The Charge Transfer Complex between 2, 3-diamino-5-bromopyridine and Chloranilic acid: Preparation,Spectroscopic Characterization,DNA binding,and DFT/PCM analysis

A charge transfer hydrogen bonded complex was prepared and experimentally explored in an acetonitrile (ACN) medium between the proton acceptor (electron donor) 2, 3-Diamino-5-bromopyridine and the proton donor (electron acceptor) chloranilic acid. The stoichiometry of the charge transfer complex is 1:1. The Benesi-Hildebrand equation is used to calculate the molar absorptivity (ε_CT), association constant (K_CT) and other spectroscopic physical characteristics. The solid compound was synthesized and studied using several spectroscopic methods. The presence of charge and proton transfers in the resultant complex was supported by ¹H NMR, FT-IR and SEM-EDX investigations. The complex DNA binding ability was investigated using electron absorption spectroscopy, and the CT complex binding mechanism is intercalative. The intrinsic binding constant (K_b) value is 5.2 × 10⁶M?1. The good binding affinity of the CT complex makes it potentially suitable for usage as a pharmaceutical in the future. Molecular docking calculations have been performed between CT complex and DNA (ID = 1BNA) to study the CT-DNA interaction theoretically. To corroborate the experimental findings, calculations based on DFT were carried out in the gas and PCM analysis where the existence of charge and hydrogen transfers. Finally, good agreement between experimental and theoretical computations was observed confirming that the basis set used is appropriate for the system under examination.     

二甲双胍化学反应性的密度泛函理论研究及实验研究

二甲双胍(MET)是一个非常优良的降血糖药,一直是治疗II型糖尿病(T2DM)的首选药物,但其脂溶性较差,也存在引起胃肠道不适等副作用,对其结构修饰和衍生化,特别是将其研制成前药(Prodrug)具有一定的临床意义。为了探明二甲双胍化学反应的性能特点,本文基于密度泛函理论（DFT）开展了二甲双胍的化学内禀性质研究,包括各种可能互变异构体的单点能和量子化学反应性指数。此外,还对各异构体互变过程的过渡态以及它们的反应路径进行了研究。在此基础上,本文还对二甲双胍与亲电试剂的化学反应机理进行了初探,并用化学合成反应来验证,从而让我们能够从理论上弄清楚二甲双胍化学反应的特殊性质。     

铀酰与羧酸和肟基类配体相互作用的理论研究

深入了解各种功能基团与铀酰离子的络合行为有助于设计和开发高效海水提铀吸附剂. 本工作通过密度泛函理论(DFT)方法系统地研究了两种典型铀酰络合配体吡啶-2,6-二羧酸(H₂DPA)和戊二酰偕亚胺二肟(H₂A)与铀酰离子及碳酸根离子形成的配合物的结构、成键性质以及热力学稳定性. 研究结果表明, 所有配合物中, 配体与铀酰离子之间具有不同强度的共价相互作用. 由于H₂A配位时发生了质子重排, 而且配体的解离能较高, 使其更难与[UO₂(CO₃)₃]^4-发生取代反应, 因此H₂DPA配体是海水提铀中一种潜在的有效配体. 本工作的相关研究结果为海水提铀中高效吸附基团的设计和开发提供了理论线索.     

纳米孔缺陷导致单层黑磷电荷局域极大抑制非辐射电子-空穴复合的时域模拟

通常认为缺陷加速黑磷的非辐射电子-空穴复合,阻碍器件性能的持续提高。实验打破了这一认识。采用含时密度泛函理论结合非绝热分子动力学,我们发现P-P伸缩振动驱动非辐射电子-空穴复合,使纳米孔修饰的单层黑磷的激发态寿命比完美体系延长了约5.5倍。这主要归因于三个因素。一,纳米孔结构不但没有在禁带中引入深能级缺陷,而且由于价带顶下移使带隙增加了0.22 eV。二,除了带隙增加,纳米孔减小了电子和空穴波函数重叠,并抑制了原子核热运动,从而使非绝热耦合降低至完美体系的约1/2。三,退相干时间比完美体系延长了1.5倍。前两个因素战胜了第三个因素,使纳米孔结构激发态寿命延长至2.74 ns,而其在完美体系中约为480 ps。我们的研究表明可以制造合理数量和形貌的缺陷,如纳米孔,降低黑磷非辐射电子-空穴复合,提高光电器件效率。这一研究对于理解和调控黑磷和其它二维材料的激发态性质有重要意义。     

