Critical review on the development of analytical techniques for the elemental analysis of airborne particulate matter

Among all environmental pollutants, particulate matter (PM) poses the major threat to our health. These tiny airborne particles vary in shape and composition, which is reflected in their hazardous potential. The particles are small enough to penetrate deep into the lungs and even enter the bloodstream, causing severe diseases. Therefore, their regular monitoring is required. Toxic metals and other elements are often measured by regulatory agencies as well as in research laboratories, either to compare ambient concentrations with prescribed limit values or to study provenance of air pollution sources in order to target PM pollution mitigation strategies. The most established method for the determination of regulated Pb, Cd, As, Ni and other elements in PM is microwave digestion inductively coupled plasma mass spectrometry (MW/ICPMS), whereas X-ray fluorescence (XRF) techniques have also often been used, especially in research. In this review paper we critically assess these two and three other analytical techniques (i.e., LA-ICPMS, PIXE and INAA) for element determination in PM deposited on filter media. All aspects from sample treatment to measurement range and limitations, costs and waste management are considered. In conclusion we identify XRF and LA-ICPMS as two promising surface techniques for the analysis of a PM deposit on a filter, which could replace the laborious wet MW/ICPMS method, which is – considering its wide use, very incriminating to the environment. In short, EDXRF is the cheapest, simplest for use and already customized for PM samples, whereas LA-ICPMS is promising, but still needs some development in the direction of autosamplers and matrix-matched standards for calibration.     

Some aspects of green solvents

Chemical solvents constitute around 80% of the total volume of chemicals used in many important chemical processes, especially fine chemical manufacturing. Unfortunately, these solvents are often volatile organic compounds from petroleum resource bearing several health and environmental risks. Numerous researchers take these two aspects as a reason to search for novel green solvents to replace the conventional ones. As a consequence, there are an increasing number of publications dealing with green solvents. In this review, we discuss the definition and accuracy of the term “green solvent”. We explain our urgent request for application-oriented research in this field. Finally, we point out some promising and interesting kinds of solvents, solvent systems and solubilization concepts for a successful research towards “greener solvents”.     

Progress in Practice: Exploring the Cooperative and Collaborative Dimensions of Group Learning

We all participate in a variety of groups as part of our daily lives, from families to social and work communities. As chemists, we are part of our college departments, our professional societies, our research groups, and so on. In graduate and undergraduate school, some of us formed peer study groups in response to the demands of those other groups that we were a part of: our formal courses. We know we are not unique in this. The popular culture, at least, is filled with portrayals of medical, law, and business students who must divide responsibility for learning a daunting amount of course material and who then teach one another as a part of their learning. Graduate research groups in chemistry are generally highly structured by their research directors where community issues are involved (group meetings and assignments, shared equipment, and representatives who obtain specialized skills such as crystallography or mass spectrometry), and move towards a less authoritative structure when developing individual initiative is the goal. Individuals depend on (and learn with) one another in all kinds of educational situations. In order to emphasize this idea, Bruffee [1] advocates the use of a phrase attributed to John Dewey: living an associated life. As Bruffee describes it, formal education in America has been based on a philosophy of associated learning since at least the time of Benjamin Franklin. We all live and learn in an associated way. Differences in interactions vary according to the nature of a groups structure (and sometimes, although not as often, to an individuals degree of dissociation from the group).Individuals involved in curriculum design often introduce new, modified or applied ideas about instruction that range from classroom methods to philosophies of education. In this series, Progress in Practice, we will examine progress in chemical education that is related to practices, where many recommendations have originated from areas in higher education that exist alongside of and overlap with chemistry. Rather than an exhaustive review, we will select examples, background and vocabulary that may either invite interested newcomers to explore a different area in their teaching, or provide language and precedent for individuals who wish to contextualize ideas they have developed independently.     

