Multi-Dimensional Pattern Matching with Dimensional Wildcards: Data Structures and Optimal On-Line Search Algorithms

We introduce a new multidimensional pattern matching problem that is a natural generalization of string matching, a well studied problem[1]. The motivation for its algorithmic study is mainly theoretical. LetA[1:n₁,…,1:n_d] be a text matrix withN = n₁…n_dentries andB[1:m₁,…,1:m_r] be a pattern matrix withM = m₁…m_rentries, whered ≥ r ≥ 1 (the matrix entries are taken from an ordered alphabet Σ). We study the problem of checking whether somer-dimensional submatrix ofAis equal toB(i.e., adecisionquery).Acan be preprocessed andBis given on-line. We define a new data structure for preprocessingAand propose CRCW-PRAM algorithms that build it inO(log N) time withN²/n_maxprocessors, wheren_max = max(n₁,…,n_d), such that the decision query forBtakesO(M) work andO(log M) time. By using known techniques, we would get the same preprocessing bounds but anO((^d_r)M) work bound for the decision query. The latter bound is undesirable since it can depend exponentially ond; our bound, in contrast, is independent ofdand optimal. We can also answer, in optimal work, two further types of queries: (a) anenumerationquery retrieving all ther-dimensional submatrices ofAthat are equal toBand (b) anoccurrencequery retrieving only the distinct positions inAthat correspond to all of these submatrices. As a byproduct, we also derive the first efficient sequential algorithms for the new problem.     

On the problem of the elastic plate on one-sided foundation

Summary Solution existence, uniqueness and regularity are analyzed for the elastic plate on unilateral elastic foundation problem. Some results are also given for the one-sided rigid foundation case.

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Sommario Si studiano l'esistenza, l'unicità e la regolarità delle soluzioni del problema della piastra elastica su fondazione elastica unilaterale. Sono anche dati alcuni risultati per il caso di fondazione rigida unilaterale.

     

Fibrillar Networks of Glycyrrhizic Acid for Hybrid Nanomaterials with Catalytic Features

Self‐assembly of the naturally occurring sweetening agent, glycyrrhizic acid (GA) in water is studied by small‐angle X‐ray scattering and microscopic techniques. Statistical analysis on atomic force microscopy images reveals the formation of ultralong GA fibrils with uniform thickness of 2.5 nm and right‐handed twist with a pitch of 9 nm, independently of GA concentration. Transparent nematic GA hydrogels are exploited to create functional hybrid materials. Two‐fold and three‐fold hybrids are developed by introducing graphene oxide (GO) and in situ‐synthesized gold nanoparticles (Au NPs) in the hydrogel matrix for catalysis applications. In the presence of GO, the catalytic efficiency of Au NPs in the reduction of p‐nitrophenol to p‐aminophenol is enhanced by 2.5 times. Gold microplate single crystals are further synthesized in the GA hydrogel, expanding the scope of these hybrids and demonstrating their versatility in materials design.     

Sunlight curable hybrid organic–inorganic methacrylic‐based coatings: analysis of the cure mechanism and functional properties

An experimental ultraviolet (UV) polymerizable hybrid organic–inorganic protective coating, mainly intended for the surface protection of porous calcareous stone substrates, has been recently proposed and patented. The hybrid product evidenced an extraordinary hydrophobicity character, able to guarantee a high protection of the stone against water actions, as well as a high traspirability. Furthermore, it is able to equal the performance of commercial available coatings, with the important adjunctive advantage to be free solvent. The application of this product involves the use of a “dual curing” treatment, necessary to harden the coating applied on the substrate, representing this latter a technological limit. The dual curing treatment consists of 6 hr of exposure to a UV‐lamp plus 1 hr at 140°C in oven. In order to avoid this procedure, not easy to realize in situ, two different modifications of the composition of the hybrid product are proposed in this paper. The first one allows the photopolymerization of the hybrid coating only by sunlight exposure. The second one, even though requiring a UV exposure to photo‐polymerize the coating, does not need the subsequent thermal treatment at 140°C. Several experimental characterizations were performed on the newly developed hybrid products, in order to select an optimal composition for the formulations. The selected innovative products were, finally, applied on a calcareous stone substrate, typical of Apulia Region (Pietra Leccese, PL). Both coatings exhibit excellent water‐repellent action and a slight variation of the natural stone color. Copyright © 2014 John Wiley & Sons, Ltd.     

