Conformational Dynamics Underlies Different Functions of Human KDM7 Histone Demethylases

The human KDM7 subfamily histone H3 Nϵ-methyl lysine demethylases PHF8 (KDM7B) and KIAA1718 (KDM7A) have different substrate selectivities and are linked to genetic diseases and cancer. We describe experimentally based computational studies revealing that flexibility of the region linking the PHD finger and JmjC domains in PHF8 and KIAA1718 regulates interdomain interactions, the nature of correlated motions, and ultimately H3 binding and demethylation site selectivity. F279S an X-linked mental retardation mutation in PHF8 is involved in correlated motions with the iron ligands and second sphere residues. The calculations reveal key roles of a flexible protein environment in productive formation of enzyme-substrate complexes and suggest targeting the flexible KDM7 linker region is of interest from a medicinal chemistry perspective.     

Electrocatalytic Hydrogen Evolution Using A Molecular Antimony Complex under Aqueous Conditions: An Experimental and Computational Study on Main-Group Element Catalysis

Electrocatalytic hydrogen gas production is considered a potential pathway towards carbon-neutral energy sources. However, the development of this technology is hindered by the lack of efficient, cost-effective, and environmentally benign catalysts. In this study, a main-group-element-based electrocatalyst, SbSalen , is reported to catalyze the hydrogen evolution reaction (HER) in an aqueous medium. The heterogenized molecular system achieved a Faradaic efficiency of 100 % at −1.4 V vs. NHE with a maximum current density of −30.7 mA/cm². X-ray photoelectron spectroscopy of the catalyst-bound working electrode before and after electrolysis confirmed the molecular stability during catalysis. The turnover frequency was calculated as 43.4 s⁻¹ using redox-peak integration. The kinetic and mechanistic aspects of the electrocatalytic reaction were further examined by computational methods. This study provides mechanistic insights into main-group-element electrocatalysts for heterogeneous small-molecule conversion.     

Correlation of size and oxygen bonding at the interface of Si nanocrystal in Si–SiO2 nanocomposite: A Raman mapping study

Raman spectroscopy/mapping is used to investigate the variation of Si phonon wavenumbers, i.e., lower wavenumber (LW ~ 495–510 cm⁻¹) and higher wavenumber (HW ~ 515–519 cm⁻¹) phonons, observed in Si–SiO₂ multilayer nanocomposite (NCp) grown using pulsed laser deposition. Sensitivity of Raman spectroscopy as a local probe to surface/interface is effectively used to show that LW and HW phonons originate at surface (Si–SiO₂ interface) and core of Si nanocrystals, respectively. The consistent picture of this understanding is developed using Raman spectroscopy monitored laser heating/annealing and cooling experiment at the site of the desired wavenumber, chosen with the help of Raman mapping. Raman spectra calculations for Si₄₁ cluster with oxygen and hydrogen termination show strong mode at 512 cm⁻¹ for oxygen terminated cluster corresponding to the vibration of surface Si atoms. This supports our attribution of LW phonons to be originating at the Si–SiO₂ surface/interface. These results along with XPS show that nature of interface (oxygen bonding) in turn depends on the size of nanocrystals and LW phonons originate at the surface of smaller Si nanocrystals. The understanding developed can conclude the ongoing debate on large variation in Si phonon wavenumbers of Si–SiO₂ NCps in the literature. Copyright © 2015 John Wiley & Sons, Ltd.     

Spectral and electrochemical investigation of 1,8-diaminonaphthalene upon encapsulation of p-sulfonatocalix[4]arene

The ligand salt, Me₆[14]diene·2HClO₄ (L·2HClO₄) was prepared by condensation of acetone and ethylene diamine in the presence of perchloric acid. On reduction of this diene ligand salt, L·2HClO₄ with sodium borohydride, the two isomeric ligands, ‘tet-a’ and ‘tet-b’ were produced. The ligands, on reaction with ZnX₂ (X=Cl, ClO₄, NO₃ or CH₃COO) and ZnSO₄ produced the corresponding complexes. These complexes have been characterized on the basis of elemental analyses; IR, UV–Vis and ¹H-NMR spectroscopies; magnetic and conductance data. Based on these data, all of the complexes of the diene ligand L, as well as the perchlorate complexes of all of the ligands attained a square-pyramidal arrangement, whereas the complexes of ‘tet-a’ and ‘tet-b’, with X=NO₃, Cl or CH₃COO and with ZnSO₄ salt, were octahedral. Moreover, all complexes were monometallic except the nitrato complex, [(ZnL)₂(µ-NO₃)](ClO₄)₃ which is bimetallic. The structure of [(ZnL)₂(µ-NO₃)](ClO₄)₃ has been confirmed by X-ray crystallography. In this complex the zinc centres lie within a N₄O donor set, with the four nitrogen donors from L and one of the oxygen atom stemming from the bridging NO₃. The complexes show different electrolytic behavior in different solvents. The antibacterial activities of the ligands and complexes towards different phytopathogenic bacteria have been investigated.     