Flavonoids: biological activities and therapeutic potential

Abstract

Flavonoids have aroused much interest in research, since they present a great diversity of biological activities observed in vitro, such as: antioxidant effect, modulation of the enzymatic activity and inhibition of cellular proliferation, exerting beneficial effects on the organism, as well as the use of its therapeutic potential. With wide distribution in the plant kingdom represent a class of phenolic compounds that differ in their chemical structure and particular characteristics. The objective of this review was to describe the relevant aspects of flavonoids, reporting the different known groups, the probable mechanisms by which they act, their pharmacological properties and to gain a better understanding of the reported beneficial health effects of these substances. This systematic review consisted of research using scientific databases such as Scopus, Science Direct, PubMed, SciVerse and SciELO, without time limitation. Some pharmacological properties of some flavonoids and their health benefits have been confirmed by previous studies.     

Global analysis of gene expression in cells of the immune system I. Analytical limitations in obtaining sequence information on polypeptides in two-dimensional gel spots

We have outlined various aspects and limitations of the collective analysis of protein species of a cell (lymphocyte). We have indicated research directions that, in to our opinion, deserve more attention. We have evaluated mainly the approach used in our laboratory and we recognize that a bulk of important research on the interface of proteomics and genomics remains to be dealt with. It is of great value that we can proceed in our quest by trial and error. But as much as the human genome initiative was not implemented by trial and error, but by formulating new technological approaches, we hope that our approach can be incorporated in the mainstream of proteomics. We need several integrating research directions, some of which are outlined in this communication, namely the use of ordered cDNA libraries, cell-free expression systems, high density filter hybridization, identification of two-dimensional (2-D) gel spots in terms of their amino acid composition through biosynthetic labeling and identification of restriction sites in the corresponding coding sequences. In the accompanying paper the cDNA ordered library approach will be described in some detail.     

Chemical Toolbox to Decode the Microbiota Lexicon

The human microbiota deploys a diverse range of molecules and metabolites to engage in chemical communications with the host, mediating fundamental aspects of host health. Studies of the structures and activities of bioactive molecules produced by the microbiota are imperative to address their implications in microbiota associated diseases in human. By drawing experiences from different research fields, chemists and chemical biologists, who are experts in dealing with chemical molecules, are uniquely positioned to contribute to the emerging knowledge of human microbiota. In this minireview, we discuss the current chemical tools and methods that are pertinent to the discovery of microbiota molecules and metabolites, characterizations of their protein targets, as well as evaluations of their biodistributions in hosts. These are key aspects in understanding the chemical underpinnings of the microbiota‐host interactions that would enable future development of diagnostics and therapeutics targeting the human microbiota.     

A review on analytical performance of micro- and nanoplastics analysis methods

Micro- and nanoplastics have been detected in diverse matrices. Recent studies have suggested their health impact on humans, animals, plants, and environment which depends on the size, concentration, chemical nature, and the mode of interaction of the plastic particles. Detection and quantification of these particles are often challenging due to their small size and complexity of the matrix in which they exist. The concentration and size of the particles combined with the nature of the matrix determines an analytical method to be followed. In recent years, many review articles focusing on origin, fate, and health effects of micro- and nanoplastics are already published. A systemic review focusing on analytical performance of currently available micro- and nanoplastics analysis methods would be useful for the scientific community. In this article, we reviewed papers and reports published in recent decades focusing on the sampling, concentration, detection, and chemical identification methods. We also reviewed the emerging new methods for microplastic analysis. Finally, we provide advantages and limitations of the methods and future perspectives on microplastic analysis.     

Nanoemulsions to support ex vivo cell culture of breast cancer circulating tumor cells

The culture and expansion of circulating tumor cells (CTCs) for ex vivo assays plays an important role in precision medicine. However, it still represents a big challenge in translational research. Generating knowledge about the characteristics of CTCs can help to shed light about the metastasis process. Furthermore, ex vivo culture of CTCs might allow performing functional analyses and testing different drugs, to guide clinical therapies. In this work, we present a new methodology based on the use of nanosystems to support ex vivo culture of CTCs. We have formulated oil-in-water (O/W) nanoemulsions (NEs) composed by lipids and fatty acids, and have demonstrated that they can help increasing cell viability on different breast cancer cell lines. Moreover, we have generated a CTC model from breast cancer mice xenografts, to prove the ability of the NEs to facilitate their culture and expansion. Additionally, we have postulated a mechanism of action based on the cell consumption of the NEs, which are acting as energy suppliers, driving proliferation. This work corroborates the potential of nanotechnology to provide valuable tools for precision oncology, and the ability of our NEs to improve proliferation of breast cancer CTCs for the establishment of CTCs culture protocols.     

