Thermal reactions of anti- and syn-dispiro[5.0.5.2]tetradeca-1,8-dienes: stereomutation and fragmentation to 3-methylcyclohexenes. Entropy-dictated product ratios from diradical intermediates?

A series of cyclobutanes substituted 1,2- by polyenes of increasing radical-stabilizing power has been investigated to test the proposition that stabilization energies obtained independently from apposite, cis,trans geometric isomerizations can be successfully transferred to another system, in this paper, cyclobutanes. The first member of the series, 3-methylenecyclohexene (1), is photodimerized to anti- and syn-dispiro[5.0.5.2]tetradeca-1,8-dienes (anti-2 and syn-2), which undergo stereomutation (stereochemical interconversion) and cycloreversion (fragmentation) to 1 when heated in the range 72.1-118.2 degrees C: anti-2 --> syn-2, DeltaH() = 30.3 kcal mol(-)(1), DeltaS() = 0.2 cal mol(-)(1) K(-)(1); anti-2 --> 1, DeltaH() = 32.8 kcal mol(-)(1), DeltaS() = +8.0 cal mol(-)(1) K(-)(1). Agreement with an enthalpy of activation predicted by assuming full allylic stabilization in a hypothetical diradical intermediate is good. An example of further activation by a radical-stabilizing group is manifested by the approximately 20 000-fold acceleration in rate shown by the system 1-phenyl-3-methylenecyclohexene (3) and anti- and syn-2,9-diphenyldispiro[5.0.5.2]tetradeca-1,8-dienes (anti-4 and syn-4), measured, however, only at 43.6 degrees C. In both systems 2 and 4, volumes of activation for stereochemical interconversion and cycloreversion have been determined and found to be essentially identical within experimental uncertainties, DeltaV() = +10.2 +/- 1.0 and +12.6 +/- 1.4 cm(3) mol(-)(1), respectively (weighted means). These strongly positive values are consistent with the rate-determining step being the first bond-breaking, while the near identity of the volumes of activation argues against the indispensable second bond-breaking being a determining factor in fragmentation. These results are consistent with the theoretically based construct of Charles Doubleday for the paradigm, cyclobutane, in which the ratio between two channels of exit from a "generalized common biradical" is not controlled by enthalpy and entropy, as in the transition state model, but by entropy alone.     

Thermodynamic and ab initio analysis of the controversial enthalpy of formation of formaldehyde.

There are two values, -26.0 and -27.7 kcal mol(-1), that are routinely reported in literature evaluations for the standard enthalpy of formation, Delta(f) H(o)(298), of formaldehyde (CH(2)=O), where error limits are less than the difference in values. In this study, we summarize the reported literature for formaldehyde enthalpy values based on evaluated measurements and on computational studies. Using experimental reaction enthalpies for a series of reactions involving formaldehyde, in conjunction with known enthalpies of formation, its enthalpy is determined to be -26.05+/-0.42 kcal mol(-1), which we believe is the most accurate enthalpy currently available. For the same reaction series, the reaction enthalpies are evaluated using six computational methods: CBS-Q, CBS-Q//B3, CBS-APNO, G2, G3, and G3B3 yield Delta(f) H(o)(298)=-25.90+/-1.17 kcal mol(-1), which is in good agreement to our experimentally derived result. Furthermore, the computational chemistry methods G3, G3MP2B3, CCSD/6-311+G(2df,p)//B3LYP/6-31G(d), CCSD(T)/6-311+G(2df,p)//B3LYP/6-31G(d), and CBS-APNO in conjunction with isodesmic and homodesmic reactions are used to determine Delta(f) H(o)(298). Results from a series of five work reactions at the higher levels of calculation are -26.30+/-0.39 kcal mol(-1) with G3, -26.45+/-0.38 kcal mol(-1) with G3MP2B3, -26.09+/-0.37 kcal mol(-1) with CBS-APNO, -26.19+/-0.48 kcal mol(-1) with CCSD, and -26.16+/-0.58 kcal mol(-1) with CCSD(T). Results from heat of atomization calculations using seven accurate ab initio methods yields an enthalpy value of -26.82+/-0.99 kcal mol(-1). The results using isodesmic reactions are found to give enthalpies more accurate than both other computational approaches and are of similar accuracy to atomization enthalpy calculations derived from computationally intensive W1 and CBS-APNO methods. Overall, our most accurate calculations provide an enthalpy of formation in the range of -26.2 to -26.7 kcal mol(-1), which is within computational error of the suggested experimental value. The relative merits of each of the three computational methods are discussed and depend upon the accuracy of experimental enthalpies of formation required in the calculations and the importance of systematic computational errors in the work reaction. Our results also calculate Delta(f) H(o)(298) for the formyl anion (HCO(-)) as 1.28+/-0.43 kcal mol(-1).     

