单层MXene纳米片Ti2N电磁特性的过渡金属(Sc、V、Zr)掺杂效应

二维材料MXene纳米片由于具有较大的比表面积和较高的电子迁移率而受到广泛的关注。本文采用基于密度泛函理论的第一性原理计算,对单层MXene纳米片Ti₂N电磁特性的过渡金属(Sc、V、Zr)掺杂效应进行了系统研究。结果表明,所有过渡金属掺杂体系结合能均为负值,结构均稳定;其中Ti₂N-Sc体系的形成能为-2.242 eV,结构更易形成,且保持稳定;掺杂后Ti₂N-Sc、Ti₂N-Zr体系磁矩增大;此外,Ti₂N-Sc体系中保留了较高的自旋极化率,达到84.9%,可预测该体系在自旋电子学中具有潜在的应用价值。     

紫色球杆菌视紫红质光谱特性的机器学习研究

近年来，机器学习等人工智能技术被应用于蛋白质工程，其在蛋白质结构、功能预测、催化活性等研究中具有独特优势。在未知蛋白质结构的情况下，将蛋白质序列和功能特性与机器学习相结合，基于序列-活性关系（innovative sequence-activity relationship，ISAR）算法，将蛋白质氨基酸序列数字化，用快速傅里叶变换（fast four transform，FFT）进行预处理，再进行偏最小二乘回归建模，可在数据集较少情况下拟合得到最佳模型。通过机器学习对紫色球杆菌视紫红质（gloeobacter violaceus rhodopsin，GR）的突变体蛋白质氨基酸序列与光谱最大吸收波长进行建模，获得了最佳模型。用最佳索引LEVM760106建模得到的确定系数R² 为0.944，均方误差E为11.64。用小波变换进行的预处理，其R² 虽也约为0.944，但E大于11.64，不及FFT进行的预处理。方法较好地解决了蛋白质序列与功能特性之间的数学建模问题，在蛋白质工程中可为预测更优的突变体提供支持。     

给定度序列图的覆盖成本和反向覆盖成本的研究

具有n个顶点且度序列为(m,2,…,2,1,…,1)(1的重数为m)的连通图不止一个(这些图均为树),而每个树对应唯一一个段序列(l₁,l₂,…,l_m).通过对任意一树移动最长段的悬挂点到最短段悬挂点的方式得到另一树,比较前后两树的覆盖成本和反向覆盖成本,给出了具有最小覆盖成本和反向覆盖成本的极树,并且进一步给出了取得最小覆盖成本和反向覆盖成本的顶点.     

The metabolites and biotransformation pathways in vivo after oral administration of ocotillol,RT5, and PF11

Ocotillol, pseudo-ginsenoside RT5 (RT₅), and pseudo-ginsenoside F₁₁ (PF₁₁) are ocotillol-type saponins that have the same aglycone structure but with different numbers of glucose at the C-6 position. In this study, the metabolites of ocotillol, RT₅, and PF₁₁ in rat plasma, stomach, intestine, urine, and feces after oral administration were investigated by ultra-performance liquid chromatography coupled with time-of-flight mass spectrometry. The results showed that RT₅ was easily biotransformed into metabolites in vivo, whereas PF₁₁ and RT₅ were difficult to be biotransformed. Hydrogenation, dehydrogenation, dehydration, deglycosylation, deoxygenation, hydration, phosphorylation, deoxidation, glucuronidation, and reactions combining amino acid were speculated to be involved in the biotransformation of ocotillol, RT₅, and PF₁₁. Based on the structural analysis of metabolites, it was deduced that hydrogenation, dehydration, deoxidation, and reactions combining amino acid occurred on the aglycone structure, whereas deglycosylation, hydration, and phosphorylation occurred on the glycosyl chain. Further, metabolites in plasma, urine, feces, and tissues were different: First, glucuronidation products were found in urine, stomach, intestine, and feces, but not in plasma. Second, the ocotillol prototype was not identified in urine samples. Third, the RT₅ prototype was found in stomach, intestine, feces, and urine, but not in plasma.     