基于"营养化学"通识课程综合互动性考评体系的建立与实施

以学生为中心,以学生能力培养为导向,设计"课堂辩论""社会调查""养生文化推广"三种考试形式,以实践形式从不同侧面考核学生综合运用所学知识的能力。学生自选考试形式,参与评分过程。对学生考试成绩的分析结果显示,各种考试形式及其评分标准合理、有效,能对学生综合素质给予全面系统的评估。     

Polyethylenimine-based polyplex nanoparticles and features of their behavior in cells and tissues

The design of efficient systems for the targeted delivery of nucleic acids into cells is a rapidly developing area of polymer chemistry, molecular biology, and medicine. Complexes between DNA or RNA polyanions and various polycations, which are usually called polyplexes, hold promise as such delivery systems. Polyethylenimines (PEIs) and their derivatives are often used in research for the preparation of such complexes with plasmid DNA, oligonucleotides, and small RNA. Polyplex nanoparticles are employed for the delivery of genetic material into cells in culture and for the development of methods for the treatment of genetic and cancer diseases. The properties of polyplexes depend on the size, dispersity, and hydrophilicity of the used PEI or its derivatives and the ratio of polymers in the complex, which are responsible for the size, surface charge, and hydrophilicity of the resulting nanoparticles. The efficiency of polyplexes is determined by their ability to interact with components of biological systems on the surface and inside the cells, as well as with the blood vascular walls and the extracellular matrix during systemic in vivo use.     

The family of GFP-like proteins: structure, function, photophysics and biosensor applications. Introduction and perspective

In this issue, we offer a symposium-in-print that is focused on several new advancements in fundamental research related to the family of GFP (green fluorescent protein)-like proteins. A few applied aspects are also included to illustrate the impact this amazing set of colored proteins has made on our understanding of cell biology at the molecular level. The six articles presented here cut across several disciplines ranging from biological function to protein structure to photophysical aspects. These highly original pieces of work include both experimental and computational approaches, and will provide the reader with significant insight into current, state-of-the-art research activities in this very dynamic and fast-paced field. In the first part of this perspective, I will give a brief overview of the history and salient features of GFPs, cite some examples that illustrate their impact on biotechnology, and provide a brief review of the structural and chemical features that lend these proteins their fascinating appearance. In the second part, I will introduce each of the peer-reviewed contributions of the participating authors.     

Chemistry and Dual Use: From Scientific Integrity to Social Responsibility

Ethical aspects of chemical activity are often exclusively located in the field of scientific integrity and good scientific practice. Yet, there is another dimension of ethics in chemistry that is not covered by research ethics: the impact of chemical scientific and technological progress on society and environment. Here, especially, the dual character of manifestations of chemical progress (new compounds, materials, and processes) is discussed. This essay aims at clarifying the roles, responsibilities, and chances of chemists to contribute to the assessment and management of dual use risks. Its main argument is that the framework for an efficient risk assessment has been established in science and technology governance, based on the sustainability concept. Without having to worry about exceeding their core competences too much – as in ‘Ethics is not my business!’ – chemists’ expertise and knowledge plays a crucial role in tackling the most urging issues of our times as part of a larger interdisciplinary endeavour.     

High-throughput 3D spheroid culture and drug testing using a 384 hanging drop array

Culture of cells as three-dimensional (3D) aggregates can enhance in vitro tests for basic biological research as well as for therapeutics development. Such 3D culture models, however, are often more complicated, cumbersome, and expensive than two-dimensional (2D) cultures. This paper describes a 384-well format hanging drop culture plate that makes spheroid formation, culture, and subsequent drug testing on the obtained 3D cellular constructs as straightforward to perform and adapt to existing high-throughput screening (HTS) instruments as conventional 2D cultures. Using this platform, we show that drugs with different modes of action produce distinct responses in the physiological 3D cell spheroids compared to conventional 2D cell monolayers. Specifically, the anticancer drug 5-fluorouracil (5-FU) has higher anti-proliferative effects on 2D cultures whereas the hypoxia activated drug commonly referred to as tirapazamine (TPZ) are more effective against 3D cultures. The multiplexed 3D hanging drop culture and testing plate provides an efficient way to obtain biological insights that are often lost in 2D platforms.     