Experimental determination of the alpha and beta C--H bond dissociation energies in naphthalene

The acidities of the two different sites in naphthalene (1alpha and 1beta) and the electron affinities of the alpha- and beta-naphthyl radicals were measured using a Fourier transform mass spectrometer. Both carbon-hydrogen bond dissociation energies for naphthalene also were obtained, in this case via the application of a thermodynamic cycle. The final results are DeltaH(o)acid (1alpha) = 394.2+/-1.2 kcal mol(-1), DeltaH(o)acid (1beta) = 395.5+/-1.3 kcal mol(-1), EA(alpha) = 31.6+/-0.5 kcal mol(-1), EA(beta) = 31.6+/-0.5 kcal mol(-1), BDE(1alpha) = 112.2+/-1.3 kcal mol(-1) and BDE(1alpha) = 111.9+/-1.4 kcal mol(-1), and they are compared to benzene and phenyl radical as well as ab initio and density functional theory (B3LYP) calculations.     

Calorimetrically measurable enthalpic isotope effect

Calorimetric techniques have revealed that the enthalpy of reaction with water is more exothermic by about 2.2 kcal/mol, for the perdeuteriated naphthalene anion radical (K+C10D8*-(s) + H2O(liq) --> 1/2C10D8H2(s) + 1/2C10D8(s) + KOH(aq)) than it is for the perprotiated system. These results, when coupled with the known enthalpy of electron transfer between naphthalene and its perdeuteriated analogue imply that the heat of hydrogenation of naphthalene decreases by about 1.8 kcal/mol upon perdeuteriation of the naphthalene.     

Benzocyclobutene: The Impact of Fusing a Strained Ring onto Benzene

The gas-phase acidities of the two aromatic sites in benzocyclobutene were measured in a Fourier transform mass spectrometer using a kinetic technique (i.e., the DePuy method). Fusion of a cyclobutane ring onto benzene is found to have a slight acidifying effect at the alpha-position (3.2 +/- 1.7 kcal mol(-)(1)) and little, if any, influence on the beta-site (0.8 +/- 1.9 kcal mol(-)(1)). Energetic data (DeltaH degrees (acid) = 386.2 +/- 3.0 kcal mol(-)(1), EA = 0.84 +/- 0.11 eV, and C-H BDE = 92 +/- 4 kcal mol(-)(1)) for the benzylic position were obtained via the bracketing technique and application of a thermodynamic cycle. Differences in the reactivities of the three conjugate bases also were explored. Ab initio and density functional theory calculations were carried out to provide geometries, energies, and insights into the carbanions' electronic structures.     

Reaction mechanism and tautomeric equilibrium of 2-mercaptopyrimidine in the gas phase and in aqueous solution: a combined Monte Carlo and quantum mechanics study

A combined Monte Carlo and quantum mechanical study was carried out to analyze the tautomeric equilibrium of 2-mercaptopyrimidine in the gas phase and in aqueous solution. Second- and fourth-order M?ller-Plesset perturbation theory calculations indicate that in the gas phase thiol (Pym-SH) is more stable than the thione (Pym-NH) by ca. 8 kcal/mol. In aqueous solution, thermodynamic perturbation theory implemented on a Monte Carlo NpT simulation indicates that both the differential enthalpy and Gibbs free energy favor the thione form. The calculated differential enthalpy is DeltaH(SH)(-->)(NH)(solv) = -1.7 kcal/mol and the differential Gibbs free energy is DeltaG(SH)(-->)(NH)(solv) = -1.9 kcal/mol. Analysis is made of the contribution of the solute-solvent hydrogen bonds and it is noted that the SH group in the thiol and NH group in the thione tautomers act exclusively as a hydrogen bond donor in aqueous solution. The proton transfer reaction between the tautomeric forms was also investigated in the gas phase and in aqueous solution. Two distinct mechanisms were considered: a direct intramolecular transfer and a water-assisted mechanism. In the gas phase, the intramolecular transfer leads to a large energy barrier of 34.4 kcal/mol, passing through a three-center transition state. The proton transfer with the assistance of one water molecule decreases the energy barrier to 17.2 kcal/mol. In solution, these calculated activation barriers are, respectively, 32.0 and 14.8 kcal/mol. The solvent effect is found to be sizable but it is considerably more important as a participant in the water-assisted mechanism than the solvent field of the solute-solvent interaction. Finally, the calculated total Gibbs free energy is used to estimate the equilibrium constant.     

