Studies on the Recognition Interaction of Rhodamine B and DNA by Voltammetry

Introduction Theinteractionofvariousmoleculessuchas anticancerdrugs,metalcomplexesandorganic dyeswithDNAhasattractedaconsiderableinter- estofsomeresearchersinrecentyears.Theinflu- encesofsmallorganicmoleculesontheDNAstruc- tureandfunctionareofgreatimportanceindrug composition,carcinogenicmechanismandgenemu- tation[1_3].Atpresent,manymethodsandmodels havebeenproposedforthestudyoftheinteraction ofDNAwithsmallmolecules,suchasspectropho- tometry,fluorometry,lightscatteringtechniques andelectro…     

博莱霉素与DNA在镍离子注入修饰电极上的相互作用 及其应用

博莱霉素(BLM)在0.1mol/LHOAc-NaOAc缓冲溶液(pH4.62)中,在Ni/GCE离子注入修饰电极上有一灵敏的还原峰,峰电位为-1.16V(vs.SCE),峰电流与BLM浓度有关。用线性扫描和循环伏安法研究体系的行为表明,体系为具有加速作用的不可逆过程,是注入的Ni加速BLM的还原。引入DNA后,BLM的峰电位为-1.15V(vs.SCE),与未加入DNA前几乎完全一致;只使峰电流降低,形成一种非电活性的结合物,求得该结合物的结合比为BLM：DNA=3：1,结合常数为β=3.16×10^16,用线性扫描和循环伏安法,并辅以紫外可见光谱法等手段研究表明,电极过程仍为不可逆过程,与未加入DNA时一样。加入DNA后,BLM的峰电流降低,可用于DNA的测定,回收率在96.8～103.9%之间.     

阿昔洛韦在硼掺杂金刚石电极上的电化学行为及其与DNA相互作用的研究

利用硼掺杂金刚石(BDD)电极通过循环伏安法和微分脉冲伏安法研究了阿昔洛韦在0.10 mol/L磷酸盐缓冲溶液(pH 7.4)中的电化学行为及其与DNA的相互作用.与玻碳电极相比,阿昔洛韦在BDD电极上的循环伏安曲线在1.17 V处的氧化峰电流更大,背景电流较低.根据峰电位随溶液pH值和扫描速率的变化趋势考察了阿昔洛韦...     

Electrochemical measurement of phenothiazine-interacted DNA

The amount of DNA was measured by using thioridazine, which would be attached to the DNA, as an electrochemical indicator. An indicator (thioridazine) solution, a test solution (DNA solution), and a poly-l-lysine solution were successively placed on a glassy carbon electrode, and the electrode was allowed to dry; DNA was immobilized on an electrode surface by the electrostatic binding between DNA and poly-l-lysine. The electrode was immersed into a buffer solution for 15 min, and then differential pulse voltammetry (DPV) was carried out: the oxidation current peak of thioridazine was observed, and its magnitude depended on the amount of DNA in the solution which was used for preparing the electrode. It could be estimated between 0.2 microg DNA (corresponds to 630 pmol nucleotides) to 20 microg DNA (63 nmol nucleotides) from the oxidation peak current of DPV.     

Electrochemical behaviors of native and thermally denatured fish DNA in the presence of cytosine derivatives and porphyrin by cyclic voltammetry using boron-doped diamond electrode

The electrochemical behaviors of native and thermally denatured fish DNA was investigated using boron-doped diamond (BDD) film electrode by cyclic voltammetry. The BDD electrode afforded us to measure weak current less than muA for the DNA solution in 100 microl. The mixture of acetic acid and sodium acetate solution (0.2 M) was used as a supporting electrolyte. Two oxidation peaks were observed at about +1.1 V and +1.3 V at pH 4.6 for thermally denatured fish DNA. This is due to the oxidation of guanine and adenine in the denatured fish DNA, respectively. In contrast, the native fish DNA showed ill-defined peaks at +1.1 V. Furthermore, the electrochemical behaviors of thermally denatured fish DNA were studied in the presence of cytosine, cytidine, cytidine-5-monophosphate, tetrakis(1-methypyridinium-4-yl)porphyrin (H(2)(TMPyP)(4+)) and Ru(II)(TMPyP)(4+). The oxidation peak intensity at +1.1 V gradually decreased with the increase of the concentrations of the above compounds. Based on the above studies, electrochemical behaviors of the thermally denatured fish DNA at BDD electrode is discussed.     

