Si~2Cl~6分子的内旋转能垒和振动基频的理论研究

用从头算方法HF/6-31G^*^*和密度函方法B3LYP/6-31G^*^*,对Si~2Cl~6分子的平衡几何构型进行优化,优化的结果与实验结果吻合得较好.并用上述两种不同的方法计算Si~2Cl~6分子的内旋转能垒,结果分别为8.786和6.694kJ/mol,其中DFT方法的计算结果与实验结果4.18kJ/mol吻合得较好.对Si~2Cl~6分子的振动基频进行计算.用HF/6-31G^*^*SQM力场所计算的频率理论值与实验值的平均误差为7.3cm^-^1,用B3LYP/6-31G^*^*未标度的力场所计算的频率理论值与实验值的平均误差为6.0cm^-^1.该密度泛函方法(B3LYP/~6-31G^*^*)的理论计算值比用HF/6-31G^*^*标度后的SQM力场计算的频率与实验值(除Si--Si键扭转振动基频之外的11条振动基频)吻合得更好.并给出了Si--Si键扭转振动基频的预测值。     

Si~2Cl~6分子的内旋转能垒和振动基频的理论研究

用从头算方法HF/6-31G^*^*和密度函方法B3LYP/6-31G^*^*,对Si~2Cl~6分子的平衡几何构型进行优化,优化的结果与实验结果吻合得较好.并用上述两种不同的方法计算Si~2Cl~6分子的内旋转能垒,结果分别为8.786和6.694kJ/mol,其中DFT方法的计算结果与实验结果4.18kJ/mol吻合得较好.对Si~2Cl~6分子的振动基频进行计算.用HF/6-31G^*^*SQM力场所计算的频率理论值与实验值的平均误差为7.3cm^-^1,用B3LYP/6-31G^*^*未标度的力场所计算的频率理论值与实验值的平均误差为6.0cm^-^1.该密度泛函方法(B3LYP/~6-31G^*^*)的理论计算值比用HF/6-31G^*^*标度后的SQM力场计算的频率与实验值(除Si--Si键扭转振动基频之外的11条振动基频)吻合得更好.并给出了Si--Si键扭转振动基频的预测值。     

Si2Br6的分子振动光谱的理论研究

用量化从头算方法(HF/6-31G^*)和密度泛函方法(B3LYP/6-31G^*)以6-31G标准基组加一个极化函数,对Si₂Br₆分子的平衡几何构型和振动频率分别进行优化和计算,优化的结果与实验结果吻合得较好.按照Pulay的建议对HF/6-31G^*水平上所计算的谐性力场进行标度(标度因子取0.9).用HF/6-31G^*SQM力场所计算的基频预测值和实验值的平均误差为9.4cm^-1,最大误差为23.6cm^-1;用B₃LYP/6-31G^*未标度力场所计算的基频预测值和实验值的平均误差为8.6cm^-1,最大误差为16.6cm^-1;用该密度泛函方法所计算的基频预测值比用HF/6-31G^*的标度后的SQM力场所计算的基频预测值和实验值(除Si-Si键扭转振动基频之外的11条振动基频)吻合得更好.HF/6-31G^*和B3LYP/6-31G^*计算给出Si-Si键扭转振动基频的预测值分别为14cm^-1和9cm^-1.     

2,3,7,8-四氯苯并二英分子结构与热力学性质的理论研究

用密度泛函理论(DFT)和从头算(ab initio)方法,在B3LYP/6-31G、 B3LYP/6-31G*、 B3LYP/6-311G*和MP2/6-31G*水平上全优化计算了2,3,7,8-四氯苯并二英(2,3,7,8-TCDD)的几何构型、电子结构和振动频率,并用校正后的频率计算了298～1500 K的标准热力学函数,同时用半经验的PM3 SCF-MO进行了同样的计算,计算结果与实验值及文献值较好地吻合.     

电场作用下分子导线的理论研究

摘要利用从头计算法分别在HF/6-31G, HF/6-31G*, HF/6-31G**, HF/6-31+G, HF/6-31++G, HF/6-31+G*, HF/6-31+G**, HF/D95+*, B3LYP/6-31G*和B3LYP/6-31+G*水平上计算了5个单体的聚乙炔分子导线, 从几何构型、 SCF能量和分子轨道能级三个方面讨论了外电场对分子导线的影响, 给出了聚乙炔分子导线性质与外电场变化的定量关系.     

