Analysis of sialo-N-glycans in glycoproteins as 1-phenyl-3-methyl-5-pyrazolone derivatives by capillary electrophoresis

A method for the analysis of the sialo-N-glycans in glycoproteins was established by the electrokinetic chromatography mode of capillary electrophoresis (CE) in sodium dodecyl sulfate (SDS) micelles as 1-phenyl-3-methyl-5-pyrazolone (PMP) derivatives, using sialo-N-glycans in fetuin as a model. Six major and some minor peaks were observed for the N-glycans in fetuin, which were well separated from each other using 50 mM phosphate buffer, pH 6.0, containing SDS to a concentration of 30 mM in an uncoated fused-silica capillary, and these peaks were assigned to sialo-N-glycans having either of the biantennary or β1-3/β1-4 linked galactose-containing complex type triantennary N-glycans as the basic structures, by an indirect method based on the assignment of the peaks in high-performance liquid chromatography separated in parallel with CE and peak collation between these two separation methods. The attaching position of the sialic acid residue was determined using the linkage preference of neuraminidase isozymes. The established system is considered to be useful for routine analysis of microheterogeneity of the carbohydrate moiety of this model glycoprotein from the following reasons: (1) the derivatization with PMP proceeds quantitatively under mild conditions without causing release of the sialic acid residue, (2) the derivatives can be sensitively detected by UV absorption, (3) the procedure is simple, rapid and reproducible. Preliminary results of N-glycan analysis for several other glycoproteins under these conditions are also presented.     

Vibrational spectroscopic detection of H-bonded β- and γ-turns in cyclic peptides and glycopeptides

The conformation of N-glycoproteins and N-glycopeptides has been the subject of many spectroscopic studies over the past decades. However, except for some preliminary data, no detailed study on the vibrational spectroscopy of glycosylated peptides has been published until recently.

This paper reports FTIR spectroscopic properties in DMSO and TFE of the N-glycosylated cyclic peptides cyclo[Gly-Pro-Xxx(GlcNAc)-Gly-δ-Ava] 3a and 3b in comparison with data on the non-glycosylated parent peptides cyclo(Gly-Pro-Xxx-Gly-δ-Ava) 2a and 2b [a, Xxx = Asn; b, Xxx = Gln; δ-Ava = NH-(CH₂)₄-CO] and N-acetyl 2-acetamido-2-deoxy-β- -gluco pyranosylamine (GlcNAc-NHAc, 4). The assignment of amide I band frequencies to conformation is based on ROESY experiments and determination of the temperature coefficients in DMSO-d₆ solution. (For the synthesis and NMR characterization of 2a and 3a see Ref. [19].)

Cyclic peptides are expected to adopt folded (β- and/or γ-turn) conformations which may be fixed by intramolecular H-bonding(s). A comparison of the temperature coefficients of the NH protons and amide I band frequencies and intensities suggests that in DMSO there is no significant difference in the backbone conformation and H-bond system of the N-glycosylated models and their parent cyclic peptides. The common feature of the backbone conformation of models 2 and 3 is the predominance of a 1 ← 4 (C₁₀) H-bonded type II β-turn encompassing Pro-Xxx or Pro-Xxx(GlcNAc), respectively. The ROESY connectivities in the Asn(GlcNAc) model (3a) have not been found to reflect intramolecular H-bondings between the peptide and the sugar.

The unique feature of the FTIR spectra in DMSO of the cyclic models is the lack or weakness of low-frequency (< 1640 cm⁻¹) amide I component bands. In TFE the amide I region of the FTIR spectra shows an increased number of components below 1650 cm⁻¹ reflecting a mixture of open and H-bonded β- and γ-turn conformers.

Because of its destabilizing effect upon γ-turns and other weakly H-bonded structures, DMSO decreases the number of backbone conformers. DMSO also destroys side-chain-backbone H-bondings of type C₇, C₆ or C₈. Possible ‘glyco’ C₇ H-bondings in GlcNAc-NHAc (4) or in glycopeptides 3a and 3b cannot resist the effect of DMSO either.

The FTIR data in TFE of models 2–4 suggest that the acceptor amide group of strong C₇ H-bondings in peptides and glycopeptides absorbs at 1630 ± 5 cm⁻¹ and that of bifurcated H-bondings between 1600–1620 cm⁻¹.     

