Experimental and kinetic modeling study of the oxidation of cyclopentane and methylcyclopentane at atmospheric pressure

Cyclopentane and methylcyclopentane oxidation was investigated in a jet-stirred reactor at atmospheric pressure, over temperatures ranging from 900 to 1250 K, for fuel-lean, stoichiometric, and fuel-rich mixtures at a constant residence time of 70 ms. The initial mole fraction of both fuels was kept constant at 1000 ppm. The reactants were highly diluted by a flow of nitrogen to ensure thermal homogeneity. Samples of the reacting mixture were analyzed online and off-line by Fourier transform infrared spectroscopy and gas chromatography. A detailed kinetic mechanism consisting of 590 species involved in 3469 reactions was developed, and simulation results were compared to these new experimental data and previously reported ignition delays. Reaction pathways analysis as well as sensitivity analyses were performed to get insights into the differences observed during the oxidation process of cyclopentane and methylcyclopentane.     

Introducing the Petasis Reaction for Late‐Stage Multicomponent Diversification,Labeling, and Stapling of Peptides

For the first time, the Petasis (borono‐Mannich) reaction is employed for the multicomponent labeling and stapling of peptides. The report includes the solid‐phase derivatization of peptides at the N‐terminus, Lys, and N^?‐MeLys side‐chains by an on‐resin Petasis reaction with variation of the carbonyl and boronic acid components. Peptides were simultaneously functionalized with aryl/vinyl substituents bearing fluorescent/affinity tags and oxo components such as dihydroxyacetone, glyceraldehyde, glyoxylic acid, and aldoses, thus encompassing a powerful complexity‐generating approach without changing the charge of the peptides. The multicomponent stapling was conducted in solution by linking N^?‐MeLys or Orn side‐chains, positioned at i, i+7 and i, i+4, with aryl tethers, while hydroxy carbonyl moieties were introduced as exocyclic fragments. The good efficiency and diversity oriented character of these methods show prospects for peptide drug discovery and chemical biology.     

An experimental and kinetic modeling study on the oxidation of 1,3-dioxolane

The modern catalytic or enzymatic advances allow the production of novel biofuel. Among them, 1,3-dioxolane can be produced from formaldehyde and ethylene glycol, both can be obtained from biomass. In this study, the oxidation of 1,3-dioxolane is studied at stoichiometric conditions. The ignition delay times of 1,3-dioxolane/O₂/inert mixtures were measured in a shock tube and in a rapid compression machine at pressures of 20 to 40 bar and temperatures ranging from 630 to 1300 K. The pressure profiles recorded in the rapid compression machine show a first stage of ignition enlightening the influence of the low temperature chemistry of combustion. Furthermore, mole fraction profiles of the stable intermediates produced during the oxidation of 1,3-dioxolane were measured in a jet-stirred reactor at 10 bar. Following these observations, a detailed kinetic model was developed with reaction rate coefficients and thermochemical data calculated by theoretical calculations or estimated by analogies to suitable molecules. In order to get an insight into the most important reaction pathways brute force sensitivity analysis and reaction pathway analysis were performed with the proposed model and discussed. It became clear that in the fuel-in-air case for the alkylhydroperoxide of 1,3-dioxolane the ring opening beta-scission pathway is favored against the further alkane-like second addition to molecular oxygen, which leads to a limited negative temperature coefficient.     

Chemical modification of L-glutamine to alpha-amino glutarimide on autoclaving facilitates Agrobacterium infection of host and non-host plants: A new use of a known compound

Background

Accidental autoclaving of L-glutamine was found to facilitate the Agrobacterium infection of a non host plant like tea in an earlier study. In the present communication, we elucidate the structural changes in L-glutamine due to autoclaving and also confirm the role of heat transformed L-glutamine in Agrobacterium mediated genetic transformation of host/non host plants.

Results

When autoclaved at 121°C and 15 psi for 20 or 40 min, L-glutamine was structurally modified into 5-oxo proline and 3-amino glutarimide (α-amino glutarimide), respectively. Of the two autoclaved products, only α-amino glutarimide facilitated Agrobacterium infection of a number of resistant to susceptible plants. However, the compound did not have any vir gene inducing property.

Conclusions

We report a one pot autoclave process for the synthesis of 5-oxo proline and α-amino glutarimide from L-glutamine. Xenobiotic detoxifying property of α-amino glutarimide is also proposed.     

Laminar flame speed determination at high pressure and temperature conditions for kinetic schemes assessment

Given the experimental difficulties, most of the available flame speed database is for relatively reduced thermodynamic conditions and for non-simultaneous variations of pressure and temperature. This limitation may be overpassed by using spherically expanding flames with the constant volume method. This methodology, introduced in the 30 s by Lewis and von Elbe, requires the knowledge of the pressure evolution in the combustion chamber. It has been penalized for a long time because of the underlying assumptions and problems in flame instability detection. This method has been greatly renewed recently by Egolfopoulos following a coupled experimental/numerical approach integrating the effects of radiation and dissociation while maintaining moderate computing costs. In parallel with this study, we have worked on an alternative method providing a maximum of information for each test minimizing uncertainties. The current study uses a new experimental device allowing simultaneous recording of pressure and flame radius inside the chamber during the full combustion process. The direct use of these data over the whole flame propagation allows testing kinetic schemes over large pressure and temperature domains with good accuracy. These new experimental targets allowed the identification of key reactions needing improvements.     

