吡喃并[3,2-c]吡啶-5-酮衍生物与血清白蛋白相互作用的光谱和分子对接研究

通过荧光光谱和紫外-可见吸收光谱法,在模拟生理条件下,研究了吡喃并[3,2-c]吡啶-5-酮衍生物-2-氨基-7-甲基-3-氰基-4-(4-甲苯)-吡喃并[3,2-c]吡啶-5-酮(AMP)与牛血清白蛋白(BSA)的相互作用。探讨了AMP对BSA的荧光猝灭过程的猝灭机理。不同温度下的Stern-Volmer曲线和紫外-可见吸收光谱表明:该衍生物主要以静态猝灭的方式使牛血清白蛋白的荧光猝灭。热力学参数表明两者之间的作用力类型主要为疏水作用力。用同步荧光技术考察了这一衍生物对牛血清白蛋白构象的影响。分子对接表明,该衍生物可能位于白蛋白的疏水腔IIA处。     

光谱法与分子模拟研究胡椒碱对牛血清白蛋白的键和作用

利用荧光光谱法及紫外吸收光谱法结合计算机模拟技术研究了在模拟生理条件下胡椒碱(piperine)与牛血清白蛋白(Bovine Serum Albumin, BSA)的相互作用. 根据荧光猝灭的有关方程分别求得不同温度下(298, 308和318 K)药物与蛋白相互作用的结合常数、结合位点数及键合距离. 实验所得到的热力学参数(ΔHӨ＝－9.55 kJ/mol, ΔSӨ＝46.75 J•mol－1•K－1)表明维持药物与蛋白质的相互作用力主要是疏水作用和静电作用. 分子模拟的结果显示了胡椒碱与BSA的键合机理和键合模式, 表明维持药物与蛋白质的相互作用力主要是疏水作用和氢键(位于氨基酸残基His 242, Arg 222和Arg 218位). 此外, 基于胡椒碱的荧光猝灭效应, 首次探讨了药物-蛋白质体系的几种物理化学参数, 包括电荷密度(δ)、离解常数(Kd)及量子产率(F)的变化效应.     

三种香豆素类中药小分子与牛血清白蛋白的相互作用

运用荧光光谱(FS)、紫外光谱(UV)法研究了三种香豆素中药小分子与牛血清白蛋白(BSA)的相互作用.实验结果表明,香豆素类小分子能够插入BSA分子内部与BSA形成基态复合物导致BSA内源荧光猝灭,猝灭机理主要为静态猝灭和非辐射能量转移.药物分子极性及体积增大对BSA内源性荧光猝灭效应增强,与BSA中荧光性氨基酸残基之间的空间距离r增大,表观结合常数K_A增大且结合位点数n减少.结合过程的热力学参数变化表明上述相互作用过程是一个熵增加、Gibbs自由能降低的自发分子间作用过程,其中香豆素与BSA之间以疏水作用为主,而伞形花内酯、七叶内酯与BSA之间则还存在偶极-偶极作用,表明药物分子极性同样影响其与BSA间相互作用力的类型.     

Analysis of binding interaction between pegylated puerarin and bovine serum albumin by spectroscopic methods and dynamic light scattering

The interaction between bovine serum albumin (BSA) and pegylated puerarin (Pur) in aqueous solution was investigated by UV-Vis spectroscopy, fluorescence spectroscopy and circular dichroism spectra (CD), as well as dynamic light scattering (DLS). The fluorescence of BSA was strongly quenched by the binding of pegylated Pur to BSA. The binding constants and the number of binding sites of mPEG(5000)-Pur with BSA were 2.67±0.12 and 1.37±0.05 folds larger after pegylating, which were calculated from the data obtained from fluorescence quenching experiments. The enthalpy change (ΔH) and entropy change (ΔS) were calculated to be 4.09 kJ mol(-1) and 20.01 J mol(-1) K(-1), respectively, according to Van't Hoff equation, indicating that the hydrophobic force plays a main role in the binding interaction between pegylated Pur and BSA. In addition, the negative sign for Gibbs free energy change (ΔG) implies that the interaction process is spontaneous. Moreover, the results of synchronous fluorescence and CD spectra demonstrated that the microenvironment and the secondary conformation of BSA were changed. Comparing with Pur, all our data collected indicated that pegylated Pur interacted with BSA in the same way as that of Pur, but docked into the hydrophobic pocket of BSA with more accessibility and stronger binding force. DLS measurements showed monomethoxy polyethylene glycol (mPEG) have an effect on BSA conformation, and revealed that changes in BSA size might be due to increases in binding constant and the absolute values of ΔG after Pur pegylation.     