A new route to the indolopyridonaphthyridine ring system: synthesis of N-benzyl-13b,14-dihydronauclefine and N-benzyl-13b,14-dihydroangustine

The indolo[2:3,3':4']pyrido[1,2-b]naphthyridine ring system, which is present in several alkaloids, has been prepared in a single reaction between the lithio derivative of a 3-cyano-4-methylpyridine and N-benzyl-3,4-dihydro-β-carboline in the presence of trimethylsilyl trifluoromethanesulfonate. Using appropriately substituted starting materials, N-benzyl-13b,14-dihydronaucléfine and N-benzyl-13b,14-dihydroangustine have been made in this way. A new preparation of the synthetic intermediate 9-benzyl-3,4-dihydro-β-carboline is also described.     

Molecular and crystal structures of N,N′-propylene- and N,N′-phenylene-diylbis [3-(1-aminoethyl)-6-methyl-2H-pyran-2,4(3H)-dione]

Two macrocyclic ligands, N,N′-propylene-diylbis[3-(1-aminoethyl)-6-methyl-2H-pyran-2,4(3H)-dione] I and N,N′-phenylene-diylbis[3-(1-aminoethyl)-6-methyl-2H-pyran-2,4(3H)-dione] II, have been prepared by the condensation of dehydroacetic acid (3-acetyl-4-hydroxy-6-methyl-2H-pyran-2-one) with 1,2-phenylenediamine and 1,3-propylenediamine. They have been characterized by means of elemental analysis, IR spectroscopy as well as by X-ray crystallography. The molecular structures of the compounds I and II can be described as consisting of two β-enaminone-2-pyrone rings interlaced with either alkyl chain in I or phenyl ring in II. The X-ray studies confirmed the existence of strong N–HO intramolecular hydrogen bonds in both structures. Their lengths are in accordance to lengths of RAHB intramolecular hydrogen bonds in 1,3-diketones, aryl-hydrazones, β-enaminones and related heterodienes (2.5–2.6 Å) [P. Gilli, V. Bertolasi, V. Ferretti and G. Gilli, J. Am. Chem. Soc., 122 (2000) 10405].     

Synthesis of a N-glycan nonasaccharide of the bisecting type with additional core-fucose

A chemical synthesis was developed for N-glycans substituted with core-fucose and an additional bisecting GlcNAc (LEC10 motif). The synthesis was conducted using a suitably functionalized N-glycan pentasaccharide assembled from modular building blocks. Selective introduction of the bisecting GlcNAc residue was followed by attachment of the α1,6-arm and core-fucose. After introduction of an aminohexanoyl spacer the nonasaccharide was completely deprotected providing a substrate for enzymatic elongation and conjugation to proteins for further biological studies.     

Transfer of galactose to the anomeric position of N-acetyl gentosamine by galactosyltransferase from bovine milk

Galactosyltransferase was found to transfer β-galactose to the β-anomeric position of N-acetyl gentosamine to afford a β,β(1,1)-linked disaccharide. The reaction was generalized supposing an N-acetyl recognition site in the active site.     

银杏种子糖蛋白的SDS-PAGE分离及N-糖链的质谱分析

利用十二烷基硫酸钠聚丙烯酰胺凝胶电泳(SDS-PAGE)分离了银杏种子中的糖蛋白组分, 进一步用氨水催化释放N-糖链, 并采用电喷雾离子质谱(ESI-MS)及在线液相色谱-质谱联用(LC-UV-MS/MS²)等技术对胶条上释放的N-糖链进行了定性定量分析. 结果表明, 从银杏种子中分离得到11种糖蛋白, 共检测到11条N-糖链, 包括高甘露糖型(4.88%)和复杂型(95.12%) 2种类型, 其中分子量为21000, 36000和50000的糖蛋白所释放的核心α-1,3-岩藻糖和β-1,2-木糖修饰的N-糖链所占比率较高, 分别为68.23%, 64.37%和75.09%. 本研究对进一步研究银杏糖蛋白功能具有重要意义.     

