calculated using the conductor‐like polarizable continuum model and their experimental Fourier transform infrared values. Copyright © 2014 John Wiley & Sons, Ltd.     

Time‐dependent density functional theory study on the excited‐state hydrogen bonding strengthening of photoexcited 4‐amino‐1,8‐naphthalimide in hydrogen‐donating solvents

The time‐dependent density functional theory (TDDFT) method was performed to investigate the excited‐state hydrogen bonding dynamics of 4‐amino‐1,8‐naphthalimide (4ANI) as hydrogen bond acceptor in hydrogen donating methanol (MeOH) solvent. The ground‐state geometry optimizations, electronic transition energies and corresponding oscillation strengths of the low‐lying electronically excited states for the isolated 4ANi and hydrogen‐bonded 4ANi‐(MeOH)_1,4 complexes were calculated by the DFT and TDDFT methods, respectively. We demonstrated that the intermolecular hydrogen bond C═O···H–O and N–H···O–H in the hydrogen‐bonded 4ANi‐(MeOH)_1,4 is strengthened in the electronically excited state, because the electronic excitation energies of the hydrogen‐bonded complex are correspondingly decreased compared with that of the isolated 4ANi. The calculated results are consistent with the mechanism of the hydrogen bond strengthening in the electronically excited state, while contrast with mechanism of hydrogen bond cleavage. Furthermore, we believe that the transient hydrogen bond strengthening behavior in electronically excited state of fluorescent dye in hydrogen‐donating solvents exists in many other systems in solution. Copyright © 2013 John Wiley & Sons, Ltd.     

A detailed DFT/TDDFT study on excited‐state intramolecular hydrogen bonding dynamics and proton‐transfer mechanism of 2‐phenanthro[9,10‐d]oxazol‐2‐yl‐phenol

In this present work, using density functional theory and time‐dependent density functional theory methods, we theoretically study the excited‐state hydrogen bonding dynamics and the excited state intramolecular proton transfer mechanism of a new 2‐phenanthro[9,10‐d]oxazol‐2‐yl‐phenol (2PYP) system. Via exploring the reduced density gradient versus sign(λ₂(r))ρ(r), we affirm that the intramolecular hydrogen bond O1‐H2?N3 is formed in the ground state. Based on photoexcitation, comparing bond lengths, bond angles, and infrared vibrational spectra involved in hydrogen bond, we confirm that the hydrogen bond O1‐H2?N3 of 2PYP should be strengthened in the S₁ state. Analyses about frontier molecular orbitals prove that charge redistribution of 2PYP facilitates excited state intramolecular proton transfer process. Via constructing potential energy curves and searching transition state structure, we clarify the excited state intramolecular proton transfer mechanism of 2PYP in detail, which may make contributions for the applications of such kinds of system in future.     

Elaborating the excited state behavior of 2‐(4′‐N,N‐dimethylaminophenyl)‐imidazo[4,5‐c]pyridine coupling with methanol solvent

We present a theoretical investigation about the excited state dynamical mechanism of 2‐(4′‐N,N‐dimethylaminophenyl)‐imidazo[4,5‐c]pyridine (DMAPIP‐c). Within the framework of density functional theory and time‐dependent density functional theory methods, we reasonably repeat the experimental electronic spectra, which further confirm the theoretical level used in this work is feasible. Given the best complex model, 3 methanol (MeOH) solvent molecules should be connected with DMAPIP‐c forming DMAPIP‐c‐MeOH complex in both ground state and excited state. Exploring the changes about bond lengths and bond angles involved in hydrogen bond wires, we find the O7‐H8···N9 one should be largely strengthened in the S₁ state, which plays an important role in facilitating the excited state intermolecular proton transfer (ESIPT) process. In addition, the analyses about infrared vibrational spectra also confirm this conclusion. The redistribution about charges distinguished via frontier molecular orbitals based on the photoexcitation, we do find tendency of ESIPT reaction due to the most charges located around N9 atom in the lowest unoccupied molecular orbital. Based on constructing the potential energy curves of both S₀ and S₁ states, we not only confirm that the ESIPT process should firstly occur along with hydrogen bond wire O7‐H8···N9, but also find a low potential energy barrier 8.898 kcal/mol supports the ESIPT reaction in the S₁ state forming DMAPIP‐c‐MeOH‐PT configuration. Subsequently, DMAPIP‐c‐MeOH‐PT could twist its dimethylamino moiety with a lower barrier 3.475 kcal/mol forming DMAPIP‐c‐MeOH‐PT‐TICT structure. Our work not only successfully explains previous experimental work but also paves the way for the further applications about DMAPIP‐c sensor in future.     

