细胞蛋白质组学和代谢组学整合策略表征散斑型BTB/POZ蛋白质突变调控的关键代谢通路

散斑型BTB/POZ蛋白（SPOP）是前列腺癌中突变率最高的蛋白质之一。该研究通过整合细胞蛋白质组学和代谢组学的方法，揭示SPOP突变引起的代谢紊乱及其调控的代谢通路。首先，系统地研究了LNCaP SPOP野生型及突变型高表达细胞中的代谢变化。代谢组学结果显示，SPOP野生型和突变型（SPOP_Y87N和SPOP_F133L）导入的LNCaP细胞在偏最小二乘法判别分析（PLS-DA）得分图上得到了很好的区分。进一步通过单因素方差分析发现，SPOP突变引起富马酸、苹果酸、柠檬酸、天冬氨酸和天冬酰胺等代谢物含量的增加。蛋白质组学共发现909种蛋白质在两种LNCaP SPOP突变体细胞中发生变化。分别对差异代谢物和差异蛋白质进行通路富集分析，发现三羧酸循环、氨酰基-转运核糖核酸生物合成在代谢组学和蛋白质组学分析中都发生了明显改变。最后，在SPOP敲除的Du145细胞中验证了上述研究结果。该研究证明SPOP突变可促进三羧酸循环。     

气相色谱-质谱对青霉素发酵中玉米浆潜在标志物的研究

基于气相色谱-质谱(GC-MS)结合正交偏最小二乘判别分析法(OPLS-DA),建立了筛选玉米浆中影响青霉素发酵效价的潜在标志物的方法.利用GC-MS获得玉米浆中44种物质,经过标准化、Pareto预处理后,通过OPLS-DA对样本进行模式识别,根据模型的载荷图和变量重要性因子(VIP)筛选出9个潜在的标志物,即亮氨酸、5-酮脯氨酸、天冬氨酸、柠檬酸、酪氨酸、丝氨酸、赖氨酸、苏氨酸和葡萄糖.结果表明,这些物质与青霉素的初级代谢和次级代谢密切相关,可以作为筛选青霉素发酵优质原料的潜在质量指标.     

微流控芯片－质谱联用技术在细胞代谢与药物代谢中的研究进展

细胞代谢与药物代谢是新药筛选和研发的关键环节,在推动人类大健康发展进程中具有重要意义。通常情况下,细胞代谢和药物筛选以传统细胞培养测定研究为主,多为静态培养条件,无法很好地模拟体内细胞动态微环境。微流控芯片－质谱联用是近年发展起来的一种新型高通量分析技术。微流控芯片模块可高度模拟细胞体内动态微环境,与质谱联用可实时在线检测样品物质,具有高效、快速、简便、样品和试剂消耗低等特点,广泛应用于细胞代谢和药物代谢分析,有利于加速药物筛选研发进程。该文重点综述了微流控芯片－质谱联用技术及其在细胞代谢和药物代谢方面的应用概况,并对目前存在的局限性进行了讨论和展望,以期为微流控芯片－质谱联用技术在新药研发与细胞分析领域的发展提供参考。     

清香木叶挥发油成分及其抑菌作用

采用水蒸汽蒸馏法(SD)提取清香木叶挥发油、采用GC-MS联用技术分析了挥发油的化学成分,采用杯碟法和Alamar blue法检测了其抑菌和抗肿瘤活性.结果表明,从清香木叶挥发油中分离鉴定出29种化合物.占挥发油总质量的99.54%.清香木叶挥发油中的活性物质对大肠杆菌(E.coli)、金黄色葡萄球菌(S.aureus)、红酵母(R.glutinis)均有较强的抑制活性;对体外人非小细胞肺癌(NCI-H460)细胞核有显著的抑制作用,且其抑制作用与浓度呈正相关,当质量浓度达到0.1 g/L时,抑制率达92.56%.     

V-ras基因点突变与转化细胞恶性表型的研究

为进一步确定ras基因突变与肿瘤恶性表型的关系,我们构建了一系列的v-ras突变体并将其导入NIH 3T3细胞,观察这些细胞的恶性表型,如致瘤性,转移能力及细胞膜组织相容性抗原(MHC-I)的表达水平。实验证明不是全部具有形态转化的细胞都能在正常的Balb/c小鼠致瘤和形成远端转移。ras基因不仅能影响细胞的形态、致瘤性、转移能力,而且还通过调节MHC-I的表达水平来影响ras转化细胞的恶性表型。     

一个HBsAg基因在大肠杆菌中的强表达系统

利用筛选启动基因的载体系统,从大肠杆菌染色体DNA中获得一个启动基因片段。在它的控制下HBsAg基因在大肠杆菌中有较强的表达。通过抗-HBs亲和层析柱分离纯化了表达产物。用琼脂糖双扩散免疫分析法和聚丙烯酰胺——SDS凝胶电泳对分离纯化的表达产物进行了鉴定。     