Introducing the Petasis Reaction for Late‐Stage Multicomponent Diversification,Labeling, and Stapling of Peptides

For the first time, the Petasis (borono‐Mannich) reaction is employed for the multicomponent labeling and stapling of peptides. The report includes the solid‐phase derivatization of peptides at the N‐terminus, Lys, and N^?‐MeLys side‐chains by an on‐resin Petasis reaction with variation of the carbonyl and boronic acid components. Peptides were simultaneously functionalized with aryl/vinyl substituents bearing fluorescent/affinity tags and oxo components such as dihydroxyacetone, glyceraldehyde, glyoxylic acid, and aldoses, thus encompassing a powerful complexity‐generating approach without changing the charge of the peptides. The multicomponent stapling was conducted in solution by linking N^?‐MeLys or Orn side‐chains, positioned at i, i+7 and i, i+4, with aryl tethers, while hydroxy carbonyl moieties were introduced as exocyclic fragments. The good efficiency and diversity oriented character of these methods show prospects for peptide drug discovery and chemical biology.     

Oxidation of pentan-2-ol – Part I: Theoretical investigation on the decomposition and isomerization reactions of pentan-2-ol radicals

Theoretical investigations on the kinetics of pentan-2-ol radical decomposition and isomerization reactions have been carried out in this work, together with the thermochemistry data calculations for important species involved in the reaction process. The B2PLYPD3/6-311++G(d,p) level of theory was used to optimize the geometries of all of the reactants, transition states, products and also the hindered rotor treatment for lower frequency modes. Single-point energies of all species are determined at the ROCCSD(T) level using the cc-PVQZ and cc-pVTZ which were extrapolated to the complete basis set limit (CBS). RRKM/Master Equation has been solved to calculate the pressure- and temperature-dependent rate coefficients for all channels in the pressure range of 0.01–100 atm over 300–2000 K. Pressure and temperature dependent branching fractions of key species produced from different pentan-2-ol radicals shows that 1- and 2-pentene are important bimolecular products. The kinetics and thermochemistry data for the title reactions has been used in the part II of this work for model development for pentan-2-ol oxidation.     

Oxidation of di-n-propyl ether: Characterization of low-temperature products

The oxidation of di-n-propyl-ether (DPE) was performed in a jet-stirred reactor at 1 and 10 atm, at residence times of 1 and 0.7 s, respectively, and initial fuel concentrations of 5000 and 1000 ppm at 1 and 10 atm, respectively. Atmospheric pressure experiments were used for characterization of cool flame products. The 10 atm experiment provided KHPs profile vs. temperature and mole fraction profiles of stable species which were obtained through sonic probe sampling, gas chromatography, Fourier transform infrared spectrometry analyses. High resolution mass spectrometry analyses (HRMS) with syringe direct injection or ultra-high-pressure liquid chromatography coupling was used to characterize hydroperoxides (C₃H₈O₂, C₆H₁₄O₃), diols (C₆H₁₄O₃), ketohydroperoxides (C₆H₁₂O₄), carboxylic acids, and highly oxygenated molecules (C₆H₁₂O₆, C₆H₁₂O₈) resulting from up to four O₂ additions on fuel's radicals. Heated electrospray and atmospheric pressure chemical ionizations (HESI and APCI) were used in positive and negative mode. Whereas the CH₂ groups neighboring the ether function are the most favorable sites for H-atom abstraction reactions, speciation indicated that other sites can react by metathesis forming a large pool of intermediates. Our kinetic reaction mechanism represents the experimental data for most of the stable species but need to be expended for simulating the formation of newly detected species.     

Experimental and modeling study of the oxidation of 1‐pentene at high temperature

Ignition delay times of 1‐pentene–oxygen–argon mixtures have been measured behind shock wave, the onset of ignition being detected by OH radical emission. Mixtures contained 1 or 2% of hydrocarbon for equivalence ratios ranging from 0.5 to 2. Reflected shock waves allowed temperatures from 1130 to 1620 K and pressures from 7.3 to 9.5 atm to be obtained. A detailed mechanism of combustion of 1‐pentene has been automatically generated using EXGAS software. This mechanism has been validated by comparing the results of the simulations to the experimental ignition delay times. The main reaction pathways have been derived from flow rate and sensitivity analyses at different temperatures. Comparisons with 1‐butene and 1‐hexene in the same conditions show that 1‐pentene has a higher reactivity which seems to be due to its decomposition to give ethyl radicals, which rapidly yields very reactive hydrogen atoms, while the decomposition of 1‐butene and 1‐hexene leads to less reactive methyl radicals. © 2005 Wiley Periodicals, Inc. Int J Chem Kinet 37: 451–463, 2005     

The bis-urea motif as a tool to functionalize self-assembled nanoribbons

Here we present a surfactant molecule (1) containing an ammonium headgroup, in which a bis-ureido group is incorporated in its hydrocarbon chain. Due to strong hydrogen bonding interactions, 1 forms well-defined highly ordered ribbon-like aggregates in water. Moreover, we demonstrate that these ribbons can be functionalized via a modular approach through molecular recognition of other bis-urea containing molecules. The dye disperse orange and biotin were coupled to matching bis-ureido groups and incorporated into the ribbon structure. The anchoring of different functionalities in a modular approach proved to be possible using the molecular recognition capabilities of the bis-ureido moiety, thereby opening possibilities to a wide range of applications.