The analysis of serum effects on structure, size and toxicity of DDAB-DOPE and DC-Chol-DOPE lipoplexes contributes to explain their different transfection efficiency

The effect of serum on structural properties of dimethyl-dioctadecyl-ammonium bromide (DDAB)–1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (DOPE) liposomes and DDAB–DOPE/DNA lipoplexes has been investigated by energy dispersive X-ray diffraction (EDXD) technique, at different cationic lipid/DNA weight ratios (ρ). The role of serum on the size of lipoplexes has also been studied by dynamic light scattering. Lipoplex transfection efficiency (TE) as a function of ρ, and lipoplex toxicity to C6 rat glioma cells have been evaluated in Dulbecco's Modified Eagle Medium (DMEM) with and without serum. A multi-parametric analysis concerning the role of size, structure and cytotoxicity on transfection efficiency contributes to explain the experimental observation that 3β-[N-(N′,N′-dimethylaminoethane)carbamoyl]-cholesterol (DC-Chol)–DOPE/DNA transfect C6 cells better than DDAB–DOPE/DNA lipoplexes.     

Vinyl polymerization of norbornene with nickel catalysts bearing [N,N] six-membered chelate ring: Important influence of ligand structure on activity

Norbornene polymerizations with nickel complexes bearing [N,N] six-membered chelate ring activated with methylaluminoxane were investigated. The influence of ligand structure such as β-diimine, β-diketiminate, fluorinated β-diketiminate, and anilido-imine ligand on catalytic activities for norbornene polymerization was evaluated in detail. Ligands led to different electrophilicity of the nickel metal center, and a relatively positive nickel metal center would result in high catalytic activities for norbornene polymerization. The influences of polymerization temperature and Al/Ni ratio on norbornene polymerization with nickel catalysts bearing β-diimine, β-diketiminate, and fluorinated β-diketiminate ligands were also examined. All of the obtained polymers catalyzed by these nickel catalysts bearing [N,N] ligand are vinylic addition polynorbornenes with different molecular weights.     

Preparation and enantiomer separation behavior of selectively methylated β-cyclodextrin-bonded stationary phases for high performance chromatography

Native and three selectively methylated β-cyclodextrin (β-CD)-bonded stationary phases without an unreacted spacer arm for liquid chromatography were prepared, where heptakis(2-O-methyl)-β-CD, heptakis(3-O-methyl)-β-CD and heptakis(2,3-di-O-methyl)-β-CD were used as the methylated β-CDs. The enantiomer separation abilities of the resulting β-CD stationary phases for 12 pairs of dansylamino acid enantiomers and six pairs of N-3,5-dinitrobenzoyl amino acid methyl esters as model solutes were investigated. The effects of pH and methanol content of the mobile phase on the retention and resolution were examined to optimize the mobile phase conditions. The optimum resolution for the dansylamino acids was achieved using a mobile phase consisting of 1.0% triethylammonium acetate buffer (pH 5.0)–methanol (v/v 4/6) on the β-CD stationary phase. Heptakis(3-O-methyl)- and heptakis(2,3-di-O-methyl)-β-CD-bonded stationary phases showed little enantiomer separation abilities for the dansylamino acids. The heptakis(2-O-methyl)-β-CD-bonded stationary phase exhibited no enantioselectivities for those solutes.

For the N-3,5-dinitrobenzoyl amino acid methyl esters, the optimum resolution was achieved using a mobile phase consisting of 1.0% triethylammonium acetate buffer (pH 5.0)–methanol (v/v 9/1) on a heptakis(2-O-methyl)-β-CD stationary phase. The heptakis(2,3-di-O-methyl)-β-CD-bonded stationary phases exhibited no enantioselectivities for the N-3,5-dinitrobenzoyl amino acid methyl esters. β-CD and heptakis(3-O-methyl)-β-CD-bonded stationary phases had no enantiomer separation abilities for those solutes except for the N-3,5-dinitrobenzoyl phenylalanine methyl ester.     

Intramolecular and intermolecular diels-alder reactions of acylhydrazones derived from methacrolein and ethylacrolein

The intramolecular Diels-Alder reactions of hydrazones derived from methacrolein or ethylacrolein and terminally unsaturated N-acyl-N-methylhydrazines have been investigated. The hydrazones 7b and 7c derived from N-methyl-N-pent-4-enoylhydrazine 3b were found to undergo intramolecular [4 + 2] cycloaddition above 140 °C and the pyridopyridazines 12 were isolated. The corresponding hydrazones 8b and 8c from N-methyl N-pent-4-ynoylhydrazone 4a reacted similarly and gave as the final products the pyridines 13. The scope of the reaction is limited, as was shown by the failure of several other terminally unsaturated hydrazones of β-unsaturated aldehydes to undergo intramolecular cycloaddition. These hydrazones did, however, undergo intermolecular [4 + 2] cyctoaddition to N-phenylmaleimide. Other hydraiones 15 of methacrolein. including the benzoylhydrazone and the phenylhydrazone, also reacted with N-phenylmaleimide to give the pyridine 14b by way of an isolable dihydropyridine 16.     

