Generalization of Carré equation

The present work offers new equations for phase evaluation in measurements. Several phase shifting equations with an arbitrary but constant phase shift between captured intensity signs are proposed. The equations are similarly derived as the so-called Carré equation. The idea is to develop a generalization of Carré equation that is not restricted to four images. Errors and random noise in the images cannot be eliminated, but the uncertainty due to their effects can be reduced by increasing the number of observations. An experimental analysis of the mistakes of the technique was made, as well as a detailed analysis of mistakes of the measurement. The advantages of the proposed equation are its precision in the measures taken, speed of processing and the immunity to noise in signs and images.     

Group contributions to the infinite dilution partial molar volumes of alkanes, alcohols, and glycols in polar organic solvents

Densities of binary mixtures of polar organic solvents with alcohols were measured at 25‡C. The solvents studied were N,N-dimethylformamide, dimethylsulfoxide, and formamide while alcohols were butanol, pentanol, hexanol, and 1,4-butanediol. Density measurements of hydrocarbons (from pentane to dodecane and some heptane isomers) + N,N-dimethylformamide were also performed. From these data the apparent molar volumes of alcohols and hydrocarbons as functions of concentration were calculated. The standard partial molar volumes were obtained by extrapolation to infinite dilution and are discussed in terms of group contributions.     

A high throughput fluorescence polarization assay for inhibitors of the GoLoco motif/G-alpha interaction

The GoLoco motif is a short Galpha-binding polypeptide sequence. It is often found in proteins that regulate cell-surface receptor signaling, such as RGS12, as well as in proteins that regulate mitotic spindle orientation and force generation during cell division, such as GPSM2/LGN. Here, we describe a high throughput fluorescence polarization (FP) assay using fluorophore-labeled GoLoco motif peptides for identifying inhibitors of the GoLoco motif interaction with the G-protein alpha subunit Galpha (i1). The assay exhibits considerable stability over time and is tolerant to DMSO up to 5%. The Z'-factors for robustness of the GPSM2 and RGS12 GoLoco motif assays in a 96-well plate format were determined to be 0.81 and 0.84, respectively; the latter assay was run in a 384-well plate format and produced a Z'-factor of 0.80. To determine the screening factor window (Z-factor) of the RGS12 GoLoco motif screen using a small molecule library, the NCI Diversity Set was screened. The Z-factor was determined to be 0.66, suggesting that this FP assay would perform well when developed for 1,536-well format and scaled up to larger libraries. We then miniaturized to a 4 microL final volume a pair of FP assays utilizing fluorescein- (green) and rhodamine- (red) labeled RGS12 GoLoco motif peptides. In a fully-automated run, the Sigma-Aldrich LOPAC(1280) collection was screened three times with every library compound being tested over a range of concentrations following the quantitative high throughput screening (qHTS) paradigm; excellent assay performance was noted with average Z-factors of 0.84 and 0.66 for the green- and red-label assays, respectively.     

Apparent molar heat capacities of aqueous solutions of acetic,propanoic and succinic acids,sodium acetate and sodium propanoate from 300 to 525 K and a pressure of 28 MPa

The apparent molar heat capacities of dilute aqueous solutions of acetic, propanoic and succinic acid and sodium salts of the two monofunctional acids were measured at 300 Kp,2 ^o . After subtracting the heat capacity of a point mass, the remaining heat capacity was successfully decomposed into functional group contributions at all temperatures. Together with the results of our previous paper on alcohols and diols the heat capacity contributions of the CH₂, CH₃, OH, COOH, (COOH)₂, and COONa groups are now available and these allow reasonably accurate predictions of the heat capacities of all compounds composed of these groups in this temperature range.     