污染水产去甲基化表观遗传毒性EGFP评价方法

pEGFP-C3质粒经过体外人工甲基化处理后,被转染进入HepG2细胞以构建重组细胞株．以5-AZA为阳性去甲基化毒物与重组细胞共培养,通过亚硫酸氢钠测序法定量检测EGFP基因启动子区甲基化状态,通过实时定量PCR检测EGFP基因表达,借助流式细胞术和荧光摄片定量检测共培养细胞的绿色荧光强度,在DNA甲基化、EGFP基因mRNA表达、GFP蛋白等多个层次研究5-AZA染毒处理与其去甲基化能力和荧光表达改变的响应关系．对天津污染水产的去甲基化能力进行了实际样品测试．结果表明,5-AZA与重组细胞的DNA甲基化、基因表达、蛋白产物变化之间存在显著关联,具有较低的检出浓度和良好的重复性．天津污染海域的水产去甲基化能力较强．本文初步建立了一种污染物去甲基化表观遗传毒性评价方法．     

细胞不同代谢类型的热化学研究Ⅰ.生长、非生长及内源代谢水平的量热测定

细胞是生命的基本单位．对其代谢过程能量输出水平的直接测定，对细胞生理学来说是重要的实验基础数据，对于生物生理和研究能量代谢方面也有一定的理论意义．当然细胞的多样性及其代谢过程的复杂性使这一研究工作相当困难·作为开展研究的第一步我们选择便于培养处理的单细胞生物大肠杆菌作为研究对象，并对其所进行时三种基本代谢类型29Llxi：L谢；非生长依队和内派代谢分别进行研究，本文分别测定了＊烟三种不同类型代谢的热功率输出水平，得到了单个细胞在上述代谢过程热功率输出的定量数据．实验结果表明，不同类型代谢的能量输出水平…     

代谢组学法分析骨髓抑制模型小鼠血清小分子代谢产物

骨髓抑制是恶性肿瘤患者化疗后常见的症状,研究骨髓抑制造成体内代谢产物的变化可以为诊断骨髓抑制病症发展状况及采用药物治疗提供思路。采用雄性BalB/C小鼠腹腔注射环磷酰胺建立骨髓抑制模型,通过气相色谱-质谱(GC-MS)对正常与造模小鼠血液代谢产物进行指纹图谱分析,然后采用主成分分析(PCA)和正交偏最小方差判别分析(OPLS-DA)对代谢组学数据进行多维统计分析。与对照组相比,骨髓抑制模型小鼠血浆中潜在的差异表达代谢标志物有15个,其中葡萄糖-1-磷酸、对硝基苯酚、乙酰苯胺、可的松、烟酰胺、马钱苷、咖啡酸、亚油酸和油酸这9种物质的表达差异有统计学意义(P0.05)。结果表明,代谢产物可作为骨髓抑制研究中的重要标记物,有助于揭示化疗所致骨髓抑制的发病机制,判断疾病发展阶段以及后续治疗手段的有效性。     

胞质因子对人早幼粒白血病细胞恶性表型和基因表达的调控作用

本文利用胞质杂交的细胞工程手段,研究人早幼粒白血病细胞突变株在添加小鼠网织红细胞胞质后的细胞恶性表型表达状态。实验结果表明,HGPRT~-人早幼粒白血病细胞突交株(HL-60-AR)与小鼠网织红细胞融合所形成的胞质杂交细胞,其恶性程度较亲本瘤细胞显著降低,它们在体外软琼脂培养基上不能形成集落,在裸鼠体内丧失致瘤能力,同时细胞增殖率降低,细胞分裂指数下降,DNA合成速率减慢。利用c-myc癌基因探针的分子杂交技术,未检测到胞质杂交细胞存在相当于c-myc基因特异的同源序列mRNA,提示杂交细胞癌基因表达严重受抑。对杂交细胞珠蛋白在翻译和转录水平上的表达分别进行探测,结果一致显示胞质杂交细胞中人珠蛋白基因受到激活。上述结果提示,小鼠网织红细胞中存在能调控人肿瘤细胞恶性表型和基因表达状态的胞质因子。     

Development of a quantitative, validated capillary electrophoresis-time of flight-mass spectrometry method with integrated high-confidence analyte identification for metabolomics