环境中有机磷污染物碱性的理论研究

有机膦化合物的碱度对深入了解有机膦类污染物的降解有着重要的意义. 发展基于第一性原理的理论方法精确计算有机膦化合物的pKa值有重要意义. 本研究工作发展了精确计算有机膦阳离子化合物pKa值的方法: 用B3LYP/6- 31＋G(d)优化气相结构, PBEPBE计算单点能量, IEFPCM/Bondi (f＝1.0)计算溶剂化能. 理论值与实验值比较, 其平均偏差和均方根差分别为－0.6 pKa单位和0.7 pKa单位. 基于此方法, 我们研究了常见有机膦污染物阳离子的碱性, 定量计算其pKa值. 并进一步讨论了这类化合物的α取代效应和远程取代效应对其碱性的影响, 总结了影响杂环有机膦化合物阳离子酸性的因素.     

琥珀酸二油脂磺酸钠的合成、结构及水合作用

通过增加磺化反应时间, 补加NaHSO3, 以液液萃取法代替重结晶法提纯产品, 大幅度提高了合成琥珀酸二油酯磺酸钠(SDSS)的产品得率. 用量子化学密度泛函理论以及B3LYP/6-31G*方法全优化计算了SDSS阴离子的几何和电子结构, 确证其反反-异构体较为稳定, 解释了以相关反胶束提取蛋白质的实验事实. 还在B3LYP/6-31G*水平上研究了SDSS阴离子的水合作用, 报道了SDSS阴离子水合物的几何、电子结构和水合能, 阐述了SDSS阴离子的亲水机理.     

4-氨基-1,8-萘二酰亚胺的结构及光谱性质的理论研究

采用HF和密度泛函理论中的B3LYP和PBE0方法,在7个不同的基组下优化得到了4-氨基-1,8-萘二酰亚胺(ANI)的基态几何构型,用CIS/6-31+G(d)方法得到第一激发态几何构型,频率分析无虚频.在此基础上运用HF-CIS,TD-B3LYP和TD-PBE0方法研究了在气相及DMSO,DMF,MeCN,THF,CHCl3和EtOH溶剂中ANI的前线轨道及电子光谱.结果表明,HOMO→LUMO的跃迁是π→π*跃迁.随溶剂极性的增加,其最大吸收和荧光波长红移.用TD-B3LYP/6-31+G(d)方法得到的溶剂中ANI的吸收光谱计算值与实验值吻合性较好,但荧光光谱计算值与实验值有较大差异.进一步经线性拟合校正,ANI在非质子溶剂中的计算值与实验值能较好地吻合.计算显示激发态ANI具有较大的偶极矩,与解释相关荧光分子探针的光诱导电子转移方向选择性现象的光生电场理论一致.     

Al6(OH)18(H2O)6的结构及成键方位的从头算及密度泛函分析Ⅱ

用RHF法6-31G、6-31G*、6-31G**水平的量子化学从头算及RB3LYP/6-31G、B3LYP/6-31G*,B3LYP/6-31G**水平的密度泛函方法,采用SCRF=Dipole溶剂模型,计算了三水铝石有利生长基元最优结构Al6(OH)18(H2O)6的总能量、布居数、原子静电荷等.计算结果表明,桥联OH基团更易成键,Al6(OH)18(H2O)6较为有利的成键方位是桥联OH基团方位.     

Theoretical Study on Hydrogen Interaction between 5-Fluorouracil and Glycine

The geometries,electronic structure,IR spectrum and other properties of hydrogen interaction between 5-fluorouracil and glycine were studied at the B3LYP/6-31+G* level.Single point energy calculations were executed at the B3LYP/6-311++G** and B3LYP/aug-cc-pvdz levels,and natural bond orbital (NBO) analysis was carried out at the B3LYP/6-31+G* level.Finally,the hydrogen bonds were discussed via AIM electronic density topology analysis.     

吲哚分子振动光谱的密度泛函理论研究

用多种密度泛函理论(DFT)方法(BLYP/6-31G^*^*,B3LYP/6-31G^*^*,B3PW91/6-31G^*^*和SVWN/6-31G^*^*)对吲哚分子的平衡几何构型进行了优化。在优化构型的基础上计算了吲哚分子的谐力场、振动基频和红外光谱强度。计算得到的振动频率与实验值比较平均偏差对四种计算方法(BLYP/6-31G^*^*,P3LYP/6-31G^*^*,B3PW91/6-31G^*^*和SVWN/6-31G^*^*)分别为16.3,40.5,45.1和26.4cm^-^1。BLYP/6-31G^*^*理论力场被用于吲哚分子的简正坐标分析计算中。根据振动率的势能分布(PEDs)对此分子的振动基频进行了理论归属。     