硝酸羟胺-(H_2O)_n复合物氢键相互作用的密度泛函研究

为研究硝酸羟胺-(H_2O)_n复合物的氢键作用,采用密度泛函B3LYP方法在6-311++G(d, p)基组水平上对硝酸羟胺-(H_2O)_n复合物的结构进行优化,采用MP2/6-311++G(d, p)方法,经基组叠加误差和零点能校正计算得到复合物的相互作用能.利用自然键轨道分析方法研究复合物氢键作用的本质,并对复合物中水分子的振动光谱进行分析.计算结果表明,硝酸羟胺-(H_2O)_n复合物存在着6个硝酸羟胺-H_2O稳定构型和8个硝酸羟胺-(H_2O)_2稳定构型,且最稳定构型的相互作用能分别为52.821 kJ·mol~(-1)和73.349 kJ·mol~(-1).在硝酸羟胺-(H_2O)_n复合物中,水中H-O伸缩振动频率明显红移,且红移增大的程度与复合物稳定化能的变化趋势基本一致.     

A theoretical study on the ESPT mechanism for a novel Bis‐HPBT fluorophore

In this work, based on the density functional theory and time‐dependent density functional theory methods, the properties of the 2 intramolecular hydrogen bonds (O1‐H2···N3 and O4‐H5···N6) of a new photochemical sensor 4‐(3‐(benzo[d]thiazol‐2‐yl)‐5‐tert‐butyl‐4‐hydroxybenzyl)‐2‐(benzo[d]thiazol‐2‐yl)‐6‐tert‐butyl phenol (Bis‐HPBT) have been investigated in detail. The calculated dominating bond lengths and bond angles about these 2 hydrogen bonds (O1‐H2···N3 and O4‐H5···N6) demonstrate that the intramolecular hydrogen bonds should be strengthened in the S₁ state. In addition, the variations of hydrogen bonds of Bis‐HPBT have been also testified based on infrared vibrational spectra. Our theoretical results reproduced absorption and emission spectra of the experiment, which verifies that the theoretical level we used is reasonable and effective in this work. Further, hydrogen bonding strengthening manifests the tendency of excited state intramolecular proton transfer (ESIPT) process. Frontier molecular orbitals depict the nature of electronically excited state and support the ESIPT reaction. According to the calculated results of potential energy curves along stepwise and synergetic O1‐H2 and O4‐H5 coordinates, the potential energy barrier of approximately 1.399 kcal/mol is discovered in the S₁ state, which supports the single ESIPT process along with 1 hydrogen bond of Bis‐HPBT. In other words, the proton transfer reaction can be facilitated based on the electronic excitation effectively. In turn, through the process of radiative transition, the proton‐transfer Bis‐HPBT‐SPT form regresses to the ground state with the fluorescence of 539 nm.     

Excited‐state hydrogen bond strengthening of coumarin 153 in ethanol solvent: a TDDFT study

So far, coumarin dyes have been extensively studied with various means to understand their photophysical behaviors and photochemical properties. Here, our performing time‐dependent density functional theory calculation is aimed at exploring the excited‐state hydrogen bonding dynamics of coumarin 153 (C153) in protic ethanol (EtOH) solvent. The calculated results suggest that the excited‐state hydrogen bond C?O?H?O between C?O group and O?H group in the C153‐EtOH complex is strengthened, and the S₀ → S₁ transition of the complex corresponds to the highest occupied molecular orbital (HOMO) hopping to the lowest unoccupied molecular orbital (LUMO). The excited‐state hydrogen bond strengthening has been further confirmed by its larger binding energy in the S₁ state than in the S₀ state. In addition, because of the formation of the hydrogen bond C?O?H?O, a red shift of about 7 nm occurs in the electronic spectra of the C153‐EtOH complex, which is in good accordance with the experiment result. Copyright © 2016 John Wiley & Sons, Ltd.     

Theoretical insight into the excited‐state behavior of a novel Compound 1: A TDDFT investigation

In the present work, using density functional theory and time‐dependent density functional theory methods, we investigated and presented the excited‐state intramolecular proton transfer (ESIPT) mechanisms of a novel Compound 1 theoretically. Analyses of electrostatic potential surfaces and reduced density gradient (RDG) versus sign(λ₂)ρ, we confirm the existence of intramolecular hydrogen bond O1‐H2···N3 for Compound 1 in the S₀ state. Comparing the primary structural variations of Compound 1 involved in the intramolecular hydrogen bond, we find that O1‐H2···N3 should be strengthened in the S₁ state, which may facilitate the ESIPT process. Concomitantly, infrared (IR) vibrational spectra analyses further verify the stability of hydrogen bond. In addition, the role of charge transfer interaction has been addressed under the frontier molecular orbitals, which depicts the nature of electronical excited state and supports the ESIPT reaction. The theoretically scanned and optimized potential energy curves according to variational O1‐H2 coordinate demonstrate that the proton transfer process should occur spontaneously in the S₁ state. It further explains why the emission peak of Compound 1‐enol was not reported in previous experiment. This work not only presents the ESIPT mechanism of Compound 1 but also promotes the understanding of this kind of molecules for further applications in future.