Two Decades of Laccases: Advancing Sustainability in the Chemical Industry

Given the current state of environmental affairs and that our future on this planet as we know it is in jeopardy, research and development into greener and more sustainable technologies within the chemical and forest products industries is at its peak. Given the global scale of these industries, the need for environmentally benign practices is propelling new green processes. These challenges are also impacting academic research and our reagents of interest are laccases. These enzymes are employed in a variety of biotechnological applications due to their native function as catalytic oxidants. They are about as green as it gets when it comes to chemical processes, requiring O₂ as their only co‐substrate and producing H₂O as the sole by‐product. The following account will review our twenty year journey on the use of these enzymes within our research group, from their initial use in biobleaching of kraft pulps and for fiber modification within the pulp and paper industry, to their current application as green catalytic oxidants in the field of synthetic organic chemistry.     

The Genus Cladosporium: A Rich Source of Diverse and Bioactive Natural Compounds

Fungi are renowned as one of the most fruitful sources of chemodiversity and for their ubiquitous occurrence. Among the many taxonomic groupings considered for the implications deriving from their biosynthetic aptitudes, the genus Cladosporium stands out as one of the most common in indoor environments. A better understanding of the impact of these fungi on human health and activities is clearly based on the improvement of our knowledge of the structural aspects and biological properties of their secondary metabolites, which are reviewed in the present paper.     

Surface modification and property analysis of biomedical polymers used for tissue engineering

The response of host organism in macroscopic, cellular and protein levels to biomaterials is, in most cases, closely associated with the materials’ surface properties. In tissue engineering, regenerative medicine and many other biomedical fields, surface engineering of the bio-inert synthetic polymers is often required to introduce bioactive species that can promote cell adhesion, proliferation, viability and enhanced ECM-secretion functions. Up to present, a large number of surface engineering techniques for improving biocompatibility have been well established, the work of which generally contains three main steps: (1) surface modification of the polymeric materials; (2) chemical and physical characterizations; and (3) biocompatibility assessment through cell culture. This review focuses on the principles and practices of surface engineering of biomedical polymers with regards to particular aspects depending on the authors’ research background and opinions. The review starts with an introduction of principles in designing polymeric biomaterial surfaces, followed by introduction of surface modification techniques to improve hydrophilicity, to introduce reactive functional groups and to immobilize functional protein molecules. The chemical and physical characterizations of the modified biomaterials are then discussed with emphasis on several important issues such as surface functional group density, functional layer thickness, protein surface density and bioactivity. Three most commonly used surface composition characterization techniques, i.e. ATR-FTIR, XPS, SIMS, are compared in terms of their penetration depth. Ellipsometry, CD, EPR, SPR and QCM's principles and applications in analyzing surface proteins are introduced. Finally discussed are frequently applied methods and their principles to evaluate biocompatibility of biomaterials via cell culture. In this section, current techniques and their developments to measure cell adhesion, proliferation, morphology, viability, migration and gene expression are reviewed.     

Enantioseparation of novel psychoactive chiral amines and their mixture by capillary electrophoresis using cyclodextrins as chiral selectors

The prevalence of new psychoactive substances (NPS) has been increasing during the last decade as well as their constant growth of availability across the whole world. Regardless of the potential health hazard, NPS (often racemic compounds) are frequently sought after and abused for their psychoactive effects that may differ for individual enantiomers. In this work, capillary electrophoresis was used for the chiral separation of a mixture of eleven psychoactive chiral amines using β-cyclodextrin and carboxymethyl-β-cyclodextrin as chiral selectors at various concentrations. Chiral separation was successful for all the analytes studied. A mixture of these analytes was subsequently analyzed under optimal conditions, i.e., when using 20 mmol/L carboxymethyl-β-cyclodextrin in 50 mmol/L sodium phosphate buffer, pH 2.5. In this case, chiral separation occurred in nine out of eleven analytes. To our best knowledge, we achieved enantioseparations of seven analyzed compounds by CE for the first time.     