硝酸甲与硝酸乙酯的结构、振动频率和热力学性质的密度函数 理论(DFT)研究

用密度函数理论(DFT)的BLYP和B3LYP方法,取6-31G,6-31G^*,6-31G^*^*,6-311G,6-311G^*和6-311G^*^*六种基组,对硝酸甲酯和硝酸乙酯的几何构型和红外振动频率进行了计算研究.结果表明,B3LYP方法在采用极化基组(6-31G^*,6-31G^*^*,6-311G^*和6-311G^*^*)时计算得到的结果均较好,适用于硝酸酯类化合物的研究.而BLYP方法无论采用何种基组均不适用;运用校正后的B3LYP/6-31G^*频率(校正因子0.975)计算得到的热力学性质(C^o~p,H^o和S^o)与实验结果较吻合。     

脂肪胺水溶液吸收CO2的热力学参数的密度泛函理论研究

采用密度泛函理论研究CO2在脂肪胺水溶液热力学参数．研究的脂肪胺包括烷基胺、链烷醇胺、二胺以及氨基酰胺．在B3LYP/6-311＋ G（d,p）水平计算脂肪胺在CO2气相中的振动频率．通过连续介质模型在HF/6-31G（d）水平计算了溶剂几何优化的标准自由能,评价了CO2吸收到脂肪胺水溶液过程有关的两个重要参数：酸解离常数和标准焓变二者之间大致呈线性关系．随着胺碱度的提高,CO2吸收过程释放的热量增加,则胺再生所需的能量增加．     

Theoretical studies on the effects of methods and parameterization on the calculated free energy of hydration for small molecules

Free energies of hydration (FEH) have been computed for 13 neutral and nine ionic species as a difference of theoretically calculated Gibbs free energies in solution and in the gas phase. In‐solution calculations have been performed using both SCIPCM and PCM polarizable continuum models at the density functional theory (DFT)/B3LYP and ab initio Hartree–Fock levels with two basis sets (6‐31G* and 6‐311++G**). Good linear correlation has been obtained for calculated and experimental gas‐phase dipole moments, with an increase by ～30% upon solvation due to solute polarization. The geometry distortion in solution turns out to be small, whereas solute polarization energies are up to 3 kcal/mol for neutral molecules. Calculation of free energies of hydration with PCM provides a balanced set of values with 6‐31G* and 6‐311++G** basis sets for neutral molecules and ionic species, respectively. Explicit solvent calculations within Monte Carlo simulations applying free energy perturbation methods have been considered for 12 neutral molecules. Four different partial atomic charge sets have been studied, obtained by a fit to the gas‐phase and in‐solution molecular electrostatic potentials at in‐solution optimized geometries. Calculated FEH values depend on the charge set and the atom model used. Results indicate a preference for the all‐atom model and partial charges obtained by a fit to the molecular electrostatic potential of the solute computed at the SCIPCM/B3LYP/6‐31G* level. © 2004 Wiley Periodicals, Inc. Int J Quantum Chem, 2004     

Theoretical and experimental studies of the spin trapping of inorganic radicals by 5,5-dimethyl-1-pyrroline N-oxide (DMPO). 1. Carbon dioxide radical anion

The carbon dioxide radical anion (CO2*-) is known to be generated in vivo through various chemical and biochemical pathways. Electron paramagnetic resonance (EPR) spin trapping with the commonly used spin trap, 5,5-dimethyl-1-pyrroline N-oxide (DMPO), has been employed in the detection of CO2*-. The thermodynamics of CO2*- addition to DMPO was predicted using density functional theory (DFT) at the B3LYP/6-31++G**//B3LYP/6-31G* and B3LYP/6-311+G* levels with the polarizable continuum model (PCM) to simulate the effect of the bulk dielectric effect of water on the calculated energetics. Three possible products of CO2*- addition to DMPO were predicted: (1) a carboxylate adduct, (2) pyrroline-alcohol and (3) DMPO-OH. Experimentally, UV photolysis of H2O2 in the presence of sodium formate (NaHCO2) and DMPO gave an EPR spectrum characteristic of a C-centered carboxylate adduct and is consistent with the theoretically derived hyperfine coupling constants (hfcc). The pKa of the carboxylate adduct was estimated computationally to be 6.4. The mode of CO2*- addition to DMPO is predicted to be governed predominantly by the spin (density) population on the radical, whereas electrostatic effects are not the dominant factor for the formation of the persistent adduct. The thermodynamic behavior of CO2*- in the aqueous phase is predicted to be similar to that of mercapto radical (*SH), indicating that formation of CO2*- in biological systems may have an important role in the initiation of oxidative damage in cells.     