A CE-MS method was developed and validated for the quantitative analysis of negatively charged metabolites by making use of the high mass accuracy and the quantitation capabilities of a TOF mass analyzer in combination with automated feature extraction and database search. Metabolites of the central carbon metabolism were quantified with an LOD and lower LOQ (LLOQ) of 0.2-2 and 1-4 microM, respectively. The method was used to elucidate metabolic changes in the Escherichia coli deletion mutant PntAB-UdhA that lacks nicotinamide nucleotide transhydrogenase function, under both stationary and exponential growth conditions. The reproducibility of metabolite extraction and CE-TOF-MS analysis ranged from 3.7 to 22.7 and 7.9 to 22.6%, respectively, while the biological variance was 3.4-31.3%. We observed significant differences in metabolite abundance, particularly in the citrate cycle, between wild-type and mutant E. coli. Overall, more than 600 features were found by automated feature detection, which resulted in approximately 150 high-confidence metabolite identifications. Concomitant analyses with two different GC-MS methods allowed not only crossvalidation of the quantitative results obtained by the various methods, but also led to a more comprehensive coverage of the E. coli metabolome.     

Direct measurement of isotopomer of intracellular metabolites using capillary electrophoresis time-of-flight mass spectrometry for efficient metabolic flux analysis

We have developed a metabolic flux analysis method that is based on (13)C-labeling patterns of the intracellular metabolites directly measured by capillary electrophoresis time-of-flight mass spectrometry (CE-TOFMS). The flux distribution of the central carbon metabolism in Escherichia coli was determined by this new approach and the results were compared with findings obtained by conventional GC-MS analysis based on isotopomer of the proteinogenic amino acids. There were some differences in estimation results between new approach using CE-TOFMS and conventional approach using GC-MS. These were thought to be attributable to variations in measured mass distributions between amino acids and the corresponding precursors and to differences in the sensitivity of the exchange coefficients to mass distributions. However, our CE-TOFMS method facilitates high-throughput flux analysis without requiring complicated sample preparation such as hydrolysis of proteins and derivatization of amino acids.     

亲水作用色谱/质谱联用方法用于大肠杆菌代谢组分析

建立了两性离子亲水作用色谱/质谱联用方法用于大肠杆菌胞内极性代谢物的分离分析。选取52个代表性极性物质对方法进行考察,发现此方法有较好的线性范围,且大部分物质最低检测限均在ng/mL数量级。平行制备6份样品进行分析,结果显示85%以上代谢物峰面积的RSD值小于30%。6个内标物质在低、中、高3个浓度下的日内精密度（RSD）均小于20%,大部分物质的相对回收率都在可接受的范围内（70%~130%）。把此方法用于yfcC基因改造的3株大肠杆菌代谢组分析,发现一些小肽、氨基酸、核苷、有机酸、磷脂等物质在基因改造后发生明显变化。此研究结果表明,建立的两性离子亲水作用色谱/质谱方法检测到的物质化学性质分布广,跨越了极性磷脂到小肽的各个范围,且具有良好的重复性、稳定性和适用性。     

Comprehensive metabolite profiling in distinct chemotypes of Commiphora wightii

Commiphora wightii (Arn.) Bhandari, known as guggul, produces a medicinally important gum resin which is used extensively by Ayurvedic physicians to treat various ailments. However, most of the studies on C. wightii have been limited to its gum resin. Comprehensive metabolic profiling of leaves, stem and gum resin samples was undertaken to analyse aqueous and non-aqueous metabolites from three distinct chemotypes (NBRI-101, NBRI-102 and NBRI-103) shortlisted from different agro-climatic zones. GC-MS, HPLC and NMR spectroscopy were used for comprehensive metabolomics. Multivariate analysis showed characteristic variation in quinic and citric acids, myo-inositol and glycine (aqueous metabolites) and 2,6-di-tert-butyl-phenol, trans-farnesol and guggulsterones (non-aqueous metabolites) amongst the three chemotypes. Quinic acid, citric acid and myo-ionositol were detected in substantial quantities from leaves and stem samples which provide opportunities for novel nutraceutical and pharmaceutical formulations. Quinic acid, from the leaves, was identified as a marker metabolite for early selection of high guggulsterones-yielding cultivars.     

Mutagenicity of dimethylated metabolites of inorganic arsenics

The genotoxic effects of dimethylarsinic acid (DMAA), one of the main metabolites of inorganic arsenics in mammals, and its further metabolites were investigated using Escherichia coli B tester strains. When H/r30R (wild-type; Exc+Rec+) and Hs30R (uvrA-; Exc-Rec+) cells were incubated with DMAA for 3 h in liquid NB medium, many more revertants appeared in sealed tubes than in the control, but this was not the case in unsealed tubes, suggesting that volatile metabolites of DMAA caused the mutagenesis. By gas chromatography-mass spectrometry (GC-MS), dimethylarsine and trimethylarsine, known to be volatile metabolites in microorganisms, were detected in the gas phase of DMAA-added tester strain cell suspensions in sealed tubes. Among these arsines, dimethylarsine was mutagenic in WP2 (wild-type; Exc+Rec+) and WP2uvrA (uvrA-; Exc-Rec+), while trimethylarsine was not. The mutagenesis induced by dimethylarsine required oxygen gas in the assay system; the number of revertants markedly increased in an oxygen-replaced system and diminished in a nitrogen-replaced one. These results suggest that the reaction product(s) between dimethylarsine and molecular oxygen is responsible for the mutagenesis. The significance of this mutagenesis in the genetoxic action of inorganic arsenics is discussed.     

