Theoretical Study on Dihydrogen Bonds of NH3BH3 with Several Small Molecules

运用量子化学从头算方法研究了NH3BH3与HF、HCl、HBr、H2CO、H2O和CH3OH形成的双氢键B–H???H–X (X＝F、Cl、Br、C、O)．计算结果表明,在所有体系中双氢键的形成使得BH和HX键长增长且伸缩振动频率红移(在H2CO体系中CH键长减小,频率蓝移)．除了NH3BH3,在每个体系中还存在传统氢键N–H???X．对NH3BH3及其与卤化氢的复合体系,分子间超共轭σ(BH)–σ*(XH)导致了XH键的红移;对H2CO体系,分子内超共轭减小导致CH键蓝移;在其他体系中,传统的红移氢键N–H???X是主要的,双氢键较弱,XH键的红移只是传统氢键的次级效应．在所有这些体系中,BH键红移由两个因素造成：BH键发生负的重极化与负的重杂化,分子间超共轭导致σ(BH)成键轨道电子密度减小．     

HOX(X=F,Cl)二聚体红移氢键的理论研究

用理论方法研究了二聚体HOX(X=F,Cl)分子间氢键,在B3LYP/6-31+G(d,p)、 B3LYP/6-311++G(d,p)、MP2/6-31+G(d,p)和MP2/6-311++G(d,p)水平上,利用标准方法和均衡校正方法对二聚体进行了几何优化、振动频率和相互作用能的计算。同时,利用电子密度拓扑分析和自然键轨道分析对红移氢键的本质进行了分析。研究表明：分子间O—H…O和O—H…X(X=F,Cl)氢键的形成使二聚体中O—H键伸长,伸缩振动频率减小,形成红移氢键。NBO分析表明,电荷转移效应占优势,因此形成O—H…O和O—H…X(F,Cl)红移氢键。     

拉曼和全反射红外光谱法对四氢呋喃-水体系分子间氢键的研究

利用拉曼和全反射红外光谱法研究了四氢呋喃-水体系分子间氢键随着水含量增加的变化。对于单一四氢呋喃组分,分子间氢键存在于C—H键与C—O键之间;随着水含量的增加,四氢呋喃分子间氢键逐渐被四氢呋喃-水分子间氢键取代,C—O键的红外高频位移证明了这一过程。当水含量达到4.6%(体积分数)左右时,C—C—C—C环呼吸振动峰随水含量变化曲线出现转折点,该点组分中四氢呋喃和水的含量与共沸物基本一致,由此可见少量水对四氢呋喃物理性能的影响主要基于两者之间氢键作用方式的变化。     

1,1,3,3-四甲基脲—溶剂氢键复合物的理论研究

采用密度泛函理论在B3LYP/6-311++G(d,p)水平上对水、苯胺、氯仿与1,1,3,3-四甲基脲分子形成的1:1气相氢键复合物进行计算研究.结果表明,三种物质与1,1,3,3-四甲基脲形成的复合物存在氢键,表现为羰基氧原子的孤对电子与H—X(X=O,N,C)反键轨道的相互作用.氢键的形成使C=O和H—X的伸缩振动频率红移.在标准压力和298.15 K下,氢键复合物的形成是一个放热的非自发过程.     

C6H5COOH⋯X分子间氢键的理论研究

在B3LYP/6-311++G(3df,2p)理论水平,计算研究C6H5COOH...X分子间氢键的理论研究(X=H2O, HCOH, CH3COCH3, NH3, CH2NH和HCN)氢键体系。获得氢键复合物稳定结构、氢键相互作用能、振动频率、热力学性质等。计算结果表明,C6H5COO—H...X体系存在较强的O—H...O与O—H...N红移氢键。C6H5COO—H...X氢键复合物气态分子的自发形成过程温度不同,C6H5COOH...NH3和C6H5COOH...CH2NH 体系在室温下能自发进行,其余二聚体要在低温下才能自发进行。     

