Ab initio calculations on large molecules using molecular fragments. Characterization of the zwitterion of glycine

The ab initio molecular fragment approach is applied to a characterization study of the ground state of the zwitterion of glycine. Included among the properties studied are the — conformational energy surface, the electronic structure, and the magnitude and direction of the dipole moment. The results of the present study are compared to the results of other theoretical and experimental studies.This work was supported in part by the National Science Foundation, the University of Kansas, and the Upjohn Company, Kalamazoo, Michigan 49001.NSF Trainee (1969-1972).Alfred P. Sloan Research Fellow (1971–1973).     

STEREOELECTRONIC PROPERTIES OF PHOTOSYNTHETIC AND RELATED SYSTEMS — V. AB INITIO CONFIGURATION INTERACTION CALCULATIONS ON THE GROUND AND LOWER EXCITED SINGLET AND TRIPLET STATES OF ETHYL CHLOROPHYLLIDE a AND ETHYL PHEOPHORBIDE a

Abstract— Ab initio configuration interaction wavefunctions and energies are reported for the ground state and many low-lying excited singlet and triplet states of ethyl pheophorbide a (Et-Pheo a) and ethyl chlorophyllide a (Et-Chl a), and are employed in an analysis of the electronic absorption spectra of these systems. In both molecules the visible spectrum is found to consist of transitions to the two lowest-lying ¹(π, π*) states, S₁ and S₂. The configurational compositions of S₁ and S₂ in both molecules are similar, and are described qualitatively in terms of a four-orbital model. The S₁← S₀ transition in each case is predicted to be intense, and is largely in-plane y-polarized, while the S₂← S₀ transition is predicted to be extremely weak and in-plane polarized. The orientation of the S₂← S₀ transition dipole is not conclusively established in the present calculations. The Soret band in both molecules is composed of transitions to no less than ten states (S_3-S₁₂ in Et-Chl a and S₃-S₇S₉-S₁₂. and S₁₄ in Et-Pheo a), which exhibit primarily (π, π*) character. The configurational compositions of these states are generally a complex mixture of excitations from both occupied macrocyclic π molecular orbitals and occupied orbitals with electron density in the cyclopen-tanone ring and the carbomethoxy chain. No clear correspondences are evident between respective Soret states of the two systems. Transitions to these states are generally intense and display a variety of in-plane polarizations. Two additional Soret states of Et-Pheo a, S₈ and S₁₃, exhibit primarily (n. π*) character. S₈ is characterized by excitations from u and non-bonding regions of the carbomethoxy chain, while S₁₃ is described by n →π* excitations involving the nitrogen atom of ring II. No corresponding (n, π*) states were found for Et-Chl a. In both molecules the lowest two triplet states, T₁ and T₂, are found to lie lower in energy than S₁. while T, and S₁ are approximately degenerate. The configurational compositions of T₁-T₄ of both molecules are nearly identical, and may be described by a four-orbital model. However, the compositions of T₁-T₄ differ sharply from those of S₁ and S₂. A number of higher-lying ³(π, π*) states of both molecules (T₅-T₁₃ in Et-Chi a and T₈-T₉, T₁₁-T₁₃ in Et-Pheo a) are found to have energies similar to the singlet Soret states, relative to S₀. They are characterized by a complex mixture of configurations which do not include significant contributions involving the four-orbital model. In addition, two ³(n, π*) states of Et-Pheo a, T₁₀ and T₁₄, are found, which are somewhat analogous to S₈ and S₁₃. Additional data presented include the charge distributions and molecular dipole moments of the S₀. S₁, and T₁ states of both molecules, as well as energies and oscillator strengths of computed S_n←S₁ and T_n←₁ transitions.     

PHOTOINACTIVATION OF CATALASE

Abstract— Inactivation of catalase with visible light (>400nm) has been studied in purified bovine liver catalase and in peroxisomal catalase in the mitochondrial fraction of rat liver. Light corresponding to that of maximal absorbance of the heme site (405 nm) was most effective in inactivation. Although photoinactivation is O₂ dependent, scavengers of OH radical, ¹O₂ and O⁻₂ did not protect against loss of activity in either system. Superoxide dismutase partially protected purified catalase added into the mitochondrial fraction system. However, complete protection of catalase was afforded by low concentrations of substrates such as formic acid or methanol which rapidly convert Compound I to Ferricatalase.     