Supramolecular architecture of cadmium(II)–terephthalate complexes having a tridentate or tetradentate Schiff base as blocking coligand

Two new cadmium(II)–terephthalate complexes, _∞¹{[Cd₂(μ-terephthalate)₂(L¹)₂]·9H₂O} (1) and [{Cd(H₂O)(L²)}₂(μ-terephthalate)](terephthalate) · 10H₂O (2), where L¹ = (E)-N¹,N¹-diethyl-N²-(1-(pyridin-2-yl)ethylidene)ethane-1,2-diamine; L² = N,N′-bis-(1-pyridin-2-yl-ethylidene)-ethane-1,2-diamine; have been synthesized by a conventional solution method. Characterization by single crystal X-ray crystallography shows that compound 1 is composed of 1-D polymeric zig-zag chains with distorted pentagonal-bipyramidal cadmium centers. Compound 2 consists of centrosymmetric dinuclear complexes with a distorted pentagonal-bipyramidal cadmium center in which one terephthalate ligand bridges the metal centres and another terephthalate anion with water of crystallization forms a H-bonding network.     

Structural and spectral characterization of two 1-phenyl-1,2-propanedione bis{N(4)-alkylthiosemicarbazones}

1-phenyl-1,2-propanedione bis{N(4)-methyl- and {N(4)-ethylthiosemicarbazone}, H₂Pm4M and H₂Pm4E, respectively, have been prepared, studied spectroscopically (¹H NMR, ultraviolet and infrared) and their crystal structures solved. Intermoiety hydrogen bonding does not occur in H₂Pm4M and H₂Pm4E, in contrast to the analogous bis{N(4)-thiosemicarbazones} prepared from 1-phenylglyoxal. The two thiosemicarbazone moieties are on the opposite side of the carbon–carbon backbone, but the N(4)Hs intramolecularly hydrogen bond to the imine nitrogen for each moiety.     

Oligoribonucleotide synthesis by the use of 1-(2-cyanoethoxy)ethyl (CEE) as a 2′-hydroxy protecting group

A novel method for the synthesis of oligoribonucleotides using 1-(2-cyanoethoxy)ethyl (CEE) as a 2′-hydroxy protecting group has been developed. A CEE group was introduced to the 2′-position of N-acyl-3′,5′-O-silyl-protected ribonucleosides under acidic conditions in good yields. The 2′-O-CEE group was found to be stable in an aqueous or ethanolic ammonia and was quickly removed by treatment with anhydrous tetrabutylammonium fluoride (TBAF). A combination of the use of N-acyl and 2′-O-CEE protecting groups enabled a reliable and complete two-step deprotection, first with NH₃–EtOH, then with TBAF in THF, without cleavage of internucleotidic linkages.     

Synthesis of a novel azapseudodisaccharide related to allosamidin employing N,N''-diacetylchitobiose as a key starting material

Design and synthesis of a potential chitinase inhibitor 4, related to allosamidin (2), is described. Radical cyclization mediated by tributyltin hydride was applied for the first time to chitobiose-derived oxime ethers 9a,b to give four stereoisomers of an aminocyclopentane derivative connected to an N-acetyl-D-glucosamine residue at C-1 position. The major isomer 10b was efficiently converted into a novel pseudodisaccharide 4 via a series of cyclic-guanidine formation reaction.     

Synthesis of new N-substituted imidazolyl and 1H-1,2,4-triazolyl derivatives of (η-arene)(η-cyclopentadienyl)iron(II) salts

A series of new imidazolyl and 1H-1,2,4-triazolyl derivatives of (η⁶-arene)(η⁵cyclopentadienyl)iron(II) salts have been prepared by reaction of the corresponding chloroarene complexes with the sodium salts of the heterocycles. Good yields of N-substituted products were obtained in all cases under very mild conditions. In contrast to substitution by primary and secondary amines, both chlorines were displaced from [(η⁵-1,2-dichlorobenzene)(η⁵-Cp)Fe][PF₆], indicating electron withdrawal by the imidazolyl and triazolyl groups. Detailed ¹H and ¹³C NMR analysis confirmed this point. NOE difference spectra were used for ¹³C assignments, and evidence for conformational isomers in the 1,2-disubstituted complexes is presented.     