光谱法与分子模拟技术研究杨梅素与牛血清白蛋白的相互作用

利用紫外光谱、荧光光谱、红边激发荧光位移(REES)法、圆二色谱(CD)结合分子模拟技术共同研究了模拟生理条件下杨梅素与牛血清白蛋白(BSA)的相互作用,阐述了相互作用机制.分子模拟结果表明,杨梅素与蛋白在亚结构域II A的疏水腔内结合,主要作用力为疏水作用力和氢键.依据荧光猝灭法判断猝灭机制为静态猝灭,并得到不同温度下药物与蛋白相互作用的结合常数(Ka)及结合位点数(n),根据热力学参数判断出作用力类型,并且计算出杨梅素与蛋白的结合距离,与分子模拟得到的判定结果基本一致.通过紫外光谱、同步荧光光谱以及REES法获得的信息讨论了相互作用时BSA中色氨酸(Trp)微环境的变化;并利用CD谱的测定结果定量计算了BSA二级结构中α-螺旋含量的变化.     

Binding of organophosphate insecticides with serum albumin: multispectroscopic and molecular modelling investigations

The interaction between two organophosphate insecticides (monocrotophos and phosphamidon) and bovine serum albumin (BSA) under physiological conditions is investigated by UV-Vis, fluorescence (steady state, synchronous and three-dimensional) and circular dichroism spectroscopy. The UV-Vis and fluorescence spectral studies indicate the formation of complex between BSA and the insecticides. The complex formation is a spontaneous process as evidenced by negative free energy changes. The positive values of entropy changes reveal that hydrophobic forces played the major role in the interaction process, which is well supported by the molecular docking studies. Synchronous and three-dimensional fluorescence investigations suggest that there is no significant change in the conformation of BSA upon binding with the insecticides, which is strongly supported by the results of circular dichroism spectral studies.     

Site-selective binding and dual mode recognition of serum albumin by a squaraine dye

With the objective of developing small molecule based probes for proteins, interactions of polyhydroxyl-substituted squaraine dye (SQ) with bovine serum albumin (BSA) have been investigated by absorption, steady-state and time-resolved fluorescence, circular dichroism (CD), cyclic voltammetry (CV), 1H NMR, scanning electron, and tapping mode atomic force microscopic techniques. Increase in addition of BSA resulted in increase in absorbance and fluorescence quantum yields (80-fold) of SQ, along with significant bathochromic shifts in the absorption and fluorescence maxima. Half-reciprocal analysis of the absorption data gave a 1:1 stoichiometry for the complex between BSA and SQ with high association (Kass) constant of (1.4 +/- 0.1) x 106 M-1 and change in free energy of -35 kJ/mol. The complex formation was further confirmed by observation of induced CD signal corresponding to the SQ chromophore at 610 nm, upfield shift (about Deltadelta 0.1 ppm) of aromatic protons of SQ in 1H NMR spectra, and decrease in current intensity (CV) of SQ when bound to BSA. The picosecond time-resolved fluorescence studies indicated that the BSA-SQ complex exhibits biexponential decay with significantly enhanced lifetimes of 0.5 and 1.5 ns when compared to the lifetime of SQ (tau = 121 ps) in the absence of BSA. Employing displacement cum fluorimetry using site-specific binding ligands, such as dansylproline and dansylamide, indicated that SQ binds with protein selectively at site II involving hydrophobic, hydrogen bonding, and electrostatic interactions. The uniqueness of this molecular system is that it interacts with BSA selectively at site II and signals the binding event through dual mode recognition of "visual color" change and "turn on" fluorescence mechanism.     

牛血清白蛋白与金霉素结合反应的机制研究

以光谱技术与微量热技术相结合的方法研究水溶液中金霉素与牛血清白蛋白分子间结合作用的热力学性质.荧光猝灭法测得该反应的结合常数K=2.09×105L/mol,结合位点数n=1.75,微量法测得反应的焓变△rHm= -17.50 kJ/mol; 依据Forster非辐射能量转移机制,得到授体-受体间的结合距离(r1=1.67 nm, r2=1.46 nm)和能量转移效率(E1=0.41, E2=0.66). 金霉素与牛血清白蛋白分子间有较强的结合作用, 且结合力以疏水作用为主.     