Spectral and electrochemical investigation of p-sulfonatocalix[4]arene-stabilized vitamin E aggregation

The host–guest interaction of α-tocopherol (vitamin E) with p-sulfonatocalix[4]arene (p-SC4) in solution state is studied using emission and cyclic voltammetric techniques. The lipid soluble α-tocopherol (α-T) forms a solid complex with p-SC4. FTIR and NMR spectral analysis of the solid complex reveals the tight packing of α-T inside the cavity of p-SC4. The structural deformation is confirmed by XRD analysis. SEM images differentiate the highly porous gel like structure of vitamin E aggregate and the solid structure of the host–guest complex prepared. NOESY spectra confirm the tight penetration of α-T within the hydrophobic cavity of p-SC4.     

Asymmetric Synthesis Using Sulfinimines (N-Sulfinyl Imines)

Abstract

Sulfinimine-derived polyfunctionalized chiral building blocks, often prepared in one pot, provide efficient access, with a minimum of chemical manipulation, to enantiopure, multifunctional amine derivatives including piperidines and pyrrolidines.     

Hydrodechlorination of Dichloromethane by a Metal-Free Triazole-Porphyrin Electrocatalyst: Demonstration of Main-Group Element Electrocatalysis**

In this work, the electrocatalytic reduction of dichloromethane (CH₂Cl₂) into hydrocarbons involving a main group element-based molecular triazole-porphyrin electrocatalyst H2PorT8 is reported. This catalyst converted CH₂Cl₂ in acetonitrile to various hydrocarbons (methane, ethane, and ethylene) with a Faradaic efficiency of 70 % and current density of −13 mA cm⁻² at a potential of −2.2 V vs. Fc/Fc⁺ using water as a proton source. The findings of this study and its mechanistic interpretations demonstrated that H2PorT8 was an efficient and stable catalyst for the hydrodechlorination of CH₂Cl₂ and that main group catalysts could be potentially used for exploring new catalytic reaction mechanisms.     

Baseline assessment of doses and risk due to natural radionuclides in edible biota of Domiasiat,Meghalaya, India

Radiation dose-risk assessment was carried out for cereal species Brassica compestris var. dichotoma, Oryza sativa var. Shalum1, Zea mays, Lactuca indica, Cumunis sativum, and Clocasia esculanta due to naturally available radionuclides ⁴⁰K, ²³⁸U and ²³²Th in Domiasiat area. The activity in biota and corresponding soil was measured by precipitation method using NaI(TI) detector. Transfer factor (TF) was for Oryza spp. (1.00E−01-⁴⁰K, 8.76E−05-²³²Th, and 9.11E−05-²³⁸U), for Brassica spp. (5.39E−01-⁴⁰K, 8.17E−04-²³²Th and 2.96E−04-²³⁸U) and for Zea spp. (3.41E−01-⁴⁰K, 5.84E−05-²³²Th, 8.87E−05-²³⁸U) etc., respectively. A detailed physio-morphological study of the biota and extensive investigation of ecosystem was carried out for assessment. The data was modeled using FASSET for dose estimation and obtained total dose was 1.58E−04  \upmu Gy h^-1 \upmu \hbox{Gy}\,h^{-1} in Oryza spp., 2.87E−04  \upmu Gy h^-1 \upmu \hbox{Gy}\,h^{-1} Brassica spp. and 6.90E−03  \upmu Gy h^-1 \upmu \hbox{Gy}\,h^{-1} in Zea spp. etc. The dose was compared with the UNSCEAR dataset for screening level dose for biota. Zea spp. was more susceptible for the chronic radiation exposure.     

An efficient one-pot synthesis of carbazates and dithiocarbazates through the corresponding alcohols using Mitsunobu��s reagent

A novel Mitsunobu-based protocol has been developed for the synthesis of carbazates and dithiocarbazates through the variety of corresponding primary, secondary and tertiary alcohols and various kinds of substituted hydrazines using Mitsunobu??s reagent and CO₂/CS₂ system, in good to excellent yields.