The C-H activation of methane by laser-ablated zirconium atoms: CH2=ZrH2, the simplest carbene hydride complex, agostic bonding, and (CH3)2ZrH2

Reaction of laser-ablated Zr with CH(4) ((13)CH(4), CD(4), and CH(2)D(2)) in excess neon during condensation at 5 K forms CH(2)=ZrH(2), the simplest alkylidene hydride complex, which is identified by infrared absorptions at 1581.0, 1546.2, 757.0, and 634.5 cm(-)(1). Density functional theory electronic structure calculations using a large basis set with polarization functions predict a C(1) symmetry structure with agostic C-H- - -Zr bonding and distance of 2.300 A. Identification of the agostic CH(2)=ZrH(2) methylidene complex is confirmed by an excellent match of calculated and observed isotopic frequencies particularly for the four unique CHD=ZrHD isotopic modifications. The analogous reactions in excess argon give two persistent photoreversible matrix configurations for CH(2)=ZrH(2). Finally, methane activation by CH(2)=ZrH(2) gives the new (CH(3))(2)ZrH(2) molecule.     

Fluorescence-dip infrared spectroscopy and predissociation dynamics of OH A 2Sigma+ (v = 4) radicals

Fluorescence-dip infrared spectroscopy, an UV-IR double-resonance technique, is employed to characterize the line positions, linewidths, and corresponding lifetimes of highly predissociative rovibrational levels of the excited A (2)Sigma(+) electronic state of the OH radical. Various lines of the 4 <--2 overtone transition in the excited A (2)Sigma(+) state are observed, from which the rotational, centrifugal distortion, and spin-rotation constants for the A (2)Sigma(+) (v = 4) state are determined, along with the vibrational frequency for the overtone transition. Homogeneous linewidths of 0.23-0.31 cm(-1) full width at half maximum are extracted from the line profiles, demonstrating that the N = 0 to 7 rotational levels of the OH A (2)Sigma(+) (v = 4) state undergo rapid predissociation with lifetimes of < or =23 ps. The experimental linewidths are in near quantitative agreement with first-principles theoretical predictions.     

The mass spectra of aluminum isopropoxide

The mass spectra of aluminum isopropoxide show that polymers, [Al(OC₃H₇)₃]_x where x = 1 to 7, can be present in the vapor and are, therefore, probably present in the bulk sample. The polymeric composition of the vapor depends on the previous history of the sample. Exact mass measurements on many of the ions along with data on a number of metastable peaks support the proposed fragmentation mechanisms. Loss of 102 mass units between intense peaks in the mass range above 500 a.m.u. leads to the suggestion that the higher polymers may be used as high mass marking substances.     

Static dipole polarizability of electronically excited molecules: H2(B1Σu+)

The dipole polarizability of H₂(B¹Σ_u⁺) is computed using extended Gaussian basis sets and Hartree-Fock, multiconfiguration Hartree-Fock, and configuration interaction wavefunctions. Electron correlation contributions are found to be significant (≈ 25%) with the largest contribution arising from angular correlation. With a full CI wavefunction, the components of the dipole polarizability were computed to be (in au): α_⊥ = 50 and α_| = 257.     

An order-disorder transition in Sr2IrD5: Evidence for square pyramidal IrD5 units from powder neutron diffraction data

Neutron diffraction data have been collected on a powdered sample of Sr₂IrD₅ over a range of temperatures. The compound, which is cubic at room temperature, has been found to exhibit a gradual transformation to a tetragonal phase in the temperature range 200-140 K. As a result of the transition, deuterium atoms which randomly occupy sixfold positions in the cubic phase, become tetragonally ordered. A small fraction of the cubic phase remained untransformed at 4.2 K. Both the cubic and tetragonal structures are consistent with square pyramidal IrD₅ units with average Ir---D distances of 1.714 and 1.718 Å, respectively. Agreement factors, R₁, for the two structural analyses are 3.44 and 4.94%.