C6H5COOH⋯X分子间氢键的理论研究

在B3LYP/6-311++G(3df,2p)理论水平,计算研究C6H5COOH...X分子间氢键的理论研究(X=H2O, HCOH, CH3COCH3, NH3, CH2NH和HCN)氢键体系。获得氢键复合物稳定结构、氢键相互作用能、振动频率、热力学性质等。计算结果表明,C6H5COO—H...X体系存在较强的O—H...O与O—H...N红移氢键。C6H5COO—H...X氢键复合物气态分子的自发形成过程温度不同,C6H5COOH...NH3和C6H5COOH...CH2NH 体系在室温下能自发进行,其余二聚体要在低温下才能自发进行。     

多巴胺DA分子的构象异构及其一水复合物的结构与性质研究

采用密度泛函B3LYP/6-31+G·方法对多巴胺DA的构象异构及其稳定性进行了研究. 结果表明,势能面上存在6种稳定构象和8种构象转换过渡态, 构象之间主要通过C1-O7 [二面角T1: H15O7C1C6], C2-O8 [二面角T2: H16O8C2C3]和C9-C10 [二面角T3: N11C10C9C5]单键旋转而相互转化. 频率及NBO分析表明, 分子内存在红移O...H-O及蓝移N...H-C两类氢键, 氢键中电子转移类型均为LP1(X)→σ·(H-Y)[X=O, N; Y=O, C], 二级稳定化能E(2)对稳定构象有3.6 kJ·mol-1～9.3 kJ·mol-1的稳定化贡献. 分子中的原子理论(AIM)分析表明, 构象中O...H-O及N...H-C键的电子密度ρ(r)和Laplacian量2ρ(r)分别在0.0094～0.0171和0.0307～0.0798之间. 采用极化连续模型(polarized continuum model, PCM)对体系进行了溶剂化效应计算, 结果表明, DA的构象转换主要在水相中进行. 应用静电势模型(electrostatic potential map, EPM)对构象的活性位点进行了预测, 并以此研究了多巴胺一水复合物的结构与性质.     

1,3,5-三氮杂苯－水簇氢键结构性质

在B3LYP/6-31 G**和MP2/6-31 G**水平上对1,3,5-三氮杂苯-(H2O)n(n=2,3)复合物的基态氢键结构进行几何优化和性质计算,结果表明复合物之间存在较强的氢键相互作用,所有稳定复合物结构中形成一个N…H-O氢键并终止于弱O…H-C氢键的氢键水链构型最稳定.氢键的形成是水分子中H-O键振动频率减小(红移).NBO分析表明,最稳定的1:2和1:3复合物发生分子问电荷转移总量分另q为0.02501 e和0.02777 e.     

咔唑分子拉曼激发虚态的相关研究

根据键极化率与拉曼峰强之间的关系,得到咔唑分子拉曼激发虚态随时间演化的键极化率. 将得到的键极化率的末态与用密度泛函理论得到的基态键电荷密度进行了对比,讨论并分析了拉曼激发虚态键极化率随时间弛豫的特征. 研究表明:咔唑分子在拉曼激发初态时,电子由两个骨架六元环向连通两六元环的连通键上流动,而并非向外围的C–H键上流动. 拉曼激发末态键极化率分布趋势与基态键电荷密度分布很相似,说明激发的电子又流回到分子骨架,即弛豫到基态. 通过对拉曼激发虚态键极化率弛豫过程特征时间的研究,发现连通两六元环的C–C键以及靠近连通键的C–C键的键极化率的弛豫时间较其他键的极化率弛豫时间都长,进一步说明了拉曼激发虚态电子弛豫特征. 这些结果反映了咔唑这类具有连通键的多元环分子在拉曼激发虚态所具有的特征与性质,这对拉曼激发虚态的研究有重要意义. 关键词： 拉曼峰强 键极化率 拉曼激发虚态     

手性分子2, 3-丁二醇的旋光拉曼光谱研究

本文从拉曼峰和旋光拉曼峰出发,通过键极化率和微分键极化率分析研究(2R, 3R)-2, 3-丁二醇. 通过分子C₁和C₂两种点群的优化结构,获得不依赖于这两种结构的结果 和有关这个手性系统物理图像的丰富信息.对分子拉曼键极化率分析,得出在拉曼弛豫过程中, 电荷主要从外围流向骨架结构.对分子微分键极化率的分析,显示在不对称C原子和与其相联系的H原子 两侧化学键, C-O和C-CH₃的微分键极化率的符号正好相反,意味着这个分子具有相当好的手性 不对称性质.对比对称和反对称的键极化率、微分键极化率,本文得到这样的结论: 对于(特别是键伸缩的)键极化率,(大体上是)对称的大于反对称的; 而对于微分键极化率则是反对称的大于对称的. 关键词： 旋光拉曼 键极化率 微分键极化率 2,3-丁二醇     