A miniaturized glucocorticoid receptor translocation assay using enzymatic fragment complementation evaluated with qHTS

Nuclear translocation is an important step in glucocorticoid receptor (GR) signaling and assays that measure this process allow the identification of nuclear receptor ligands independent of subsequent functional effects. To facilitate the identification of GR-translocation agonists, an enzyme fragment complementation (EFC) cell-based assay was scaled to a 1536-well plate format to evaluate 9,920 compounds using a quantitative high throughput screening (qHTS) strategy where compounds are assayed at multiple concentrations. In contrast to conventional assays of nuclear translocation the qHTS assay described here was enabled on a standard luminescence microplate reader precluding the requirement for imaging methods. The assay uses beta-galactosidase alpha complementation to indirectly detect GR-translocation in CHO-K1 cells. 1536-well assay miniaturization included the elimination of a media aspiration step, and the optimized assay displayed a Z' of 0.55. qHTS yielded EC(50) values for all 9,920 compounds and allowed us to retrospectively examine the dataset as a single concentration-based screen to estimate the number of false positives and negatives at typical activity thresholds. For example, at a 9 microM screening concentration, the assay showed an accuracy that is comparable to typical cell-based assays as judged by the occurrence of false positives that we determined to be 1.3% or 0.3%, for a 3sigma or 6sigma threshold, respectively. This corresponds to a confirmation rate of approximately 30% or approximately 50%, respectively. The assay was consistent with glucocorticoid pharmacology as scaffolds with close similarity to dexamethasone were identified as active, while, for example, steroids that act as ligands to other nuclear receptors such as the estrogen receptor were found to be inactive.     

Thermodynamic and physical properties of carbon tetrachloride + sulfolane mixtures

The solid + liquid phase diagram, drawn from thermal and dielectric measurements, is presented. It exibits a miscibility gap at 0.08 ≤ χ₂ ≤ 0.58, and two eutectics. The occurrence of a (likely 1:1) intermediate compound, which decomposes on melting into two immiscible liquids, is postulated. Mixed crystals are observed in the sulfolane richer region.Deviations of the liquid mixtures from ideality, positive in the case of viscosity and negative in the case of dielectric constants, are evidenced.     

A Macrocyclic Peptide Library with a Structurally Constrained Cyclopropane‐containing Building Block Leads to Thiol‐independent Inhibitors of Phosphoglycerate Mutase

Here we report the construction of an mRNA‐encoded library of thioether‐closed macrocyclic peptides by using an N‐chloroacetyl‐cyclopropane‐containing exotic initiator whose structure is more constrained than the ordinary N‐chloroacetyl‐α‐amino acid initiators. The use of such an initiator has led to a macrocycle library with significantly suppressed population of lariat‐shaped species compared with the conventional libraries. We previously used a conventional library and identified a small lariat thioether‐macrocycle with a tail peptide with a C‐terminal free Cys whose sidechain plays an essential role in potent inhibitory activity against a parasitic model enzyme, phosphoglycerate mutase. On the other hand, the cyclopropane‐containing macrocycle library has yielded a larger thioether‐macrocycle lacking a free Cys residue, which exhibits potent inhibitory activity to the same enzyme with a different mode of action. This result indicates that such a cyclopropane‐containing macrocycle library would allow us to access mechanistically distinct macrocycles.     

A Volumetric Study of Water–Decyltrimethylanimonium Bromide–Pentanol Ternary System from 25 to 130°C at 2 and 19 MPa

Density measurements on decyltrimethylammonium bromide (DeTAB)–water and pentanol (PentOH)–DeTAB–water systems as functions of both alcohol and surfactant m _S concentrations were carried out at 2 and 19 MPa from 25 to 130°C. From experimental data for the water–DeTAB binary system, the standard (infinite dilution) partial molar volumes, expansibilities, and compressibilities of DeTAB, and the corresponding properties in the micellar phase are calculated. The trends of the standard partial molar volumes of PentOH V _R ^o in DeTAB micellar solutions as functions of m _S reflect the transfer of PentOH from the aqueous to the micellar phase, except at 130°C and 19 MPa. On the basis of an equation previously used, the distribution constant of PentOH between the aqueous and the micellar phases and the standard partial molar volume of alcohol in the aqueous and the micellar phases are obtained from V _R ^o data. Comparisons with data for PentOH in dodecyltrimethylammonium bromide are made.     

Firefly luciferase in chemical biology: a compendium of inhibitors, mechanistic evaluation of chemotypes, and suggested use as a reporter

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Highlights? A representative small molecule library contains 12% firefly luciferase inhibitors ? Competitive, noncompetitive, uncompetitive, and MAI inhibitors were identified ? For FLuc-RGAs 65% of FLuc inhibitors with known MOIs increased the luminescence signal ? Methods to identify FLuc inhibitors that interfere with assay results are described