RNAGCN: RNA tertiary structure assessment with a graph convolutional network

RNAs play crucial and versatile roles in cellular biochemical reactions. Since experimental approaches of determining their three-dimensional (3D) structures are costly and less efficient, it is greatly advantageous to develop computational methods to predict RNA 3D structures. For these methods, designing a model or scoring function for structure quality assessment is an essential step but this step poses challenges. In this study, we designed and trained a deep learning model to tackle this problem. The model was based on a graph convolutional network (GCN) and named RNAGCN. The model provided a natural way of representing RNA structures, avoided complex algorithms to preserve atomic rotational equivalence, and was capable of extracting features automatically out of structural patterns. Testing results on two datasets convincingly demonstrated that RNAGCN performs similarly to or better than four leading scoring functions. Our approach provides an alternative way of RNA tertiary structure assessment and may facilitate RNA structure predictions. RNAGCN can be downloaded from https://gitee.com/dcw-RNAGCN/rnagcn.     

Airy应力函数在狭长矩形梁问题中的解

狭矩形梁上下表面作用有多项式形式的分布外力,二端边界满足Saint-Uenant边条件,考虑无体力情况,求其应力状态。文献[1]指出了Airy应力函数的一种求解方法,但没有给出梁上下两边在任意多项式分布外力下的解;文献[2]根据边界上应力函数及其导数的力学意义, ...     

稀土镧在腈纶纤维化学镀银中的应用及其电化学性能

采用化学镀法(镀液中加入适量的稀土镧)在硅烷偶联剂改性后的腈纶纤维表面沉积金属银,由粒径分析、X射线衍射、扫描电子显微镜、阴极极化曲线以及循环伏安曲线等方法对其进行表征,研究了硝酸镧对化学镀银沉积速度、镀层质量和电化学性能的影响。结果表明,镀银液中加入适宜的硝酸镧,银的沉积速率和腈纶纤维表面银镀层的表面质量均有不同程度的提高。电化学测试表明,镀银液中增大硝酸镧的浓度(0～0.01 g/L),阴极极化曲线极化度增大,氧化还原峰的电流上升,电沉积的速度加快。     

基于可调控多肽纳米管和石墨烯复合纳米结构的光吸收催化平台

近年来, 自组装纳米结构因为其容易制备、稳定、环保以及与各种功能基团、粒子等的多样结合能力吸引了科学家们的目光, 成为人们研究的热点课题, 在光电池、光催化、水凝胶、药物缓释等方面的实验科学领域得到了广泛的应用. 尤其是光催化方面, 自组装结构的重复性为激子的传递创造了比较良好的条件, 成为众多激子传递平台中的佼佼者. 本文报道了一种以苯丙氨酸二肽纳米管和羧基石墨烯为基础的自组装光吸收催化平台, 对其结构进行研究, 并使用该体系进行了烟酰胺腺嘌呤二核苷酸到它的还原态的催化实验. 该体系的微观结构由纳米管和石墨烯膜复合而成, 羧基石墨烯的存在能够降低纳米管直径, 实现纳米管的形态操控, 石墨烯与多肽纳米管复合纳米结构的存在实现了多通道协同激子传递, 降低了激子传递的距离, 极大增强了催化中心对于激子的接受和使用效率. 在复合了光敏剂和催化中心之后, 该体系具有较高的稳定性, 均一的分散性, 很强的光能吸收和转化能力等性质. 对于从NADP⁺往NADPH转变的催化实验表明, 该体系有较高的反应速率和催化效率, 并且比两种单一结构催化平台效果之和更好, 实现了一加一大于二的效应, 展现了复合纳米结构光吸收催化平台的巨大潜力和广阔应用前景.     

可拉伸超韧水凝胶的制备和应用

综述了可拉伸超韧水凝胶的设计原理及其在组织工程和柔性电子器件领域的应用. 通过将网络结构层次、 化学结构、 增韧机制与宏观力学性能相结合, 重点讨论了单网络水凝胶、 双网络水凝胶、 纳米复合水凝胶及其它水凝胶等可拉伸超韧水凝胶的研究进展, 并总结和展望了新思路和新方向.     

