In Silico Analysis of P450s and Their Role in Secondary Metabolism in the Bacterial Class Gammaproteobacteria

The impact of lifestyle on shaping the genome content of an organism is a well-known phenomenon and cytochrome P450 enzymes (CYPs/P450s), heme-thiolate proteins that are ubiquitously present in organisms, are no exception. Recent studies focusing on a few bacterial species such as Streptomyces, Mycobacterium, Cyanobacteria and Firmicutes revealed that the impact of lifestyle affected the P450 repertoire in these species. However, this phenomenon needs to be understood in other bacterial species. We therefore performed genome data mining, annotation, phylogenetic analysis of P450s and their role in secondary metabolism in the bacterial class Gammaproteobacteria. Genome-wide data mining for P450s in 1261 Gammaproteobacterial species belonging to 161 genera revealed that only 169 species belonging to 41 genera have P450s. A total of 277 P450s found in 169 species grouped into 84 P450 families and 105 P450 subfamilies, where 38 new P450 families were found. Only 18% of P450s were found to be involved in secondary metabolism in Gammaproteobacterial species, as observed in Firmicutes as well. The pathogenic or commensal lifestyle of Gammaproteobacterial species influences them to such an extent that they have the lowest number of P450s compared to other bacterial species, indicating the impact of lifestyle on shaping the P450 repertoire. This study is the first report on comprehensive analysis of P450s in Gammaproteobacteria.     

Uptake,Translocation, and Bioaccumulation of Elements in Forest Nettle (Laportea alatipes)

Elements found in the edible parts of plants are considered to be the main source of nutrients for humans and animals. However, there is insufficient information on the relationship between heavy metal pollution in the growing soil of most edible plants. In this study, the distribution of elements in the edible forest nettle (Laportea alatipes) was evaluated as a function of geographical location. Forest land soils had higher concentrations of minor elements (Cu, Cr, Ni, and Zn) compared to soils from rural and suburban areas. Translocation factors for Cd and Pb showed effective translocation from the roots to the leaves; however, these heavy metals in leaves were still above South African maximum permissible levels for vegetables. Atmospheric depositions may play a significant role in higher Cd and Pb concentrations in the leaves. Bioaccumulation factors showed the plant to accumulate Cu, Mn, and Zn to meet physiological requirement levels. Geoaccumulation indices and enrichment factors showed no soil contamination or minimal enrichment by trace metals. Principal component analysis showed Co, Cr, Cu, Fe, Ni, Pb, and Zn in soil to originate from a common source which may be soil silicates and other minerals.     

Efficient regioselective protection of myo-inositol via facile protecting group migration

A cis-1,2-cyclohexanediol, 1,4,5,6-tetra-O-benzyl-myo-inositol, was selectively protected at the axial C2-hydroxyl via acid-mediated rearrangement of the corresponding 1,2-orthoacetate, or via the base-induced migration of a protecting group that had previously been easily installed with complete regioselectivity at the adjacent equatorial hydroxyl. Esters 4a-6a were synthesized in high yields (75-82%) while sulfonate 7a and silyl ether 8a were obtained in 85 and 31% yields, respectively. The migration of the esters induced by DBU results in equilibrium between regioisomers favouring the C2 protected isomer, but NaH induced migration of sulfonyl and silyl groups results in complete migration from equatorial to axial hydroxyl groups.     

Elemental Analysis of Edible Mountain Nettle (Obetia tenax) and the Influence of Soil on Its Chemical Composition

In developing countries, the dietary intake of essential elements is largely dependent on the consumption of edible fruits and leafy vegetables. The distribution of elements in the indigenous edible plant, Obetia tenax (mountain nettle), was investigated as a function of soil quality from eight sites in KwaZulu-Natal, South Africa. The results show concentrations of elements in the leaves to be in decreasing order of Ca?>?Mg?>?Fe?>?Mn?>?Zn?>?Cr?>?Cu?>?Ni?>?Pb?>?Co?>?As?>?Cd?>?Se, and in the stems and roots to be in decreasing order of Ca?>?Mg?>?Fe?>?Mn?>?Zn?>?Cu?>?Ni?>?As?>?Pb?>?Co?>?Cd?>?Cr?>?Se. The quality and pollution status of soil was evaluated by geoaccumulation indices and enrichment factors, which indicated moderate cadmium contamination at the Msinga location that was confirmed by the pollution index and ecological risk levels of single-factor pollution. An assessment of overall contamination of soil using Nemerow pollution index showed moderate pollution by cadmium, while the potential toxicity index indicated low-grade risk for all elements at all sites. Principal component and cluster analysis revealed two groups of elements with similarities, As, Cd, Co, Cr, Cu, Mn, Ni, and Fe, suggesting a lithogenic source and an anthropogenic source for Pb and Zn. Correlation analysis showed significantly positive correlations between As, Co, Cr, Cu, Fe, and Ni/Cd in the soil, confirming the elements’ common origin.