Structural and spectral studies of N-2-(pyridyl)-, N-2-(3-, 4-, 5-, and 6-picolyl)- and N-2-(4,6-lutidyl)-N′-2-thiomethoxyphenylthioureas

Structures of the following compounds have been obtained: N-(2-pyridyl)-N′-2-thiomethoxyphenylthiourea, PyTu2SMe, monoclinic, P2₁/c, a=11.905(3), b=4.7660(8), c=23,532(6) Å, β=95.993(8)°, V=1327.9(5) ų and Z=4; N-2-(3-picolyl)-N′-2-thiomethoxyphenyl-thiourea, 3PicTu2SeMe, monoclinic, C2/c, a=22.870(5), b=7.564(1), c=16.941(4) Å, β=98.300(6)°, V=2899.9(9) ų and Z=8; N-2-(4-picolyl)-N′-2-thiomethoxyphenylthiourea, 4PicTu2SMe, monoclinic P2₁/a, a=9.44(5), b=18.18(7), c=8.376(12) Å, β=91.62(5)°, V=1437(1) ų and Z=4; N-2-(5-picolyl)-N′-2-thiomethoxyphenylthiourea, 5PicTu2SMe, monoclinic, C2/c, a=21.807(2), b=7.5940(9), c=17.500(2) Å, β=93.267(6)°, V=2893.3(5) ų and Z=8; N-2-(6-picolyl)-N′-2-thiomethoxyphenylthiourea, 6PicTu2SMe, monoclinic, P2₁/c, a=8.499(4), b=7.819(2), c=22.291(8) Å, β=90.73(3)°, V=1481.2(9) ų and Z=4 and N-2-(4,6-lutidyl)-N′-2-thiomethoxyphenyl-thiourea, 4,6LutTu2SMe, monoclinic, P2₁/c, a=11.621(1), b=9.324(1), c=14.604(1) Å, β=96.378(4)°, V=1572.4(2) ų and Z=4. Comparisons with other N-2-pyridyl-N′-arylthioureas having substituents in the 2-position of the aryl ring are included.     

Ionic addition of t-butyl N,N-dibromocarbamate (BBC) to alkenes and cycloalkenes

The addition of t-butyl N,N-dibromocarbamate (BBC) to alkenes and cycloalkenes in the presence of BF₃·Et₂O proceeds smoothly at −20°C in CH₂Cl₂ affording upon reduction with aqueous Na₂SO₃ the corresponding β-bromo-N-Boc-amines. Immediate deprotection of these adducts with gaseous HCl yields β-bromoamine hydrochlorides in moderate yields. The regioselectivity typical for Markovnikov addition was observed for styrene. Stereospecific anti-addition of BBC to cyclohexene and (E)-hex-3-ene, as proven by ¹H NMR evidence, is compatible with an ionic addition pathway and can be rationalized by assuming the intermediate complex formation between BBC and BF₃.     

Unusual nonreducing sugar GlcNAcβ(1↔1)Manβ formation by β-N-acetylhexosaminidase from Aspergillus oryzae

β-N-Acetylhexosaminidase from Aspergillus oryzae catalyzes the transfer of N-acetylglucosamine moiety from pNP-β-GlcNAc to mannose giving major product GlcNAcβ(1↔1)Manβ (1a), and GlcNAcβ(1→3)Man/β (2a) and GlcNAcβ(1→6)Man/β (3a) as two minor products.     

Reactions of metalloalkynes VII. Protonation of ruthenium ethyne-1,2-diyl complexes

The acid–base chemistry of some ruthenium ethyne-1,2-diyl complexes, [{Ru(CO)₂(η-C₅H₄R)}₂(μ₂-CC)] (R=H, Me) has been investigated. Initial protonation of [{Ru(CO)₂{η-C₅H₄R}}₂(μ₂-CC)] gave the unexpected complex cation, crystallised as the BF₄ salt, [{Ru(CO)₂(η-C₅H₄R}}₃(μ₃-CC)][BF₄] (R=Me structurally characterised). This synthesis proved to be unreliable but subsequent, careful protonation experiments gave excellent yields of the protonated ethyne-1,2-diyl complexes, [{Ru(CO)₂{η-C₅H₄R)}₂(μ₂-η¹:η²-CCH)](BF₄) (R=Me structurally characterised) which could be deprotonated in high yield to return the starting ethyne-1,2-diyl complexes.