A comparison study on the interaction of hyperoside and bovine serum albumin with Tachiya model and Stern–Volmer equation

The interaction between hyperoside and bovine serum albumin (BSA) was examined by fluorescence spectroscopy at 298, 304, and 310 K. The spectroscopic data were analyzed using Tachiya model and Stern–Volmer equation to determine the binding sites and apparent binding constant between hyperoside and BSA. For Tachiya model, both binding sites and apparent binding constants increased with the increasing of temperature, whereas for Stern–Volmer equation, the corresponding binding constants decreased as temperature increasing and the binding sites were independent of temperature. The positive sign of enthalpy change (ΔH) and entropy change (ΔS) suggested that hydrophobic forces played a major role in the interaction. Synchronous fluorescence spectra indicated that the conformation of protein was perturbed by the interaction of hyperoside with BSA. Moreover, the presence of metal ion affected the hyperoside-BSA binding.     

桑色素与血清白蛋白相互作用热力学行为

利用荧光光谱、紫外-可见吸收光谱、圆二色谱、分子模拟等方法,在近似生理条件下,以牛血清白蛋白(BSA)为模式蛋白质,研究了桑色素(Morin)和血清白蛋白相互作用的热力学行为及其特征。荧光光谱结果表明:Morin能有效猝灭BSA的内源荧光,猝灭机制为静态猝灭;通过van’t Hoff方程,获取了BSA与Morin结合的热力学参数(?H?、?S?、?G?等),发现Morin与BSA两者之间的相互作用是一个吉布斯自由能降低的自发过程,且氢键和范德华力是二者结合的驱动力。通过分子模拟方法,发现Morin结合在BSA分子亚结构域IIIA的疏水腔内位点II,荧光共振能量转移结果表明Morin和与BSA的两个色氨酸残基的平均距离为3.09nm。圆二色谱结果表明Morin分子的结合会引起BSA分子α-螺旋含量降低。     

Study of interaction of proton transfer probe 1-hydroxy-2-naphthaldehyde with serum albumins: a spectroscopic study

In the present work, we have studied the interaction of proton transfer probe 1-hydroxy-2-naphthaldehyde (HN12) with Human Serum Albumin (HSA) and Bovine Serum Albumin (BSA) by steady state absorption and emission spectroscopy combined with time resolved fluorescence measurements. The measured binding constant (K) and free energy change (DeltaG) indicate a stronger affinity of HN12 molecule for HSA than BSA. Steady state anisotropy, excitation anisotropy and fluorescence resonance energy transfer (FRET) studies indicate that the probe molecule resides at the hydrophobic site of the protein environment.     

阿托伐他汀钙与牛血清白蛋白的相互作用

采用电化学方法并结合紫外、红外光谱分析, 研究了近生理pH 实验条件下新型抗血脂紊乱药物阿托伐他汀钙(AC)与牛血清白蛋白(BSA)的相互作用, 探讨了BSA对AC峰电流的增敏和减敏效应. 实验发现, 在pH为7.17的NaH₂PO₄-Na₂HPO₄缓冲溶液中, AC在静汞电极上产生一个还原峰, 加入BSA后峰电位发生移动且峰电流发生变化. 电化学研究结果表明, 部分疏水性AC小分子的芳香基团通过疏水作用镶嵌到BSA疏水微区内部, 使AC与BSA之间通过疏水作用力形成一种1:1的结合物, 结合常数为1.67×10⁵. 紫外吸收光谱结果表明,AC的加入使BSA的紫外吸收峰发生红移且有减色效应, 导致BSA 构象改变、α-螺旋含量减小. 红外光谱结果显示, AC与BSA分子中氨基酸残基的硫及氮原子形成键合作用.     