Computational methods for the structural alignment of molecules

In drug design, often enough, no structural information on a particular receptor protein is available. However, frequently a considerable number of different ligands is known together with their measured binding affinities towards a receptor under consideration. In such a situation, a set of plausible relative superpositions of different ligands, hopefully approximating their putative binding geometry, is usually the method of choice for preparing data for the subsequent application of 3D methods that analyze the similarity or diversity of the ligands. Examples are 3D-QSAR studies, pharmacophore elucidation, and receptor modeling. An aggravating fact is that ligands are usually quite flexible and a rigorous analysis has to incorporate molecular flexibility. We review the past six years of scientific publishing on molecular superposition. Our focus lies on automatic procedures to be performed on arbitrary molecular structures. Methodical aspects are our main concern here. Accordingly, plain application studies with few methodical elements are omitted in this presentation. While this review cannot mention every contribution to this actively developing field, we intend to provide pointers to the recent literature providing important contributions to computational methods for the structural alignment of molecules. Finally we provide a perspective on how superposition methods can effectively be used for the purpose of virtual database screening. In our opinion it is the ultimate goal to detect analogues in structure databases of nontrivial size in order to narrow down the search space for subsequent experiments.     

Gut microbiota, diet, and heart disease

Modulation of the gut microbiota is an area of growing interest, particularly for its link to improving and maintaining the systemic health of the host. It has been suggested to have potential to reduce risk factors associated with chronic diseases, such as elevated cholesterol levels in coronary heart disease (CHD). Diets of our evolutionary ancestors were largely based on plant foods, high in dietary fiber and fermentable substrate, and our gut microbiota has evolved against a background of such diets. Therapeutic diets that mimic plant-based diets from the early phases of human evolution may result in drug-like cholesterol reductions. In contrast, typical Western diets low in dietary fiber and fermentable substrate, and high in saturated and trans fatty acids, are likely contributors to the increased need for pharmacological agents for cholesterol reduction. The gut microbiota of those consuming a Western diet are likely underutilized and depleted of metabolic fuels, resulting in a less than optimal gut microbial profile. As a result, this diet is mismatched to our archaic gut microbiota and, therefore, to our genome, which has changed relatively little since humans first appeared. While the exact mechanism by which the gut microbiota may modulate cholesterol levels still remains uncertain, end products of bacterial fermentation, particularly the short chain fatty acids (i.e., propionate), have been suggested as potential candidates. While more research is required to clarify the potential link between gut microbiota and CHD risk reduction, consuming a therapeutic diet rich in plant foods, dietary fiber, and fermentable substrate would be a useful strategy for improving systemic health, possibly by altering the gut microbiota.     

Bioactive Components of Salvia and Their Potential Antidiabetic Properties: A Review

The utilization of therapeutic plants is expanding around the globe, coupled with the tremendous expansion of alternative medicine and growing demand in health treatment. Plants are applied in pharmaceuticals to preserve and expand health—physically, mentally and as well as to treat particular health conditions and afflictions. There are more than 600 families of plants identified so far. Among the plants that are often studied for their health benefit include the genus of Salvia in the mint family, Lamiaceae. This review aims to determine the bioactive components of Salvia and their potential as antidiabetic agents. The search was conducted using three databases (PubMed, EMBASE and Scopus), and all relevant articles that are freely available in the English language were extracted within 10 years (2011–2021). Salvia spp. comprises many biologically active components that can be divided into monoterpenes, diterpenes, triterpenes, and phenolic components, but only a few of these have been studied in-depth for their health benefit claims. The most commonly studied bioactive component was salvianolic acids. Interestingly, S. miltiorrhiza is undoubtedly the most widely studied Salvia species in terms of its effectiveness as an antidiabetic agent. In conclusion, we hope that this review stimulates more studies on bioactive components from medicinal plants, not only on their potential as antidiabetic agents but also for other possible health benefits.