Rational Tuning of the Reactivity of Three-Membered Heterocycle Ring Openings via SN2 Reactions

The development of small-molecule covalent inhibitors and probes continuously pushes the rapidly evolving field of chemical biology forward. A key element in these molecular tool compounds is the “electrophilic trap” that allows a covalent linkage with the target enzyme. The reactivity of this entity needs to be well balanced to effectively trap the desired enzyme, while not being attacked by off-target nucleophiles. Here we investigate the intrinsic reactivity of substrates containing a class of widely used electrophilic traps, the three-membered heterocycles with a nitrogen (aziridine), phosphorus (phosphirane), oxygen (epoxide) or sulfur atom (thiirane) as heteroatom. Using quantum chemical approaches, we studied the conformational flexibility and nucleophilic ring opening of a series of model substrates, in which these electrophilic traps are mounted on a cyclohexene scaffold (C₆H₁₀Y with Y=NH, PH, O, S). It was revealed that the activation energy of the ring opening does not necessarily follow the trend that is expected from C−Y leaving-group bond strength, but steeply decreases from Y=NH, to PH, to O, to S. We illustrate that the HOMO_Nu–LUMO_Substrate interaction is an all-important factor for the observed reactivity. In addition, we show that the activation energy of aziridines and phosphiranes can be tuned far below that of the corresponding epoxides and thiiranes by the addition of proper electron-withdrawing ring substituents. Our results provide mechanistic insights to rationally tune the reactivity of this class of popular electrophilic traps and can guide the experimental design of covalent inhibitors and probes for enzymatic activity.     

Phenylene-Bridged Perylene Monoimides as Acceptors for Organic Solar Cells: A Study on the Structure–Property Relationship

A series of non-fullerene acceptors based on perylene monoimides coupled in the peri position through phenylene linkers were synthesized via Suzuki-coupling reactions. Various substitution patterns were investigated using density functional theory (DFT) calculations in combination with experimental data to elucidate the geometry and their optical and electrochemical properties. Further investigations of the bulk properties with grazing incidence wide angle X-ray scattering (GIWAXS) gave insight into the stacking behavior of the acceptor thin films. Electrochemical and morphological properties correlate with the photovoltaic performance of devices with the polymeric donor PBDB-T and a maximum efficiency of 3.17 % was reached. The study gives detailed information about structure–property relationships of perylene-linker-perylene compounds.     

Biocatalytic Intramolecular C−H aminations via Engineered Heme Proteins: Full Reaction Pathways and Axial Ligand Effects

Engineered heme protein biocatalysts provide an efficient and sustainable approach to develop amine-containing compounds through C−H amination. A quantum chemical study to reveal the complete heme catalyzed intramolecular C−H amination pathway and protein axial ligand effect was reported, using reactions of an experimentally used arylsulfonylazide with hemes containing L=none, SH⁻, MeO⁻, and MeOH to simulate no axial ligand, negatively charged Cys and Ser ligands, and a neutral ligand for comparison. Nitrene formation was found as the overall rate-determining step (RDS) and the catalyst with Ser ligand has the best reactivity, consistent with experimental reports. Both RDS and non-RDS (nitrene transfer) transition states follow the barrier trend of MeO⁻<SH⁻<MeOH<None due to the charge donation capability of the axial ligand to influence the key charge transfer process as the electronic driving forces. Results also provide new ideas for future biocatalyst design with enhanced reactivities.     

