Gaussian basis sets for molecular applications

The choice of basis set in quantum chemical calculations can have a huge impact on the quality of the results, especially for correlated ab initio methods. This article provides an overview of the development of Gaussian basis sets for molecular calculations, with a focus on four popular families of modern atom‐centered, energy‐optimized bases: atomic natural orbital, correlation consistent, polarization consistent, and def2. The terminology used for describing basis sets is briefly covered, along with an overview of the auxiliary basis sets used in a number of integral approximation techniques and an outlook on possible future directions of basis set design. © 2012 Wiley Periodicals, Inc.     

Performance of density functional theory in computing nonresonant vibrational (hyper)polarizabilities

A set of exchange‐correlation functionals, including BLYP, PBE0, B3LYP, BHandHLYP, CAM‐B3LYP, LC‐BLYP, and HSE, has been used to determine static and dynamic nonresonant (nuclear relaxation) vibrational (hyper)polarizabilities for a series of all‐trans polymethineimine (PMI) oligomers containing up to eight monomer units. These functionals are assessed against reference values obtained using the Møller–Plesset second‐order perturbation theory (MP2) and CCSD methods. For the smallest oligomer, CCSD(T) calculations confirm the choice of MP2 and CCSD as appropriate for assessing the density functionals. By and large, CAM‐B3LYP is the most successful, because it is best for the nuclear relaxation contribution to the static linear polarizability, intensity‐dependent refractive index second hyperpolarizability, static second hyperpolarizability, and is close to the best for the electro‐optical Pockels effect first hyperpolarizability. However, none of the functionals perform satisfactorily for all the vibrational (hyper)polarizabilities studied. In fact, in the case of electric field‐induced second harmonic generation all of them, as well as the Hartree–Fock approximation, yield the wrong sign. We have also found that the Pople 6–31+G(d) basis set is unreliable for computing nuclear relaxation (hyper)polarizabilities of PMI oligomers due to the spurious prediction of a nonplanar equilibrium geometry. © 2013 Wiley Periodicals, Inc.     

Atomic Force Microscopy,Transmission Electron Microscopy,and Photon Correlation Spectroscopy: Three Techniques for Rapid Characterization of Optimized Self-Nanoemulsiying Drug Delivery System of Glibenclamide,Carvedilol, and Lovastatin

This article looks at atomic force microscopy as an important aid to characterize the self-nanoemulsifying formulation of glibenclamide, lovastatin, and carvedilol in conjunction with other sophisticated technique, viz., transmission electron microscopy and photon correlation spectroscopy. Sizes obtained by processing the atomic force microscopy (AFM) image are comparable with those obtained from transmission electron microscope. Although in the present study, the mean particle size obtained from photon correlation spectroscopy does not correlate to the findings of atomic force microscopy and transmission electron microscopy, but the poly-disperse index values correlate well with the findings of AFM and transmission electron microscopy where uniform particle size was observed in aqueous dispersion of self-nanoemulsifying formulation of glibenclamide, lovastatin, and carvedilol.     

Study on the Inherent Factors Affecting the Modification Effect of EVA on Waxy Crude Oils and the Mechanism of Pour Point Depression

The Ar-Sai waxy crude oils were taken as the research objects, and the viscosity reduction rates and the condensation point reduction rates were regarded as the evaluation indexes, the impacts of components content of the crude oils and carbon number distribution of waxes on the modification effect of EVA-type pour point depressant (PPD) were analyzed by using gray correlation analysis method. The oil wax was acquired by applying the extraction and separation techniques initially, then the structures and the lattice parameters of wax crystals before and after adding the PPD were studied by polarized light microscopy observation and x-ray diffraction techniques, the mechanism of pour point depression was discussed at last. The results indicate that wax content and the low carbon number wax have significant influences on the modification effect of PPD, while the impact of high carbon number wax is relatively small. Co-crystallization is the main mechanism of pour point depression, nevertheless, the impacts of the asphaltenes, resins, solid particles, and light components of the crude oils on the modification effect of the PPD cannot be ignored.     

Hydrochemistry of an ancient traditional irrigation reservoir in Padaviya,Sri Lanka

Padaviya Wewa Reservoir constructed in 2nd century BC is an important traditional reservoir in Sri Lanka. The construction and the use of these traditional Sri Lankan reservoirs are different from modern large-scale hydroelectric and multi-purpose reservoirs in Sri Lanka and the rest of the world. The hydrochemistry of these unique water bodies has been rarely studied and understood. In this study, depth-wise distribution of Fe, Mn, Zn, Cd, and As and their correlation with pH, dissolved oxygen, conductivity, temperature, BOD, COD, and total phosphate were investigated to identify the mechanisms that drive the water quality in Padaviya Wewa Reservoir. There is a well distinguishable chemical gradient from the surface to the bottom of the water column suggesting that Padaviya is not a well-mixed water body even though the maximum water depth during the study period was 4.75 m. There was a strong negative correlation between Fe, Mn, Zn, and Cd and DO in both surface and bottom waters. In addition, a strong positive correlation between Fe, Mn, Zn, Cd, and As, and total phosphate was observed in bottom waters. The suggested driving force behind the depth-wise distribution of chemical species is intense biological activities in the reservoir. The weak thermal stratification is strengthened by photosynthesis at the surface waters and organic matter degradation at bottom of the reservoir. The end-result of these biological activities are oxygen rich surface waters with low concentrations of nutrients and metal ions and oxygen depleted bottom waters with higher concentrations of nutrients and metal ions.     