Temperature effects on the catalytic activity of the D38E mutant of 3-oxo-Delta5-steroid isomerase: favorable enthalpies and entropies of activation relative to the nonenzymatic reaction catalyzed by acetate ion

3-oxo-Delta5-steroid isomerase (ketosteroid isomerase, KSI) catalyzes the isomerization of 5-androstene-3,17-dione (1) to 4-androstene-3,17-dione (3) via a dienolate intermediate (2-). KSI catalyzes this conversion about 13 orders of magnitude faster than the corresponding reaction catalyzed by acetate ion, a difference in activation energy (DeltaG) of approximately 18 kcal/mol. To evaluate whether the decrease in DeltaG by KSI is due to enthalpic or entropic effects, the activation parameters for the isomerization of 1 catalyzed by the D38E mutant of KSI were determined. A linear Arrhenius plot of kcat/KM versus 1/T gives the activation enthalpy (DeltaH = 5.9 kcal/mol) and activation entropy (TDeltaS = -2.6 kcal/mol). Relative to catalysis by acetate, D38E reduces DeltaH by approximately 10 kcal/mol and increases TDeltaS by approximately 5 kcal/mol. The activation parameters for the microscopic rate constants for D38E catalysis were also determined and compared to those for the acetate ion-catalyzed reaction. Enthalpic stabilization of 2- and favorable entropic effects in both chemical transition states by D38E result in an overall energetically more favorable enzymatic reaction relative to that catalyzed by acetate ion.     

The ozonolysis of acetylene--a quantum chemical investigation.

The ozonolysis of acetylene was investigated using CCSD(T), CASPT2, and B3LYP-DFT in connection with a 6-311+G(2d,2p) basis set. The reaction is initiated by the formation of a van der Waals complex followed by a [4pi + 2pi] cycloaddition between ozone and acetylene (activation enthalpy DeltaH(a)(298) = 9.6 kcal/mol; experiment, 10.2 kcal/mol), yielding 1,2,3-trioxolene, which rapidly opens to alpha-ketocarbonyl oxide 5. Alternatively, an O atom can be transferred from ozone to acetylene (DeltaH(a)(298) = 15.6 kcal/mol), thus leading to formyl carbene, which can rearrange to oxirene or ketene. The key compound in the ozonolysis of acetylene is 5 because it is the starting point for the isomerization to the corresponding dioxirane 19 (DeltaH(a)(298) = 16.9 kcal/mol), for the cyclization to trioxabicyclo[2.1.0]pentane 10 (DeltaH(a)(298) = 19.5 kcal/mol), for the formation of hydroperoxy ketene 15 (DeltaH(a)(298) = 20.6 kcal/mol), and for the rearrangement to dioxetanone 9 (DeltaH(a)(298) = 23.6 kcal/mol). Compounds 19, 10, 15, and 9 rearrange or decompose with barriers between 13 and 16 kcal/mol to yield as major products formanhydride, glyoxal, formaldehyde, formic acid, and (to a minor extent) glyoxylic acid. Hence, the ozonolysis of acetylene possesses a very complicated reaction mechanism that deserves intensive experimental studies.     