Phase Behavior of a Designed Cyclopropyl Analogue of Monoolein: Implications for Low‐Temperature Membrane Protein Crystallization

Lipidic cubic phases (LCPs) are used in areas ranging from membrane biology to biodevices. Because some membrane proteins are notoriously unstable at room temperature, and available LCPs undergo transformation to lamellar phases at low temperatures, development of stable low‐temperature LCPs for biophysical studies of membrane proteins is called for. Monodihydrosterculin (MDS) is a designer lipid based on monoolein (MO) with a configurationally restricted cyclopropyl ring replacing the olefin. Small‐angle X‐ray scattering (SAXS) analyses revealed a phase diagram for MDS lacking the high‐temperature, highly curved reverse hexagonal phase typical for MO, and extending the cubic phase boundary to lower temperature, thereby establishing the relationship between lipid molecular structure and mesophase behavior. The use of MDS as a new material for LCP‐based membrane protein crystallization at low temperature was demonstrated by crystallizing bacteriorhodopsin at 20 °C as well as 4 °C.     

Accuracy assessment of the linear Poisson–Boltzmann equation and reparametrization of the OBC generalized Born model for nucleic acids and nucleic acid–protein complexes

The generalized Born model in the Onufriev, Bashford, and Case (Onufriev et al., Proteins: Struct Funct Genet 2004, 55, 383) implementation has emerged as one of the best compromises between accuracy and speed of computation. For simulations of nucleic acids, however, a number of issues should be addressed: (1) the generalized Born model is based on a linear model and the linearization of the reference Poisson–Boltmann equation may be questioned for highly charged systems as nucleic acids; (2) although much attention has been given to potentials, solvation forces could be much less sensitive to linearization than the potentials; and (3) the accuracy of the Onufriev–Bashford–Case (OBC) model for nucleic acids depends on fine tuning of parameters. Here, we show that the linearization of the Poisson Boltzmann equation has mild effects on computed forces, and that with optimal choice of the OBC model parameters, solvation forces, essential for molecular dynamics simulations, agree well with those computed using the reference Poisson–Boltzmann model. © 2015 Wiley Periodicals, Inc.     

An exact algorithm to extend lifetime through roles allocation in sensor networks with connectivity constraints

We face the problem of scheduling optimally the activities in a wireless sensor network in order to ensure that, in each instant of time, the activated sensors can monitor all points of interest (targets) and route the collected information to a processing facility. Each sensor is allocated to a role, depending on whether it is actually used to monitor the targets, to forward information or kept idle, leading to different battery consumption ratios. We propose a column generation algorithm that embeds a highly efficient genetic metaheuristic for the subproblem. Moreover, to optimally solve the subproblem, we introduce a new formulation with fewer integer variables than a previous one proposed in the literature. Finally, we propose a stopping criterion to interrupt the optimal resolution of the subproblem as soon as a favorable solution is found. The results of our computational tests show that our algorithm consistently outperforms previous approaches in the literature, and also improves the best results known to date on some benchmark instances.     

Conjugate Direction Methods and Polarity for Quadratic Hypersurfaces

We use some results from polarity theory to recast several geometric properties of Conjugate Gradient-based methods, for the solution of nonsingular symmetric linear systems. This approach allows us to pursue three main theoretical objectives. First, we can provide a novel geometric perspective on the generation of conjugate directions, in the context of positive definite systems. Second, we can extend the above geometric perspective to treat the generation of conjugate directions for handling indefinite linear systems. Third, by exploiting the geometric insight suggested by polarity theory, we can easily study the possible degeneracy (pivot breakdown) of Conjugate Gradient-based methods on indefinite linear systems. In particular, we prove that the degeneracy of the standard Conjugate Gradient on nonsingular indefinite linear systems can occur only once in the execution of the Conjugate Gradient.     

Kinetics of a Model Weakly Ionized Plasma in the Presence of Multiple Equilibria

We study, globally in time, the velocity distribution f(v,t) of a spatially homogeneous system that models a system of electrons in a weakly ionized plasma, subjected to a constant external electric field E. The density f satisfies a Boltzmann-type kinetic equation containing a fully nonlinear electron‐electron collision term as well as linear terms representing collisions with reservoir particles having a specified Maxwellian distribution. We show that when the constant in front of the nonlinear collision kernel, thought of as a scaling parameter, is sufficiently strong, then the L ¹ distance between f and a certain time-dependent Maxwellian stays small uniformly in t. Moreover, the mean and variance of this time‐dependent Maxwellian satisfy a coupled set of nonlinear ordinary differential equations that constitute the “hydrodynamical” equations for this kinetic system. This remains true even when these ordinary differential equations have non‐unique equilibria, thus proving the existence of multiple stable stationary solutions for the full kinetic model. Our approach relies on scale‐independent estimates for the kinetic equation, and entropy production estimates. The novel aspects of this approach may be useful in other problems concerning the relation between the kinetic and hydrodynamic scales globally in time. (Accepted September 3, 1996)