Utilization of Pyronine B as Voltammetric Probe for the Determination of DNA

Abstract

The electrochemical behaviors of the interaction of pyronine B (PB) with DNA were investigated on the mercury drop working electrode. In pH 2.0 Britton‐Robinson (B‐R) buffer solution, PB can be easily reduced on the mercury electrode and had a well‐defined voltammetric reductive wave at ?0.86 V (vs. saturated calomelelectrode, SDE). On the addition of DNA into the PB solution, the reductive peak current of PB decreased with the positive movement of the peak potential and without the appearance of new peaks. The result showed that a new supramolecular complex was formed via intercalation of PB with DNA, which can't be reduced on the Hg electrode. The conditions of interaction and the electrochemical detection were carefully investigated. Under the optimal conditions the decrease of peak current was proportional to the concentration of DNA in the range of 1.0～30.0 mg/L with the linear regression equation as ΔIp″(nA)=51.84C (mg/L)–94.97 (n=13, γ=0.993) and the detection limit was 0.90 mg/L. The interaction mechanism was discussed with the aggregation of DNA‐PB supramolecular complex and the stoichiometry of the supramolecular complex was calculated with the binding number as 3 and the binding constant as 1.61×10¹⁵.     

Electrochemical Studies of Pirarubicin and Its Interaction with DNA at a Co／GC Ion Implantation Modified Electrode

IntroductionIon implantation is a new material surfacemodification technique.It has been also applied tostudying the electrochemical behaviors of organicdrugs and biological materials as well as their de-terminations. This method offers good stability,reproductivity and catalytic activity[1] .Pirarubicin( THP) is an active highly effective and new antitu-moral anthracycline antibiotic,which has gainedwidespread clinical use in the chemotherapeutictreatment of a variety of human cancers.The d…     

Voltammetric Behavior of the Alizarin Red S Interaction with DNA and Damage to DNA

The electrochemical behavior and the interaction of alizarin red S (ARS) with calf thymus DNA was investigated on a bare glassy carbon electrode (GCE) and DNA modified GCE (DNA/GCE), respectively. ARS showed a pair of redox peaks at ?0.445 V and ?0.414 V on a bare GCE. On addition of DNA into the ARS solution, the peak current of ARS decreased and the peak potential positively shifted, but without new redox peaks appeared. The ARS reduction peak current increased with immersion time on a DNA/GCE. The results showed that ARS could interact with DNA molecules by intercalative binding mode. The equilibrium constant, binding number and the ratio of binding constant for oxidized and reduced ARS forms were obtained. The DNA damage was directly detected by appearance of guanosine and adenosine bases oxidation signal. The influence of experimental conditions on DNA damage extent was discussed in detail.     

Studies on the electrochemical behavior of cytochrome c and its interaction with DNA at a Co/GC ion implantation modified electrode

The electrochemical behavior of cytochrome c (cyt c) and its interaction with DNA at a Co/glassy carbon (GC) ion implantation modified electrode were studied by linear sweep and cyclic voltammetry. In 0.005 mol dm(-3) Tris-0.05 mol dm(-3) NaCl buffer solution (pH = 7.10), a sensitive reduction derivative peak of cyt c was obtained by linear sweep voltammetry. The peak potential was 0.032 V (SCE). The peak current was proportional to the concentration of cyt c. The electrode process was quasi-reversible with adsorption. The electrode reaction rate constant k and the electron transfer coefficient a of cyt c were 4.42 s(-1) and 0.47, respectively. AES and XPS experiments showed that Co was implanted into the surface of the GC electrode (GCE). The implanted Co formed Co-C, which catalyzed the reduction of cyt c. The reaction of DNA with cyt c led to an electrochemically active complex, which resulted in an increase in the reduction current of cyt c. After adding DNA into the solution containing cyt c, the electrode process was still quasi-reversible with adsorption.     