A Carbon-13 NMR Assignment Study of Certain 6-Substituted Dibenz [c,e] Azepine 5, 7-Dione

The natural abundance carbon-13 nuclear magnetic resonance spectra of diphenic acid and some 6-substituted dibenz [c,e] azepine, 5, 7-dione - which can be considered also as N-substituted diphenimide - were recorded using Fourier transform technique. The chemical shifts of various carbon resonance have been assigned on the basis of chemical shift theory, the signal multiplicity observed in the single frequency off-resonance decoupled (SFORD) spectra and comparison with the chemical shifts of the model compounds.     

On difference of properties between organic fluorine hydrogen bond C–H···F–C and conventional hydrogen bond

The existence of C–H···F–C hydrogen bonds in the complexes of trifluoromethane and cyclic molecule (oxirane, cyclobutanone, dioxane, and pyridine) has been experimentally proven by Caminati and co-workers. This study presents a theoretical investigation on these C–H···F–C hydrogen bonds at B97D/6-311++G^** and MP2/6-311++G^** levels, in terms of C–H vibrational frequency shifts, atoms in molecules characteristics, and the bonding feature of C–H···F–C hydrogen bonds. It is found that in three important aspects, there are significant differences in properties between C–H···F–C and conventional hydrogen bonds. The C–H···F–C hydrogen bonds show a blueshift in the C–H vibrational frequencies, instead of the X–H normal redshift in X–H···Y conventional hydrogen bonds. The natural bond orbital (NBO) analyses show that σ and p types of lone pair orbitals of the F atom to an antibonding σ^*_H–C orbital form a dual C–H···F–C hydrogen bond. Such a dual hydrogen bonding leads to the proton acceptor directionality of the C–H···F–C hydrogen bond softer. Our studies also show that the Laplacian of the electron density (▽²ρ_BCP) is not always a good criterion for hydrogen bonds. Therefore, we should not recommend the use of the Laplacian of the electron density as a criterion for C–H···F–C hydrogen bonds.     

Cooperative effects of hydrogen,halogen and beryllium bonds on model halogen-bonded FCl … YZ (YZ = BF,CO, N2) complexes in FX′ … FCl … YZ trimers (FX′ = FH,FCl, F2Be)

A computational study of model halogen-bonded FCl?…?YZ dimers and FX′?…?FCl?…?YZ (FX′ = FH, FCl, F₂Be; YZ = BF, CO, N₂) trimers was undertaken at the MP2/6-311++G (2d, 2p) level of theory. Three different trimer arrangements are possible and the cooperative effect of hydrogen-, halogen- and beryllium-bonding in each of these trimers was assessed relative to the FCl?…?YZ dimer. It was found that the beryllium bond has the largest cooperative effect, while the halogen bond has the smallest, with the hydrogen bond being intermediate between the other two interactions. Interesting trends in selected properties were identified and discussed.     

Ab initio study of the structure,cooperativity, and vibrational properties of HNC ternary complexes with two HF molecules

MP2/aug-cc-pVDZ calculations have been used to provide information on the three ternary systems comprising one HNC and two HF molecules. The binding distances, frequency shifts, and interaction energies in these systems have been analysed to study the cooperativity of hydrogen bond in these systems. The cooperativity of hydrogen bond in HNC–HF–HF trimer is larger than that in HF–HF–HNC trimer. The result indicates that the proton acceptor HNC plays a more important role in enhancing the cooperativity of hydrogen bond. Many-body interaction analyses have also been performed for these ternary systems.     

