A practical synthesis of archaeosine and its base

A practical synthetic route to 7-formamidino-7-deazaguanosine (archaeosine), a hypermodified nucleoside observed in archaeal tRNA, has been developed, which involves the addition of hydroxylamine to the cyano group of 7-cyano-7-deazaguanosine (preQ₀-nucleoside) and a subsequent Pd-catalyzed hydrogenation. PreQ₀-nucleoside was obtained from an optimized β-selective glycosylation developed by Hocek et al. The corresponding archaeosine base was subsequently synthesized in high yield from its precursor 7-cyano-7-deazaguanine (preQ₀).     

Quarkonia at Finite T: An Approach Based On QCD Sum Rules and the Maximum Entropy Method

Quarkonium spectral functions at finite temperature are studied, making use of a recently developed method of analyzing QCD sum rules by the maximum entropy method. This approach enables us to directly obtain the spectral function from the sum rules, without having to introduce any specific assumption about its functional form. QCD sum rules for heavy quarkonia incorporate finite temperature effects in form of changing values of the various gluonic condensates that appear in the operator product expansion. These changes depend on the energy density and pressure at finite temperature, which we extract from quenched lattice QCD calculations. As a result, it is found that the charmonium ground states of both S-wave and P-wave channels dissolve into the continuum already at temperatures around or slightly above the critical temperature T _c , while the bottomonium states are less influenced by temperature effects, surviving up to about 2.5 T _c or higher for S-wave and about 2.0 T _c for P-wave states.     

Spin-Spin Relaxation Process of 23Na-NMR in Na-Loaded NaY

Abstract

Spin-spin relaxation of ²³Na-NMR is observed by the spin echo method at room temperature for Y-type zeolite loaded with Na metal without hydration. For saturated and no levels of loading, the echo decay is well fitted by single exponential function. T ₂ decreases to be 0.25 times smaller by loading. This decrease of T ₂ is explained semiquantitatively with assuming nuclear dipole-dipole interaction between neighboring Na.     

Decomposition of Insoluble and Hard-to-Degrade Animal Proteins by Enzyme E77 and Its Potential Applications

Insoluble and hard-to-degrade animal proteins are group of troublesome proteins, such as collagen, elastin, keratin, and prion proteins that are largely generated by the meat industry and ultimately converted to industrial wastes. We analyzed the ability of the abnormal prion protein-degrading enzyme E77 to degrade insoluble and hard-to-degrade animal proteins including keratin, collagen, and elastin. The results indicate that E77 has a much higher keratinolytic activity than proteinase K and subtilisin. Maximal E77 keratinolytic activity was observed at pH 12.0 and 65 °C. E77 was also adsorbed by keratin in a pH-independent manner. E77 showed lower collagenolytic and elastinolytic specificities than proteinase K and subtilisin. Moreover, E77 treatment did not damage collagens in ovine small intestines but did almost completely remove the muscles. We consider that E77 has the potential ability for application in the processing of animal feedstuffs and sausages.     

Universal fluorescent labeling of amplification products using locked nucleic acids

Amplification/hybridization‐based genetic analyses using primers containing locked nucleic acids (LNAs) present many benefits. Here, we developed a novel design for universal fluorescent PCR using LNAs. Universal fluorescent PCR generates intermediate nonlabeled fragments and final fluorescent fragments in a two‐step amplification process that uses locus‐specific primers with universal tails and universal fluorescent primers. In this study, a few standard nucleotides were replaced with LNAs only in the fluorescent universal primers. The sequence of the fluorescent universal primer significantly affected the amplification efficiency. For primers with three LNAs, the fluorescent primers with stable M13(‐47) sequences provided the most efficient signal (approximately tenfold higher than the primers with M13(‐21) sequences at lower Tm values). Moreover, AT‐rich LNA substitutions in the fluorescent primers produced much lower amplification efficiencies than GC‐rich substitutions. GC‐rich LNAs produced greater differences in Tm values among primers, and resulted in the preferential production of fluorescently labeled amplicons. The specificity and sensitivity of LNA‐containing fluorescent primers were assessed by genotyping eight STRs in Japanese individuals, and full STR profiles could be generated using as little as 0.25 ng of genomic DNA. The method permitted clear discrimination of alleles and represents sensitive STR genotyping at a reduced cost.     

Snapshot Mueller matrix spectropolarimeter

We present a new snapshot technique for performing spectrally resolved Mueller matrix polarimetry. The basic approach is an extension of the channeled spectropolarimetry technique, employing frequency-domain interferometry to encode polarization information into modulation of the spectrum.     

Poly‐ε‐Lysine Modified Nanocarbon Film Electrodes for LPS Detection

We developed an electrochemical system for detecting lipopolysaccharide (LPS) that uses an ultraflat nanocarbon film electrode modified with poly‐ε‐lysine with a high affinity to LPS. LPS was captured on the modified electrode, and then ferrocene labeled polymyxin B (FcPMB) was captured on the LPS adsorbed electrode via the LPS‐PMB affinity interaction. The adsorbed FcPMB provided an amplified response with Fe²⁺ ions, and the current response was dependent on the amount of captured LPS (LOD=2.0 ng/mL). This was due to the efficient accumulation of the obtained current for LPS and the very low noise made possible by the ultraflat surface.