二茂铁及其与DNA复合物的电化学行为

在Tris-NaCl(pH=7.2)缓冲溶液中, 应用循环伏安法、微分脉冲伏安法、旋转圆盘电极实验、电化学阻抗谱等技术研究了二茂铁在旋转碳纳米管(CNT)修饰电极上的电化学行为及其与小牛胸腺DNA的相互作用. 结果表明, 二茂铁及其与双链DNA的电活性产物在静止的CNT修饰电极上均呈现一对基本可逆的氧化还原峰；在旋转电极上呈现出明显的极限扩散电流, 电化学阻抗谱呈现一个压扁的半圆. 二茂铁与DNA的作用在扩散控制过程中表现为峰电流和极限扩散电流随DNA浓度增大而减小；电化学控制过程则表现为电化学反应电阻随DNA浓度增大而增大, 条件电位下的速度常数也有一定程度的减小.     

Voltammetric Detection of the DNA Interaction with Toluidine Blue

Binding reactions of toluidine blue (TB) with herring fish DNA in pH 6.0 Britton–Robinson (B–R) buffer solution have been investigated by cyclic voltammetry and linear‐sweep voltammetry at a glassy carbon electrode. TB has a couple of well‐defined redox peaks. The addition of DNA into the TB solution resulted in the decrease of the redox‐peak currents and the shift negatively of the anodic peak potential. The values of the electrochemical parameters such as the electron number of the electrochemical reaction, the electron transfer coefficient and the electrochemical reaction standard rate constant in the absence and presence of DNA, as well as the values of binding constant and binding ratio of DNA with TB were obtained. Almost unchanged values of the electrochemical parameters in the absence and presence of DNA show that nonelectroactive complexes were formed when TB interacted with DNA. DNA concentration can be determined by the decrease of the peak current of TB. The binding mode of TB with DNA was discussed.     

Electrochemical DNA biosensor for the determination of benzo[a]pyrene–DNA adducts

The metabolites of the environmental pollutant, benzo[a]pyrene (BaP) are carcinogenic and mutagenic agents. Thus, the determination of additional products (adducts) of the interaction between DNA and BaP, attracts great interest in cancer research.

In this study, the determination of interaction between BaP and calf thymus double-stranded DNA (dsDNA) was performed by using differential pulse voltammetry (DPV) and constant current chronopotentiometric stripping analysis (PSA) in connection with carbon paste electrode (CPE) or glassy carbon electrode (GCE). As a result of interaction of BaP with dsDNA, the signal obtained from the oxidation of guanine decreased and a new adduct signal at a more positive potential appeared. This new peak is attributed to the formation of an adduct from the interaction of guanine with BaP. The chemically prepared anti-7,8,9,10-tetrahydrobenzo[a]pyrene-7,8-diol-9,10-epoxide (BPDE) adduct by using iodine oxidation was analyzed and the electrochemical signal of the adduct was observed. When the dsDNA modified GCE was immersed into various concentrations of BaP solution, the oxidation peak of guanine decreased and the adduct peak increased with the increasing BaP concentration. The partition coefficient was also obtained from the peak of BaP with dsDNA. The results revealed that the formation of adducts could be determined by using electrochemical DNA biosensors, which are fast, simple and cost-effective devices. Furthermore, this study promises that the analysis of other important adducts would benefit from the introduction of electrochemical methods.     

