Syntheses of tetraoxaquaterene derivatives

Several new dimethyl and tetramethyl tetraoxaquaterenes, 3d and 3e , have been prepared in order to synthesize the oxygen analogues of porphyrin. The reaction between furan and a ketone using an acidic catalyst gave the cyclic tetramer, tetraquaterene, and oligomers. On the other hand, in the case of furan and an aldehyde, only linear oligomers were isolated. The condensation of furan-containing dimers with carbonyl compounds, both ketone and aldehyde, except formaldehyde, gave the tetraoxaquaterene. In the case of formaldehyde, the yield of cyclic tetramer was negligible.     

An electron microscopic study of the archaeal feast/famine regulatory protein 5. Fourier filtration of images

Microcrystals of the feast/famine regulatory protein (FFRP) pot0434017 (FL11) were prepared by sonicating larger crystals. Using the microcrystals a cryo-electron micrograph was obtained, which showed a hexagonal packing of cylinder-like assemblies of FL11. This micrograph was processed by selecting, in the Fourier space, spots reflecting the crystal lattice, thereby removing the noise. The microcrystal was not totally free from distortion, and cylinders in local clusters adopted slightly different orientations. Thus, 25 hexagonal units closest to the ideal, each containing a cylinder at the center surrounded by six others, were manually selected. The averaged image was further processed to yield a perfect six-fold symmetry. These processed images, and some of the original images too, show bridges connecting cylinders, each corresponding to two pairs of N-domains, protruding from the two cylinders and contacting between them in the X-ray structure.     

Determination of the Heat of Adsorption and Desorption of a Volatile Organic Compound Under Dynamic Conditions Using Fourier‐Transform Infrared Spectroscopy

Quantitative Fourier‐transform infrared spectroscopic analysis was used for the determination of adsorption capacity of a model volatile organic compound (VOC) under dynamic conditions. The analytical method used also offers the possibility of distinguishing between reversible and irreversible adsorption as well as further detection of adsorbed VOC transformation. The obtained adsorbed amounts have been used for the determination of the heat of adsorption and the activation energy of desorption using, respectively, isosteric and temperature programmed desorption methods. The approach has been applied to explore the potential use of local clay as an adsorbent material for VOC pollutants.     

Phase behavior of binary bilayer membrane of dipalmitoylphosphatidylcholine and stigmasterol

Journal of Thermal Analysis and Calorimetry - We investigated the phase behavior of a binary bilayer membrane of dipalmitoylphosphatidylcholine (DPPC) and stigmasterol (Stig) as a function of the...     

Key role of the Lewis base position in asymmetric bifunctional catalysis: design and evaluation of a new ligand for chiral polymetallic catalysts

New chiral ligands for asymmetric polymetallic catalysts were designed on the basis of the assumption that the higher-order assembly structure is stabilized by modifying the modular unit. The designed ligands 6 and 7 contained a scaffolding cyclohexane ring with a Lewis base phosphine oxide directly attached to the scaffold. A module in the polymetallic complex contains two metals per ligand, and a stable 6-, 5-, 5-membered fused chelation ring system should be generated. Synthesis of these ligands is simple and high yielding, using a catalytic dynamic kinetic resolution promoted by the Trost catalyst as a key step. Ligand function was assessed in a catalytic asymmetric ring-opening reaction of meso-aziridines with TMSCN, a useful reaction for the synthesis of optically active beta-amino acids. The Gd complex generated from Gd(OiPr)3 and the ligand was a highly active and enantioselective catalyst in this reaction. Enantioselectivity was reversed compared to the previously reported d-glucose-derived catalyst containing the same chirality of the individual module. ESI-MS analysis and X-ray crystallographic studies indicate that the assembly state of the modules in the polymetallic catalysts differs depending on the chiral ligand. The difference in the higher-order structure stems from a subtle change (one carbon) in the position of the Lewis base relative to the Gd metal. The change in the higher-order structure of the polymetallic complex led to a dramatic reversal of the enantioselectivity and increased catalyst activity.     

Influence of second sphere hydrogen bonding interaction on a manganese(II)-aquo complex

We have developed a pentadentate N(4)O ligand scaffold with a benzimidazole group placed in a rigid fashion to develop hydrogen bonding interaction with the ligand in the sixth position. The mononuclear Mn(II) complex with a water molecule was isolated and characterized. We discuss the role of the outer sphere ligand in stabilising a Mn(II)-aquo complex.     

New Poly(propylene glycol)‐ and Poly(ethylene glycol)‐Based Polymer Gelators with L‐Lysine

Summary: New polymer gelators consisting of poly(propylene glycol) or poly(ethylene glycol) and L ‐lysine‐based low‐molecular‐weight gelators have been developed. These polymer gelators were synthesized according to a simple procedure with high reaction yield, and formed organogels in many organic solvents. The organogelation mechanism was proposed from the transmission electron microscopy and FTIR spectroscopy studies.

Structures of the polymer gelators synthesized here.     

An electron microscopic study of the archaeal feast/famine regulatory protein: 2. Crystal formation by a full length FFRP,pot0434017 (FL11)

In the crystal the archaeal feast/famine regulatory protein pot0434017 (FL11) forms helical cylinders, each extending along the c axis and densely packed with a hexagonal symmetry in the a/b plane. By applying cryo-electron microscopy to protein solutions yielding crystals, with selectively focussing zero-loss electrons accelerated at 200 KV, two types of regular objects were observed, hexagonal (i.e. projections of crystals to their a/b planes) or rectangular (i.e. projections onto planes perpendicular to a/b). The two types of images are different in the ranges of sizes, suggesting that the crystallization might initiate by forming a hexagonal sheet on the a/b plane, subsequently extending along the c axis. Some other images obtained were intermediate between regular and amorphous, suggesting that some crystals were growing inside amorphous precipitates by rearranging the protein molecules, and that some larger crystals were growing by absorbing smaller amorphous precipitates. Tubes running parallel to each other were also observed in pieces of thin films. These tubes have hollows in their centers, and their lateral arrangement with a periodicity of ~150 Å and the presence of a helical component ~50 Å suggest that they are projections of the helical cylinders, forming mono-layers on the a/c or b/c planes.     

An electron microscopic study of the archaeal feast/famine regulatory protein: 6. The cylindrical assembly form

Using a microcrystal of the feast/famine regulatory protein (FFRP) pot0434017 (FL11), a cryo-electron micrograph was taken, showing a projection of cylinder-like assemblies packed parallel to each other. This electron micrograph was processed in the Fourier space by selecting spots reflecting the packing and, in addition, those reflecting stacking of units inside the cylinders. Twenty seven subimages were selected, each containing three cylinders of 24 discs each, running nearly parallel to each other. By averaging these images and in combination with another average showing a different view [Ishijima, S. A., Clowney, L., and Suzuki, M. (2004) Proc. Jpn. Acad., Ser. B 80, 183–188], some details of the 3D structure of the cylindrical assembly form are discussed.