First-principles calculations of stable local structures and electronic structures of magnesium secondary battery cathode materials,MgCo2−xMnxO4 (x = 0, 0.5), in second charged state after first discharge

Journal of Solid State Electrochemistry - The stable structures associated with the second charge of MgCo2−xMnxO4 (x = 0, 0.5), where Mg is removed from the stable first-discharge...     

Force-field parametrization based on radial and energy distribution functions

We propose a novel force-field-parametrization procedure that fits the parameters of potential functions in a manner that the pair distribution function (DF) of molecules derived from candidate parameters can reproduce the given target DF. Conventionally, approaches to minimize the difference between the candidate and target DFs employ radial DFs (RDF). RDF itself has been reported to be insufficient for uniquely identifying the parameters of a molecule. To overcome the weakness, we introduce energy DF (EDF) as a target DF, which describes the distribution of the pairwise energy of molecules. We found that the EDF responds more sensitively to a small perturbation in the pairwise potential parameters and provides better fitting accuracy compared to that of RDF. These findings provide valuable insights into a wide range of coarse graining methods, which determine parameters using information obtained from a higher-level calculation than that of the developed force field. © 2019 The Authors. Journal of Computational Chemistry published by Wiley Periodicals, Inc.     

Exhaustive search of the configurational space of heat-shock protein 90 with its inhibitor by multicanonical molecular dynamics based dynamic docking

Multicanonical molecular dynamics based dynamic docking was used to exhaustively search the configurational space of an inhibitor binding to the N-terminal domain of heat-shock protein 90 (Hsp90). The obtained structures at 300 K cover a wide structural ensemble, with the top two clusters ranked by their free energy coinciding with the native binding site. The representative structure of the most stable cluster reproduced the experimental binding configuration, but an interesting conformational change in Hsp90 could be observed. The combined effects of solvation and ligand binding shift the equilibrium from a preferred loop-in conformation in the unbound state to an α-helical one in the bound state for the flexible lid region of Hsp90. Thus, our dynamic docking method is effective at predicting the native binding site while exhaustively sampling a wide configurational space, modulating the protein structure upon binding.     

Velocity profile measurement by ultrasonic doppler method

The ultrasonic velocity profile measuring method has been developed at PSI for application in fluid mechanics and fluid flow measurement. It uses pulsed ultrasonic echography together with the detection of the instantaneous Doppler shift frequency. This method has the following advantages over the conventional techniques: (1) an efficient flow mapping process, (2) applicability to opaque liquids, and (3) a record of the spatiotemporal velocity field. After a brief introduction of its principle, the characteristics and specifications of the present system are given. Then examples in fluid engineering for oscillating pipe flow, T-branching flow of mercury, and recirculating flow in a square cavity are described that confirm the method's advantages. Several other works under way by other investigators are introduced. A potential for in-depth study of fluid dynamics is demonstrated by several examples from an investigation of modulated wavy flows in a rotating Couette system. The position-averaged power spectrum and the time-averaged energy spectral density were used to study the dynamic characteristics of the flow, and subsequently the velocity field was decomposed into its intrinsic wave structure based on two-dimensional Fourier analysis.     

Hemin-adsorbed carbon felt for sensitive and rapid flow-amperometric detection of dissolved oxygen

Hemin was physically adsorbed onto porous carbon felt (CF), a microelectrode ensemble of micro-carbon fiber (ca. 7 μm in diameter) and possessing a three-dimensional random structure. The hemin-CF exhibited a well-defined redox wave that is due to Fe(III)/Fe(II) redox process in hemin, with a formal potential of ?0.32 V (vs. Ag/AgCl) in deoxygenated buffer solution of pH 7.0. The surface coverage of the electroactive hemin molecules on the surface of the CF was calculated to be 5.0?×?10^?11 mol cm^?2, and the apparent heterogeneous electron transfer rate constant is 3.35 s^?1. The hemin-CF electrode displays excellent electrocatalytic activity for the reduction of dissolved oxygen (DO), and the magnitude of the cathodic current increases with increasing concentrations of DO in the sample solution. The electrode was used as a flow-through detector for sensitive and rapid consecutive determination of DO. Deoxygenated pH 7.0 solutions were analyzed at a flow rate of 8.0 mL min^?1 at an applied potential of ?0.2 V, and highly reproducible cathodic peak current responses to DO were observed in the 0.72 to 13.3 mg L^?1 concentration range. The maximum throughput is 170 samples h^?1. The hemin-CF-based amperometric flow-sensor was applied to determine the concentration of DO in environmental water samples.

Numerical computation of the nonlinear Schrödinger equation with higher order group velocity dispersion and frequency-dependent gain using the differential method

Optical Review - The response of light in a nonlinear dispersive medium is governed by the nonlinear Schrödinger equation (NLSE). In general, for higher order group velocity dispersion (GVD)...