Spectroscopic studies on in vitro binding of cefixime and tolcapone drugs with serum albumin

The interaction between cefixime (antibacterial) and tolcapone (Parkinson’s disease) drugs with bovine serum albumin (BSA) was investigated using several spectroscopic techniques viz. UV–Vis, fluorescence and circular dichroism. The thermodynamic parameters of the interactions were calculated, which indicated that the binding processes are spontaneous and H-bonding and van der Waals forces play a major role in BSA–cefixime interaction and hydrophobic interactions dominate BSA–tolcapone complexation. Cefixime quenches the intrinsic fluorescence of BSA by dynamic process while tolcapone through static process. The binding constant of the BSA–tolcapone complex (10⁷ L mol^?1) is found to be relatively higher than that of BSA–cefixime complex (10⁴ L mol^?1). The binding distance between BSA and cefixime and tolcapone is calculated to be 3.3 and 4.2 nm, respectively. Both fluorescence and circular dichrosim spectral studies confirmed conformational changes in BSA upon binding with these drugs. Molecular docking studies suggest the possible binding sites in the protein molecule.'     

Competitive binding of small molecules with biopolymers: a fluorescence spectroscopy and chemometrics study of the interaction of aspirin and ibuprofen with BSA

The interaction of aspirin and ibuprofen with bovine serum albumin (BSA) was studied by spectrofluorimetry under simulated physiological conditions. Both aspirin and ibuprofen quenched the intrinsic fluorescence of BSA and the binding ratios obtained were 2 : 1 for aspirin-BSA and 3 : 1 for ibuprofen-BSA interactions, respectively. The thermodynamic parameters (ΔH, ΔS and ΔG) obtained from the fluorescence spectroscopy data showed that the binding of aspirin to BSA involved van der Waals interactions and hydrogen bonds. Competitive experiments using warfarin and diazepam as site markers indicated that aspirin was mainly located in the hydrophobic pocket of site II of the protein as well as to a small extent in site I. Furthermore, the competitive interaction of the aspirin and ibuprofen with BSA, which was studied with the use of the three-way excitation-emission fluorescence spectra and a parallel factor analysis (PARAFAC) chemometrics method, showed that the competitive effect of ibuprofen was stronger than that of aspirin, i.e. the former molecule replaced the aspirin from the aspirin-BSA complex.     

Exploring the binding mechanism of dihydropyrimidinones to human serum albumin: spectroscopic and molecular modeling techniques

The binding mechanism of molecular interaction between 5-(ethoxycarbonyl)-6-methyl-4-phenyl-3,4-dihydropyrimidin-2(1H)-one (a dihydropyrimidinones derivative, EMPD) and human serum albumin (HSA) was studied using spectroscopic methods and modeling technique. The quenching mechanism was investigated in terms of the binding constants and the basic thermodynamic parameters. The results of spectroscopic measurements suggested that EMPD have a strong ability to quench the intrinsic fluorescence of HSA through static quenching procedure. The drug-protein complex was stabilized by hydrophobic forces and hydrogen bonding as indicated from the thermodynamic parameters and synchronous fluorescence spectra, which was consistent with the results of molecular docking and accessible surface area calculation. Competitive experiments indicated that a displacement of warfarin by EMPD, which revealed that the binding site of EMPD to HSA was located at the subdomains IIA. The distance between the donor and the acceptor was 4.85nm as estimated according to F?rster's theory of non-radiation energy transfer. The effect of metal ions on the binding constants was also investigated. The results indicated that the binding constants between EMPD and HSA increased in the presence of common metal ions.     

考拉维酸对人血清白蛋白结构的影响

利用多种荧光光谱法、紫外光谱法并结合分子模拟等方法,表征了模拟生理条件下一种植物药活性组分考拉维酸(KA)影响人血清白蛋白(HSA)的结构信息.同步荧光及紫外光谱证实考拉维酸的存在影响了HSA的微环境;二维及三维荧光光谱表明考拉维酸可以猝灭HSA的内源荧光,使其构象发生变化.荧光偏振的测定提供了考拉维酸与HSA作用后生成的配合物弛豫时间与聚集特性的信息,揭示KA的存在使HSA的流动性和微粘度发生变化.定量求得不同温度下(298、308和318 K)考拉维酸与HSA作用的键合参数和热力学参数.分子模拟表明考拉维酸键合位点于HSA分子的疏水腔内,并与赖氨酸Lys195和天冬氨酸Asp451形成三个氢键,与HSA的键合模式主要是疏水作用;位点竞争实验证明考拉维酸在HSA亚结构域的位点II位发生作用.另外,获得的相关物理化学参数从分子水平上揭示了考拉维酸与HSA相互作用的机制.结果表明,HSA对考拉维酸有较强的结合能力,提示人血清白蛋白对考拉维酸可起到储存和转运的作用.     