Hydrogen-Bond Cyclization Programming of Ultrasensitive Esters and Its Application in Gene Delivery

The ester bond as a universal linker has recently been applied in gene delivery systems owing to its efficient gene release by electrostatic repulsion after its cleavage. However, the ester bond is nonlabile and is difficult to cleave in cells. This work reports a method in which a secondary amine was introduced to the β-position of the ester bond to generate a hydrogen-bond cyclization (HBC) structure that can make the ester bond hydrolysis ultrafast. A series of molecules comprising ultrasensitive esters that can be activated by H₂O₂ were synthesized, and it was found that those able to form an HBC structure showed complete ester hydrolysis within 5 h in both water and phosphate-buffered saline solution, which was several times faster than other methods reported. Then, a series of amphiphilic poly(amidoamine) dendrimers were constructed, comprising the ultrasensitive ester groups for gene delivery; it was found that they could effectively release genes under quite a low concentration of H₂O₂ (<200 μm ) and transport them into the nucleus within 2 h in Hela cells with high safety. Their gene transfection efficiencies were higher than that of PEI_25k. The results demonstrated that the hydrogen-bond-induced ultrasensitive esters could be powerfully applied to construct gene delivery systems.     

水化硅酸钙纳米压痕分子动力学模拟方法优化

针对水化硅酸钙纳米压痕模型忽视了压头与基底之间相互作用的问题，由尺寸差异引起的金刚石压头难以计算的问题，以及Wittmann模型无法得到实际接触面积的问题，提出了新的模型与计算方法．结合分子动力学方法，采用金刚石压头-Wittmann模型基底的组合方式构建无定形态水化硅酸钙纳米压痕试验模型．在建模阶段，考虑到压头模型与基底模型粒子间尺寸差异，提出了等比例替换模型，通过公式推导并就不同尺寸模拟结果验证了等比例替换模型的可行性．在计算阶段，提出了局部前处理的弛豫方法进行模拟．确定最大荷载位置处的接触面积为546 nm2，进而求出水化硅酸钙模型硬度H为0.84 GPa、折合模量Er为30.52 GPa．并通过纳米压痕试验，验证了模拟结果的准确性，证明了模型的科学性，对今后水化硅酸钙(C-S-H)纳米层面的模拟具有重要借鉴意义．     

Pharmacophore features for machine learning in pharmaceutical virtual screening

Molecular Diversity - Methods of three-dimensional molecular alignment generally treat all pharmacophore features equally when superimposing. However, some pharmacophore features can be more...     

湿度对水泥生料近红外光谱检测的影响及补偿方法

近红外光谱检测已被应用于水泥生料成分的快速检测,但现场环境中的湿度等因素会对光谱产生干扰,从而降低检测精度。为了提高检测精度,在实验分析湿度对水泥生料近红外光谱检测影响的基础上研究了补偿方法。在水泥厂选取了24份水泥生料样本,其中18份作为校正集,6份作为验证集;水泥生料中的有效成分为SiO2,Al2O3,Fe2O3和CaCO3,各成分含量的标准值由X射线荧光光谱分析测出。首先,将校正集的18份样本每份重复装样测5次光谱,用得到的90个光谱建立模型Ⅰ;再每份样品制作5个湿度梯度样本,其获得过程为,先将样本放置在电加热平台上,用玻璃棒将样本摊平,180℃下加热30 min,再将样本放置在散热片上进行降温,待样品恢复室温后取出进行第一次光谱扫描,得到1个光谱,将测量后的样本放入搅拌器,使用装有去离子水的喷雾器对其喷雾两次,然后搅拌30 s混合均匀,测量混合后的样本得到下一个光谱,重复该过程,得到具有湿度梯度的5个光谱。所有样本均采用烘干法进行湿度测量,样本湿度变化区间在0.6%~2%以内。对每个湿度梯度的样本测量1次,用得到的这90个光谱建立模型Ⅱ。然后,将验证集的6份样本每份制作5个湿度梯度,获取方式与校正集相同,对每个湿度梯度的样本测量1次,得到30个光谱。所有光谱均采用多元散射校正预处理,拟合波段选择4000~5000 cm^-1,建模方法采用偏最小二乘法。比较同一份样本的5个湿度梯度,可以看到在5200 cm^-1处光谱差异最大,在其他位置也有肉眼可见的明显差异,因此,湿度变化对全波段光谱有明显的影响。最后,将这30个光谱输入模型Ⅰ与模型Ⅱ进行验证,并对比模型Ⅰ与模型Ⅱ的预测均方根误差RMSEP。模型Ⅱ中SiO2,Al2O3,Fe2O3和CaCO3的预测均方根误差RMSEP比模型Ⅰ分别减小了25%,31.3%,33.3%和25%。实验结果表明,水泥生料样本湿度对近红外光谱模型的预测结果具有一定的影响,采用具有湿度梯度的样本进行建模可有效降低湿度对预测结果的影响。