Gas-phase acidity studies of multiple sites of adenine and adenine derivatives

The acidities of multiple sites in the purine nucleobase adenine (1) and adenine alkyl derivatives 9-ethyladenine (2), 3-methyladenine (3), 1-methyladenine (4), and N,N-dimethyladenine (5) have been investigated for the first time, using computational and experimental methods to provide an understanding of adenine reactivity. We have previously measured two acidic sites on adenine, with the N9 site being 19 kcal mol(-)(1) more acidic than the N10 site (333 +/- 2 versus 352 +/- 4 kcal mol(-)(1), respectively). In this work, we have established that 9-ethyladenine has two sites more acidic than water: the N10 (352 +/- 4 kcal mol(-)(1)) and the C8 (374 +/- 2 kcal mol(-)(1)). We have likewise measured two acidities for 3-methyladenine, the N10 (347 +/- 4 kcal mol(-)(1)) and the C2 (370 +/- 3 kcal mol(-)(1)). For 1-methyladenine and N,N-dimethyladenine, we measure the N9H acidity to be 331 +/- 2 and 333 +/- 2 kcal mol(-)(1), respectively. We believe that the bracketing of only one site for the latter species is a kinetic effect, which we discuss further in the paper. Computationally, we have found the interesting result that some of the vinylic C-H sites in these purine bases are predicted to be much more acidic than water (DeltaH(acid) = 390.7 kcal mol(-)(1)) in the gas phase, on the order of 373 kcal mol(-)(1). The acidic vinylic C-H sites are always adjacent to an N-R group, and this pattern is maintained regardless of whether the site is on the five- or six-membered ring of the purine. Vinylic C-H sites elsewhere on the purine have calculated acidities of about 400 kcal mol(-)(1). The differing acidities are interpreted through electrostatic potential calculations. We also relate our results to the intriguing biochemical decarboxylation of orotate ribose monophosphate, which involves a vinylic anion adjacent to an N-R group; this decarboxylation is the last step in the de novo biosynthesis of pyrimidine nucleotides, and the enzyme that catalyzes the reaction, orotate ribose monophosphate decarboxylase, has been the subject of intense study recently, as its mechanism remains elusive.     

Thermodynamic and kinetic studies of H atom transfer from HMo(CO)3(eta(5)-C5H5) to Mo(N[t-Bu]Ar)3 and (PhCN)Mo(N[t-Bu]Ar)3: direct insertion of benzonitrile into the Mo-H bond of HMo(N[t-Bu]Ar)3 forming (Ph(H)C=N)Mo(N[t-Bu]Ar)3

Synthetic studies are reported that show that the reaction of either H2SnR2 (R = Ph, n-Bu) or HMo(CO)3(Cp) (1-H, Cp = eta(5)-C5H5) with Mo(N[t-Bu]Ar)3 (2, Ar = 3,5-C6H3Me2) produce HMo(N[t-Bu]Ar)3 (2-H). The benzonitrile adduct (PhCN)Mo(N[t-Bu]Ar)3 (2-NCPh) reacts rapidly with H2SnR2 or 1-H to produce the ketimide complex (Ph(H)C=N)Mo(N[t-Bu]Ar)3 (2-NC(H)Ph). The X-ray crystal structures of both 2-H and 2-NC(H)Ph are reported. The enthalpy of reaction of 1-H and 2 in toluene solution has been measured by solution calorimetry (DeltaH = -13.1 +/- 0.7 kcal mol(-1)) and used to estimate the Mo-H bond dissociation enthalpy (BDE) in 2-H as 62 kcal mol(-1). The enthalpy of reaction of 1-H and 2-NCPh in toluene solution was determined calorimetrically as DeltaH = -35.1 +/- 2.1 kcal mol(-1). This value combined with the enthalpy of hydrogenation of [Mo(CO)3(Cp)]2 (1(2)) gives an estimated value of 90 kcal mol(-1) for the BDE of the ketimide C-H of 2-NC(H)Ph. These data led to the prediction that formation of 2-NC(H)Ph via nitrile insertion into 2-H would be exothermic by approximately 36 kcal mol(-1), and this reaction was observed experimentally. Stopped flow kinetic studies of the rapid reaction of 1-H with 2-NCPh yielded DeltaH(double dagger) = 11.9 +/- 0.4 kcal mol(-1), DeltaS(double dagger) = -2.7 +/- 1.2 cal K(-1) mol(-1). Corresponding studies with DMo(CO)3(Cp) (1-D) showed a normal kinetic isotope effect with kH/kD approximately 1.6, DeltaH(double dagger) = 13.1 +/- 0.4 kcal mol(-1) and DeltaS(double dagger) = 1.1 +/- 1.6 cal K(-1) mol(-1). Spectroscopic studies of the much slower reaction of 1-H and 2 yielding 2-H and 1/2 1(2) showed generation of variable amounts of a complex proposed to be (Ar[t-Bu]N)3Mo-Mo(CO)3(Cp) (1-2). Complex 1-2 can also be formed in small equilibrium amounts by direct reaction of excess 2 and 1(2). The presence of 1-2 complicates the kinetic picture; however, in the presence of excess 2, the second-order rate constant for H atom transfer from 1-H has been measured: 0.09 +/- 0.01 M(-1) s(-1) at 1.3 degrees C and 0.26 +/- 0.04 M(-1) s(-1) at 17 degrees C. Study of the rate of reaction of 1-D yielded kH/kD = 1.00 +/- 0.05 consistent with an early transition state in which formation of the adduct (Ar[t-Bu]N)3Mo...HMo(CO)3(Cp) is rate limiting.     