通过柠檬酸改性提高载银活性炭的抗菌性能

通过负载柠檬酸对活性炭进行改性,用N2吸附法测定活性炭的比表面积,用AAS、SEM、XRD测试技术分析了银在活性炭上的吸附和分布,并研究了载银活性炭的抗菌性能。结果表明,负载柠檬酸使活性炭的比表面积下降约24%,但载银后活性炭的比表面积增大。柠檬酸改性为[Ag(NH3)2] 的还原吸附提供更多的活性点,使银的吸附速率加快,吸附量提高约25%,表面的银颗粒变得非常密集,粒径减小,且颗粒均匀,因此抗菌性能显著增强,其中对金黄色葡萄球菌的杀灭效果明显优于对大肠杆菌的,同时对于高分散Ag/C催化剂的制备及银的回收也具有重要的价值。     

Separation and detection of amino acid metabolites of Escherichia coli in microbial fuel cell with CE

In this work, CE‐LIF was employed to investigate the amino acid metabolites produced by Escherichia coli (E. coli) in microbial fuel cell (MFC). Two peptides, l ‐carnosine and l ‐alanyl‐glycine, together with six amino acids, cystine, alanine, lysine, methionine, tyrosine, arginine were separated and detected in advance by a CE‐LIF system coupled with a homemade spontaneous injection device. The injection device was devised to alleviate the effect of electrical discrimination for analytes during sample injection. All analytes could be completely separated within 8 min with detection limits of 20–300 nmol/L. Then this method was applied to analyze the substrate solution containing amino acid metabolites produced by E. coli. l ‐carnosine, l ‐alanyl‐glycine, and cystine were used as the carbon, nitrogen, and sulfur source for the E. coli culture in the MFC to investigate the amino acid metabolites during metabolism. Two MFCs were used to compare the activity of metabolism of the bacteria. In the sample collected at the running time 200 h of MFC, the amino acid methionine was discovered as the metabolite with the concentrations 23.3 μg/L.     

Calf primary hepatocyte culture as a tool for anabolic steroid metabolism studies.

Calf hepatocyte cultures were developed for the predictive analysis of in vivo xenobiotic biotransformations. The goal of this work was to show the feasibility of a system based on calf primary hepatocyte cultures using radiolabelled molecules to study xenobiotic metabolism rather than to study exhaustively the metabolism of a particular steroid. 19-Nortestosterone was chosen as a model substrate because of its relatively well known metabolism in the bovine species. Incubation of a mixture of tritiated and non-tritiated 19-nortestosterone was investigated in cell culture in order to target the biosynthesized metabolites. After extraction and purification, some of the in vitro metabolite structures were elucidated by GC-MS and compared with the main urinary metabolites detected in vivo after intramuscular injection of 19-nortestosterone into a calf. 19-Norepitestosterone, the main in vivo metabolite, was identified in vitro. However, the main in vitro metabolites were mostly in an oxidized form (4-estrene-3,17-dione, hydroxy-4-estrene-3,17-dione).     

气相色谱-质谱联用技术分析大气细颗粒物对小鼠肺组织代谢轮廓的影响

建立了基于气相色谱-质谱联用技术(GC-MS)分析大气细颗粒物(PM2.5)滴注对小鼠肺组织代谢轮廓的影响的研究方法.通过分析肺组织细胞内代谢物的变化,研究不同浓度PM2.5对小鼠肺组织代谢的毒性机制.鼻腔分别滴注0、7.5、20.0和37.5 g/L的PM2.5悬液,提取肺组织胞内物质,预处理后进行GC-MS分析,结合主成分分析法(PCA)、偏最小二乘判别分析法(PLS-DA)进行数据解析,通过PLS-DA得分图可将不同PM2.5染毒浓度下的肺组织胞内物质明显区分.运用PLS-DA载荷图及模型的变量重要性因子(VIP)值,发现了7种代谢物可作为区别不同浓度PM2.5下代谢组的潜在生物标志物,分别为丙氨酸、缬氨酸、亮氨酸、鸟氨酸、延胡索酸、柠檬酸、嘌呤(p<0.01).代谢途径分析结果表明,PM2.5滴注使小鼠肺组织受到氧化损伤,氧化应激反应增强,抑制了三羧酸循环(TCA循环)及嘌呤代谢.本研究为深入解析PM2.5致毒机理提供了新的方法及理论依据.