大黄酸铜(Ⅱ)配合物与血清白蛋白的相互作用

采用荧光光谱法和紫外光谱法研究了大黄酸铜配合物与牛血清白蛋白之间的相互作用.大黄酸铜配合物能显著猝灭牛血清白蛋白的内源荧光并以静态猝灭为主;计算了298 K和309 K温度下结合常数、结合位点,根据热力学参数判断大黄酸铜配合物与牛血清白蛋白之间具有较强的疏水作用力;依据F?rster的偶极-偶极非辐射能量转移理论,计算出大黄酸铜在蛋白质中结合位置与色氨酸残基间的距离为3.21 nm, 表明大黄酸铜的部分片段能够插入蛋白质分子内部;用同步荧光光谱和圆二色光谱技术探讨了大黄酸铜对牛血清白蛋白构象的影响.     

Characterization of Interaction Between Raltitrexed and Bovine Serum Albumin by Optical Spectroscopic Techniques

The interaction of raltitrexed(RTX) with bovine serum albumin(BSA) was investigated by steady state/lifetime fluorescence spectroscopy and circular dichroism(CD) spectroscopy under the simulative physiological conditions. The results of fluorescence titration reveal that RTX could strongly quench the intrinsic fluorescence of BSA via a static quenching procedure. The obtained binding constant K_A of RTX with BSA was 478630 and 44259 L/mol at 298 and 310 K, respectively. According to van’t Hoff equation, the thermodynamic parameters ΔH, ΔG and ΔS were calculated, indicating that hydrophobic forces were the predominant intermolecular forces in stabilizing the complex. The binding process was a spontaneous process, in which Gibbs free energy change was negative. According to Förster’s non-radioactive energy transfer theory, the distance r between donor(BSA) and acceptor(RTX) was 3.82 nm, suggesting that the energy transfer from BSA to RTX occurred with high probability. Displacement experiment and the number of binding sites calculation confirmed that RTX could bind to the site-I of BSA. Furthermore, the effects of pH and some metal ions on the interaction of RTX with BSA were also investigated. The results of synchronous fluorescence and CD spectra show that the RTX-BSA binding induced conformational changes in BSA.     

考拉维酸对人血清白蛋白结构的影响

利用多种荧光光谱法、紫外光谱法并结合分子模拟等方法, 表征了模拟生理条件下一种植物药活性组分考拉维酸(KA)影响人血清白蛋白(HSA)的结构信息. 同步荧光及紫外光谱证实考拉维酸的存在影响了HSA的微环境; 二维及三维荧光光谱表明考拉维酸可以猝灭HSA的内源荧光, 使其构象发生变化. 荧光偏振的测定提供了考拉维酸与HSA作用后生成的配合物弛豫时间与聚集特性的信息, 揭示KA的存在使HSA的流动性和微粘度发生变化. 定量求得不同温度下(298、308 和318 K)考拉维酸与HSA作用的键合参数和热力学参数. 分子模拟表明考拉维酸键合位点于HSA分子的疏水腔内, 并与赖氨酸Lys195 和天冬氨酸Asp451 形成三个氢键, 与HSA的键合模式主要是疏水作用; 位点竞争实验证明考拉维酸在HSA亚结构域的位点Ⅱ位发生作用. 另外, 获得的相关物理化学参数从分子水平上揭示了考拉维酸与HSA相互作用的机制. 结果表明, HSA对考拉维酸有较强的结合能力, 提示人血清白蛋白对考拉维酸可起到储存和转运的作用.     

Fluorescence quenching and molecular docking study on the binding of four hydroxyanthraquinones to FTO

In this work, the binding of four hydroxyanthraquinones (HAQs) to fat mass and obesity-associated (FTO) protein has been studied using fluorescence, UV-vis absorption and circular dichroism spectroscopy as well as molecular docking analysis. Analysis of fluorescence data showed that the binding of HAQs to FTO occurred via a static quenching mechanism. Thermodynamic analysis and molecular docking results suggested that hydrophobic force played a major role in stabilising the HAQ-FTO complex. Circular dichroism spectra indicated that the secondary structure of FTO was changed by the addition of HAQs. Results also showed that emodin had the strongest quenching and binding ability among four HAQs.