基于元素指纹的白术产地溯源及其与土壤的相关性研究

本研究主要采用电感耦合等离子体质谱仪(ICP-MS)等手段测定5个产地白术41种矿质元素含量和土壤41种化学成分指标, 结合聚类分析法、偏最小二乘判别分析(PLS-DA)法和Pearson相关性分析研究了不同产区白术矿质元素特征以及不同产区土壤因子的差异, 并对它们的相关性进行了探讨. 结果表明, 采用无监督的聚类分析和有监督的PLS-DA均能正确判别不同产地的白术和土壤, 其中稀土元素在浙江白术与土壤间呈正相关. 另外, Li、V、Mn、Co、Cu、Rb、Cd、Cs、Ba等微量元素是白术产地溯源的关键因素. 研究发现在白术生产实践中可以通过适量控制种植地的土壤湿度、增施特定肥料等措施调控白术矿质元素含量. 本研究将为解释道地白术的品质形成机制, 保证白术药效质量的有效性提供一定帮助.     

Magnetic Modulation in Heteroallene and Heterocumulene Based tert-butyl Nitroxide Diradicals: Spin Delocalization and Conformation Play Crucial Roles

We have theoretically investigated the magnetic properties of heteroallene (>C=C=X−) and heterocumulene (>C=C=C=X−) based tert-butyl nitroxide diradicals (X is P/As). Calculation of magnetic exchange coupling constant (J) shows ferromagnetic interaction in heteroallene based diradicals. Whereas, in heterocumulene based diradicals, tuning of J value from antiferro- to ferro-magnetic state is observed from Z- to E- isomer. Delocalization of spin density from radical site to the coupler (in planar arrangement) is observed in spin distribution analysis which is also advocated by molecular orbital analysis. The typical feature of tert-butyl nitroxide radical creates spin delocalization along with spin polarization within the coupler. The J values of all the diradicals strongly depend on the dihedral angle between radical center and coupler. Magneto-structural correlation shows that the change in dihedral angle tunes the magnetic property for both the Z- and E- isomers of heterocumulenes depending on the spin accumulation on two nearby magnetic centers. The extent of spin delocalization and conformation of spin centers on the molecular axis are important for the different J values observed in our designed systems.     

MRI参数对腰椎间盘突出症患者椎间盘退变程度的评估价值及与JOA、VAS评分相关性

选择腰椎间盘突出症(LDH)患者60例,分为轻度退变组、中度退变组、重度退变组。患者均行MRI检查,比较3组的MRI参数,包括髓核(NP)区、纤维环(AF)区T2值。检测比较发现,3组LDH患者NP区、AF区T2值间存在明显差异,且与腰椎功能评分(JOA)呈正相关,与腰部疼痛评分(VAS)呈负相关(P<0.05)。NP区、AF区T2值联合鉴别轻中度、中重度椎间盘退变程度的AUC大于各指标单一鉴别,具有较高评估效能。因此,MRI参数评估LDH患者椎间盘退变程度方面具有良好价值,可为临床明确患者病情提供重要参考。     

Analysis of aging-related protein interactome and cross-network module comparisons across tissues provide new insights into aging

Delaying the human aging process and thus eliminating the risk factors for age-related diseases is one of the prime objectives. While various aging-associated genes and proteins have been characterized, which provide a significant understanding of the human aging process, a significant success in regulating aging is not achieved yet. Understanding how aging proteins interact with each other and also with other proteins could provide important insights into the underlying mechanisms governing the aging process. Therefore, in this work, information of gene expression was included to the static aging-related protein interactome to understand the network-based relationships among aging-related essential (AE) proteins, aging-related non-essential (ANE) proteins, and housekeeping-proteins that could regulate or influence aging. Comprehensive analyses provided various systems-level insights into the regulatory characteristics of aging; for example, (i) network-based correlation analysis predicted functional relationships among AE proteins and ANE proteins; (ii) network variability analysis predicted aging to affect different tissues in strikingly different ways by differentially regulating various regulatory interactions; (iii) cross-network comparisons identified two aging-related modules to be significantly conserved across most of the tissues. Overall, the findings obtained during this study could be helpful for researchers to delay, prevent, or even reverse various aspects of the aging.