Electrochemical Study of the Interaction Mechanism of Proflavine (PF) with DNA Using Carbon Paste (CPE) and Hanging Mercury Drop (HMDE) Electrode

Abstract

Proflavine binds with DNA in a complicated manner. This work involves the electrochemical study of this interaction using differential pulse voltammetry at a carbon paste electrode (CPE) and alternating current voltammetry at a hanging mercury drop electrode (HMDE). At the CPE the peak current intensity at 1.0 V (corresponding to the oxidation of the guanine residues) decreased by increasing the concentration of proflavine. At the HMDE, a decrease in the current intensity of the DNA peak at ? 1.2 V (corresponding to segmental desorption) was also observed by increasing the concentration of proflavine. These results confirmed, electrochemically, that proflavine intercalates within the DNA double helix and changes its conformation.     

Electroanalytical study of SYBR Green I and ethidium bromide intercalation in methylated and unmethylated amplicons

This work involves the electrochemical study of the interaction of SYBR Green I (SG) with native DNA using differential pulse voltammetry at a carbon paste electrode (CPE) and alternating current voltammetry at a hanging mercury drop electrode (HMDE). At the CPE the peak current intensity at 1.0 V decreased by increasing the concentration of SG. At the HMDE, a decrease in the current intensity of the DNA peak at −1.2 V was also observed by increasing the concentration of SG. These results electrochemically confirmed that SG intercalates within the DNA double helix and changes its conformation. Through the present work the differentiation of differently methylated analytes was achieved by application of alternative current and differential pulse voltammetric techniques. Amplicons (PCR products) corresponding to the GC-rich p53 exon 5 containing cytosine and its methylated analogue, synthesized by substituting 60% of cytosine by 5-methyl-cytosine, were amplified and investigated electrochemically in the presence of SG and ethidium bromide (EtBr) by differential pulse voltammetry. Considerable peak current differences were observed in the presence of SG and EtBr for unmethylated exon 5 vs. methylated. Therefore, both SG and EtBr could serve as electrochemical probes for identifying different DNA conformations.     

Comparison of the voltammetric studies at mercury and glassy carbon electrodes for the interaction of lumichrome with DNA and analytical applications

The determination of the interaction between lumichrome (LC), one of the products of decomposition of the biologically important flavins, and calf thymus double-stranded DNA was performed by using cyclic voltammetry (CV) and differential pulse stripping voltammetry (DPSV) in connection with a hanging mercury drop electrode (HMDE) or glassy carbon electrode (GCE). The nature of the process taking place at both electrode surfaces was clarified. It was found that the addition of DNA to a buffered LC solution results in the decrease of redox peak currents with changes in the peak potentials at both electrodes. We assume that LC interacting with DNA produces an electrochemically inactive supramolecular complex via intercalation. There was a difference between the electrochemical parameters determined at the HMDE and those at the GCE. The binding constants ( K) of the LC-DNA complex at HMDE and GCE were determined through the changes of peak currents and their values at the 10(5) level and 10(4) level with each nucleotide residue of DNA binding one LC molecule, respectively. Furthermore, the calibration graph for the determination of DNA was obtained by the decrease in the DPSV peak current of LC in the presence of DNA. Different variables, such as the concentration of LC, the accumulation time and solution conditions, were studied and optimised to maximize the sensitivity; in addition, the detection limit and the reproducibility were determined.     

Electrochemical investigation on the interaction of diclofenac with DNA and its application to the construction of a graphene-based biosensor

We have investigated the interaction between diclofenac and deoxyribonucleic acid (DNA) by the electrochemical method. On glassy carbon electrode, the voltammetric curve of diclofenac showed an oxidation peak, which was obviously influenced by the addition of DNA. Accordingly, a series of electrochemical experiments were carried out to elucidate the interaction between diclofenac and DNA. Based on the diclofenac–DNA interaction, a biosensor for diclofenac was developed. When a film of DNA was immobilized on the electrode surface, DNA showed an oxidation signal promoted by graphene oxide. Due to the diclofenac–DNA interaction, the peak current of DNA decreased and the peak potential shifted positively with increasing the concentration of diclofenac. The response of the biosensor was linear to the concentration of diclofenac in the range of 1 to 130?μM. Using such a biosensor, the photodegradation of diclofenac was successfully monitored.     