Superoxide radical anion adduct of 5,5-dimethyl-1-pyrroline N-oxide (DMPO). 3. Effect of mildly acidic pH on the thermodynamics and kinetics of adduct formation

The nitrone, 5,5-dimethylpyrroline N-oxide (DMPO), is a commonly used spin trap for the detection of superoxide radical anion (O2*-) using electron paramagnetic resonance spectroscopy. This work investigates the reactivity of DMPO to O2*- in mildly acidic pH (5.0-7.0). Mild acidity is characteristic of acidosis and has been observed in hypoxic systems, e.g., ischemic organs and cancer cells. Although the established pKa for O2*- is 4.8, the pKa for DMPO is unknown. The pKa of the conjugate acid of DMPO was determined to be 6.0 using potentiometric, spectrophotometric, 1H and 13C NMR, and computational methods. 1H and 13C NMR were employed to investigate the site of protonation. An alternative mechanism for the spin trapping of O2*- in mildly acidic pH was proposed, which involves protonation of the oxygen to form the N-hydroxy imino cation and subsequent addition of O2*-. The exoergicity of O2*- addition to protonated DMPO was rationalized using density functional theory (DFT) at the PCM/B3LYP/6-31+G**//B3LYP/6-31G* level of theory.     

Computation of pKa values of substituted aniline radical cations in dimethylsulfoxide solution

A newly developed computation strategy was used to calculate the absolute pKa values of 18 substituted aniline radical cations in dimethylsulfoxide (DMSO) solution with the error origin elucidated and deviation minimized. The B3LYP/6-311++G(2df,2p) method was applied and was found to be capable of reproducing the gas-phase proton-transfer free energies of substituted anilines with a precision of 0.83 kcal/mol. The IEF-PCM solvation model with gas-phase optimized structures was adopted in calculating the pKa values of the substituted neutral anilines in DMSO, regenerating the experimental results within a standard deviation of 0.4 pKa unit. When the IEF-PCM solvation model was applied to calculate the standard redox potentials of anilide anions, it showed that the computed values agreed well with experiment, but the redox potentials of substituted anilines were systematically overestimated by 0.304 eV. The cause of this deviation was found to be related to the inaccuracy of the calculated solvation free energies of aniline radical cations. By adjusting the size of the cavity in the IEF-PCM method, we derived a reliable procedure that can reproduce the experimental pKa values of aniline radical cations within 1.2 pKa units to those from experiment.     

FC(O)NCS 分子振动光谱的理论研究

采用DFT(B3LYP)方法,以6-3G*为基组对FC(O)NCS的顺式和反式两种构型的几何结构,振动谐性力场和红外光谱进行了研究。B3LYP/6-31G*计算水平和大多数有机分子的一套固定标度因子进行标度。根据标度后的理论力场进行简正坐标分析得到的势能分布(PED)和红外光谱强度值对FC(O)NCS分子的顺式和反式两种构型的振动基频进行了理论归属。     

Ab initio procedure for aqueous-phase pKa calculation: the acidity of nitrous acid

We present an ab initio procedure for accurately calculating aqueous-phase pKa values and apply it to study the acidity of nitrous acid (HNO2, or HONO). The aqueous-phase pK(a) of nitrous acid was obtained from calculated gas-phase acidities and solvation free energies via a thermodynamic cycle and the solvation model chemistry of Barone et al. (J. Chem. Phys. 1997, 107, 3210). Solvation free energies were calculated at the HF/6-31G(d) level using the dielectric-polarizable continuum and the integral equation formalism-polarizable continuum solvent models (D-PCM and IEF-PCM, respectively), with the D-PCM model yielding the most accurate pKa values. For HF free energies of solvation, significant improvements in accuracy could be made by moving to the larger 6-311++G(3df,3pd) and aug-cc-pVQZ basis sets. Solvation free energies were also calculated using the density functional theory (DFT) methods B3LYP, TPSS, PBE0, B1B95, VSXC, B98 and O3LYP, with the most accurate methods being TPSS and VSXC, which provided average errors of less than 0.11 pKa units. Solvation free energies calculated with the different DFT methods were relatively insensitive to the basis set used. Our theoretical calculations are compared with experimental results obtained using stopped flow spectrophotometry. The pKa of nitrous acid was measured as 3.16 at 25 degrees C, and the enthalpy and entropy of nitrous acid dissociation were calculated from measurements as 6.7 kJ mol(-1) and -38.4 J mol(-1) K(-1), respectively, between 25 and 45 degrees C. The UV/visible absorption spectra of the nitrite ion and nitrous acid were also examined, and molar extinction coefficients were obtained for each.