铵水间质子交换的再研究:不受扩散约束的化学交换

对铵盐水溶液中铵离子与水分子间的质子交换进行了再研究. 以核磁共振(NMR) 波谱学方法测定了不同pH值, 不同温度和含不同共存盐浓度的氯化铵水溶液中质子交换速率, 组分自扩散系数及NMR自旋晶格弛豫时间. 结果显示铵水间的质子交换并不受交换主体分子或离子自扩散的约束. 交换机理包括化学键和氢键的交换. 在溶液中, 水分子以氢键为桥 梁连接铵和其因水解而产生的碱性部分--氨. 在氢交换的过程中, 氨从水分子接受一个氢 成为铵, 同时另外一端的铵提供一个氢给水分子而变成氨, 或者一个氢从水分子转移到氨而同 时另外一个氢从铵转移到水. 在铵水质子交换的过程中没有净的电荷转移. 在低pH条件下, 由水解产生的氨的浓度降低, 亦即铵-水-氨复合物减少, 结果氢交换的可能性降低. 这解释了生物氢交换体系中的一种常见的在低pH值条件下氢交换变慢的现象.     

SiH4•••Y(Y=He, Ne, Ar, Kr)体系中的分子间弱相互作用

在MP2/aug-cc-pvtz水平上对SiH4•••Y(Y=He, Ne, Ar, Kr)复合物势能面上的4个构型进行优化, 探讨了SiH4…Y(Y=Ar, Kr)复合物体系中的蓝移氢键结构和电子性质. 含基组重叠误差(BSSE)校正的分子间相互作用能的相对大小可以判断复合物的相对稳定性顺序为： SiH4…He ˂ SiH4…Ne ˂ SiH4…Ar ≈SiH4…Kr. 且SiH4与Y（Y=He, Ne）体系之间的相互作用可归属为van der Waals力, 而SiH4与Y(Y=Ar, Kr）之间的相互作用属弱氢键. NBO及电子行为分显示, SiH4…Y（Y= Ar, Kr）氢键复合物是一种非静电性质的弱氢键作用. 另外, 对各复合物中相关键鞍点处的电子密度拓扑性质分析也表明复合物中均存在非静电性质的分子间弱相互作用.     

DFT study on the mechanism of trimolecular radical reactions: isomerisation in small clusters

ABSTRACT

Structural and thermodynamic properties of 48 trimolecular clusters containing one radicl and two protic molecules (H₂O, NH₃, H₂O₂, CH₃OH, HOCl) were studied at B3LYP/6-311++G(3df,3pd) level of theory. These radical-clusters have non-cyclic structures and are stabilised via two inter-molecular hydrogen bonding interactions. The calculated enthalpies of formation of the radical-clusters were generally in the range of ?30 to ?50 kJ/mol. The calculated activation energies (E_a) of the intra-cluster hydrogen transfers were smaller than 70 kJ/mol. Also, structures and thermodynamics of 15 cyclic molecular clusters as well as multi-hydrogen transfers in them were investigated. The results showed that the stability of the cyclic clusters and activation energies of the multi-hydrogen transfers depend on the cluster size.     

Comparison of solubility of gases and vapours in wet and dry alcohols,especially octan‐1‐ol

Equations for the solubility of gases and vapours into dry alcohols from methanol to decan‐1‐ol and into water‐saturated alcohols from butan‐1‐ol to decan‐1‐ol have been compared through the use of the Abraham solvation equation. It is shown that there are noticeable differences in solvation into the dry and wet alcohols, and that these differences become larger as the alcohols become smaller and take up more water. The two main factors that lead to the differences in solvation are the solute hydrogen‐bond basicity, B, and solute size, L. Increase in solute hydrogen‐bond basicity favours the wet alcohols and increase in solute size favours the dry alcohols. Solute hydrogen‐bond acidity plays no part, because the hydrogen‐bond basicity of water, wet alcohols and dry alcohols is almost the same. Copyright © 2008 John Wiley & Sons, Ltd.     

Effects of hydrogen bonds on solid state TATB,RDX,and DATB under high pressures

To probe the behavior of hydrogen bonds in solid energetic materials, we conduct ReaxFF and SCC-DFTB molecular dynamics simulations of crystalline TATB, RDX, and DATB. By comparing the intra- and inter-molecular hydrogen bond- ing rates, we find that the crystal structures are stabilized by inter-molecular hydrogen bond networks. Under high-pressure, the inter- and intra-molecular hydrogen bonds in solid TATB and DATB are nearly equivalent. The hydrogen bonds in solid TATB and DATB are much shorter than in solid RDX, which suggests strong hydrogen bond interactions existing in these energetic materials. Stretching of the C-H bond is observed in solid RDX, which may lead to further decomposition and even detonation.