基于创新能力培养的化学专业本科实验教学新体系的构建与实践

课程体系是人才培养的载体。为了更好地培养拔尖创新人才,南京大学化学国家级实验教学示范中心依据化学学科的特点和发展趋势,以科学内容的内在联系和研究规律为主线构建了“化学实验基础?化学合成与表征+化学原理与测量?化学功能分子实验+化学生物学综合实验+基于项目的研究实验”实验课程新体系,按照一流课程建设要求(高阶性、创新性和挑战度)对实验教学内容进行了优化,并建立起与之相适应的实验教学平台。新课程体系综合考虑了化学一级学科的整体性和关联学科的交叉性,在南京大学化学化工学院“拔尖计划”和“强基计划”学生中实施,教学效果显著。     

Ru掺杂对Fe催化剂上酚类化合物加氢脱氧影响的密度泛函理论研究北大核心CSCD

采用密度泛函理论(DFT)计算研究了苯酚、邻甲酚、愈创木酚在不同结构Ru-Fe(211)表面上吸附活化性能和加氢脱氧反应路径.结果表明,Ru掺杂能促进H2分子在Fe(211)表面上解离,提高加氢脱氧反应速率.酚类在1Ru_(ads)-Fe(211)表面上吸附比在1Ru_(sub)-Fe(211)表面上更稳定,苯酚和邻甲酚脱羟基步骤能垒分别降低0.13和0.28 eV,有利于生成芳烃.愈创木酚在1Ru_(sub)-Fe(211)表面上加氢脱氧优势路径是先脱甲氧基生成苯酚,苯酚再加氢脱氧生成产物苯(速控步骤能垒1.16 eV);而在1Ru_(ads)-Fe(211)表面上愈创木酚先脱羟基再脱甲基生成苯酚的路径更具有动力学优势(速控步骤能垒1.21 eV).计算结果表明Ru掺杂方式影响Fe催化剂对酚反应分子的吸附稳定性以及加氢脱氧反应路径和性能.与1Ru掺杂Fe(211)催化剂相比,增加Ru原子数形成4Ru_(ads)-Fe(211),能够进一步提高酚类反应物的吸附强度,但导致加氢脱氧反应能垒升高.因此,在Fe催化剂上以表面吸附的形式掺杂少量贵金属Ru更利于酚类加氢脱氧生成芳烃.     

氧化铜表面臭氧分解路径及表面氧物种生成机理研究

基于密度泛函理论（DFT）计算研究了O3在完整和具有氧空位的CuO(111)表面吸附的吸附位、吸附结构、吸附能和电子转移情况,比较了O3在完整表面和具有氧空位的表面分解的路径和能垒,分析了氧空位和表面吸附氧的生成机理。结果表明,在完整CuO表面,O3分子通过化学吸附或物理吸附表面结合,吸附能最高为-1.22eV（构型bri(2)）。O3在具有氧空位的CuO表面均为化学吸附,吸附能最高为-2.95eV（构型ovbri(3)）,显著高于完整表面的吸附能。O3吸附后,Cu吸附位的电荷密度减小,O3中的O原子附近的电荷密度显著增强,电荷从CuO表面转移到O3,并形成Cu-O离子键。O3分解后形成了超氧物种,提高了表面的氧化活性。在完整表面,以构型bri(2)为起始构型的路径反应能垒最低,为0.52eV;O2*在完整表面的脱附所需要的最低能量为0.42eV,形成氧空位的O2*脱附能为2.06eV。在具有氧空位的表面,O3分解的反应能垒为0.30eV（构型ovbri(1)）和0.12eV（构型ovbri(3)）,均低于完整表面的反应能垒;分解形成的O2*的最低脱附能也低于完整表面,为0.27eV。可见,氧空位的形成提高了吸附能,降低了反应能垒,使O3分子更容易吸附在CuO表面,并加快了O3的催化分解。