镍离子注入修饰电极上米托蒽醌与DNA相互作用的电化学研究

研究了在镍离子注入修饰电极和0.05mol/LTris-0.5mol/LNaCl缓冲溶液(pH=7.1)中,米托蒽醌(MX)与DNA作用的电化学.在37℃恒温1.5h条件下,MX与DNA形成一种非电活性的结合物,使MX峰电流降低,其结合比n(MX):n(DNA)=2:1,结合常数为1.61×10¹²,电子转移系数为0.41,电极反应速率常数0.33s^-1.加入DNA后,MX峰电流降低,据此,可以测定DNA.     

检测痕量Hg~(2+)的DNA电化学生物传感器

通过自组装方法将修饰有二茂铁基团的富T序列DNA分子(DNA-Fc)固定在金电极表面,得到了一种基于DNA修饰电极的电化学汞离子(Hg2+)传感器.当溶液中有Hg2+存在时,Hg2+可与修饰电极上DNA的T碱基发生较强的特异结合,形成T-Hg2+-T发卡结构,使DNA分子构象发生改变,其末端具有电化学活性的二茂铁基团远离电极表面,电化学响应随之发生变化.示差脉冲伏安法(DPV)结果显示:DNA末端二茂铁基团的还原峰在0.26V(vs饱和甘汞电极(SCE))附近,峰电流随溶液中Hg2+浓度的增加而降低;Hg2+浓度范围在0.1nmol·L-1-1μmol·L-1时,电流相对变化率与Hg2+浓度的对数呈现良好的线性关系.该修饰电极对Hg2+的检测限为0.1nmol·L-1,可作为痕量Hg2+检测的电化学生物传感器.干扰实验也表明,该传感器对Hg2+具有良好的特异性与灵敏度.     

Linear sweep voltammetric studies on the interaction of brilliant cresyl blue with nucleic acids and its analytical application

In this paper, the interaction of brilliant cresyl blue (BCB) with nucleic acids was studied and further applied for the microdetermination of nucleic acids. In aqueous Britton-Robinson (B-R) buffer solution, BCB can be easily reduced on the hanging mercury drop electrode (HMDE) and had a sensitive voltammetric reduction peak at -0.09 V (vs. SCE). The reduction peak current of BCB could be greatly decreased by the addition of DNA. The results of voltammetric measurements had indicated that a binding reaction was occurred between BCB and DNA and a new supramolecular complex was formed, which resulted in the decrease of the diffusion coefficient of the reaction solution and the decrease of the reduction peak current correspondingly. The conditions of interaction and the electrochemical detection were carefully investigated. Under the selected conditions, the calibration curves for the detection of fish sperm (fs)DNA, calf thymus (ct)DNA and yeast (y)RNA were established. The linear range of this assay was 1.0-30.0 microg/mL for fsDNA, 1.0-45.0 microg/mL for ctDNA and 1.0-25.0 microg/mL for yRNA, respectively. The detection limits were 0.38 microg/mL fsDNA, 0.43 microg/mL ctDNA, 0.64 microg/mL yRNA. The interaction parameters such as the equilibrium constant and the binding number were calculated by electrochemical method. The results showed that the 2:3 type of complex was formed in the fsDNA-BCB complex with the binding constant as 2.51 x 10(7). The proposed method was further applied to the synthetic samples determination with satisfactory results.     

二茂铁与DNA作用的表面电化学研究

在研究碳纳米管电极上二茂铁电化学性质的基础上,应用二茂铁修饰电极和DNA修饰电极研究了二茂铁与小牛胸腺DNA的相互作用。结果表明,修饰电极上的二茂铁都呈现一对明显的氧化还原峰,二茂铁修饰电极与DNA的作用表现为氧化还原峰电流减小,与溶液中的两者作用情况类似,而DNA修饰电极与二茂铁的作用则表现为氧化还原峰电流增大。扫描电镜结果也证实了两种修饰电极上的二茂铁与DNA间的作用。此外,还讨论了二茂铁与DNA间的作用模式。