The construction of homoclinic and heteroclinic orbitals in asymmetric strongly nonlinear systems based on the Pad'e approximant

In this paper, the extended Pad'e approximant is used to construct the homoclinic and the heteroclinic trajectories in nonlinear dynamical systems that are asymmetric at origin. Meanwhile, the conservative system, the autonomous system, and the nonautonomous system equations with quadratic and cubic nonlinearities are considered. The disturbance parameter varepsilon is not limited to being small. The ranges of the values of the linear and the nonlinear term parameters, which are variables, can be determined when the boundary values are satisfied. New conditions for the potentiality and the convergence are posed to make it possible to solve the boundary-value problems formulated for the orbitals and to evaluate the initial amplitude values.     

溶胶-凝胶技术在织物化学镀活化预处理中的应用

以γ-氨丙基三乙氧基硅烷(KH-550)为先驱体,应用溶胶-凝胶技术在织物表面形成一层凝胶薄膜.由于该薄膜含有氨基和羟基等活性基团,能与钯离子起配位络合作用,阻止钯粒子的团聚,使钯以较高的活性完成织物化学镀.扫描探针显微镜(SPM)及扫描电子显微镜(SEM)观察了施镀前后织物的表面形态.与传统的前处理相比,无需SnCl2敏化,减少污染,缩短工艺流程,降低钯盐用量.     

Free-matrix-based time-dependent discontinuous Lyapunov functional for synchronization of delayed neural networks with sampled-data control

This paper is concerned with the synchronization of delayed neural networks via sampled-data control. A new technique, namely, the free-matrix-based time-dependent discontinuous Lyapunov functional approach, is adopted in constructing the Lyapunov functional, which takes advantage of the sampling characteristic of sawtooth input delay. Based on this discontinuous Lyapunov functional, some less conservative synchronization criteria are established to ensure that the slave system is synchronous with the master system. The desired sampled-data controller can be obtained through the use of the linear matrix inequality(LMI) technique. Finally, two numerical examples are provided to demonstrate the effectiveness and the improvements of the proposed methods.     

腺苷酸激酶催化循环后期Mg2+转移的分子动力学模拟

腺苷酸激酶是一个包含三个结构域(LID结构域、NMP结构域和CORE结构域)的蛋白质分子,其主要作用是催化化学反应Mg²⁺ + ATP + AMP ⇌ 2ADP + Mg²⁺,进而将细胞内ATP分子的浓度维持在合适的范围内。在腺苷酸激酶催化上述化学反应的过程中,需要有Mg²⁺的参与。最近的实验发现Mg²⁺不仅参与上述反应的化学步骤,而且对化学反应发生后底物的释放过程至关重要。已有晶体结构数据显示,在催化循环过程的化学反应步骤完成后,一个Mg²⁺可同时和分别位于LID结构域及NMP结构域的两个ADP分子配位。然而,在底物的释放与分离过程中, Mg²⁺可能只与其中一个ADP分子结合。由于Mg²⁺与ADP分子的结合情况会在很大程度上影响作为催化循环限速步骤的底物释放过程,因此人们有必要研究清楚在底物释放前Mg²⁺与催化产物ADP分子的配位情况,即Mg²⁺更倾向于与LID结构域的ADP分子结合还是与NMP结构域的ADP分子结合。本文中,我们对催化反应后底物释放前的酶-底物复合物(包含酶、两个ADP分子以及Mg²⁺)做了分子动力学模拟研究。我们基于metadynamics方法得到了Mg²⁺在两个ADP分子间转移的自由能面,发现在底物分离与释放过程中, Mg²⁺更倾向于与LID结构域的ADP分子结合。只有当LID结构域的ADP分子被质子化,同时NMP结构域的ADP分子处于去质子化状态时, Mg²⁺才会倾向于与NMP结构域的ADP分子结合。另外,我们也刻画了Mg²⁺转移过程中配体交换与脱水过程。本工作的研究结果有助于理解腺苷酸激酶催化循环后期的分子过程。