Thermal decomposition of HO2NO2 (peroxynitric acid, PNA): rate coefficient and determination of the enthalpy of formation

Rate coefficients for the gas-phase thermal decomposition of HO(2)NO(2) (peroxynitric acid, PNA) are reported at temperatures between 331 and 350 K at total pressures of 25 and 50 Torr of N(2). Rate coefficients were determined by measuring the steady-state OH concentration in a mixture of known concentrations of HO(2)NO(2) and NO. The measured thermal decomposition rate coefficients k(-)(1)(T,P) are used in combination with previously published rate coefficient data for the HO(2)NO(2) formation reaction to yield a standard enthalpy for reaction 1 of Delta(r)H degrees (298K) = -24.0 +/- 0.5 kcal mol(-1) (uncertainties are 2sigma values and include estimated systematic errors). A HO(2)NO(2) standard heat of formation, Delta(f)H degrees (298K)(HO(2)NO(2)), of -12.6 +/- 1.0 kcal mol(-1) was calculated from this value. Some of the previously reported data on the thermal decomposition of HO(2)NO(2) have been reanalyzed and shown to be in good agreement with our reported value.     

Corannulene as a Lewis base: computational modeling of protonation and lithium cation binding.

A computational modeling of the protonation of corannulene at B3LYP/6-311G(d,p)//B3LYP/6-311G(d,p) and of the binding of lithium cations to corannulene at B3LYP/6-311G(d,p)//B3LYP/6-31G(d,p) has been performed. A proton attaches preferentially to one carbon atom, forming a sigma-complex. The isomer protonated at the innermost (hub) carbon has the best total energy. Protonation at the outermost (rim) carbon and at the intermediate (bridgehead rim) carbon is less favorable by ca. 2 and 14 kcal mol(-)(1), respectively. Hydrogen-bridged isomers are transition states between the sigma-complexes; the corresponding activation energies vary from 10 to 26 kcal mol(-)(1). With an empirical correction obtained from calculations on benzene, naphthalene, and azulene, the best estimate for the proton affinity of corannulene is 203 kcal mol(-)(1). The lithium cation positions itself preferentially over a ring. There is a small energetic preference for the 6-ring over the 5-ring binding (up to 2 kcal mol(-)(1)) and of the convex face over the concave face (3-5 kcal mol(-)(1)). The Li-bridged complexes are transition states between the pi-face complexes. Movement of the Li(+) cation over either face is facile, and the activation energy does not exceed 6 kcal mol(-)(1) on the convex face and 2.2 kcal mol(-)(1) on the concave face. In contrast, the transition of Li(+) around the corannulene edge involves a high activation barrier (24 kcal mol(-)(1) with respect to the lowest energy pi-face complex). An easier concave/convex transformation and vice versa is the bowl-to-bowl inversion with an activation energy of 7-12 kcal mol(-)(1). The computed binding energy of Li(+) to corannulene is 44 kcal mol(-)(1). Calculations of the (7)Li NMR chemical shifts and nuclear independent chemical shifts (NICS) have been performed to analyze the aromaticity of the corannulene rings and its changes upon protonation.     

Thermochemistry of the hypobromous and hypochlorous acids, HOBr and HOCl

The enthalpies of formation of HOBr and HOCl have been estimated by employing coupled cluster theory in conjunction with the correlation consistent basis sets and corrections for core-valence, relativistic, and anharmonic effects. We have employed three different reactions to estimate the DeltaH(o)(f,298)(HOBr), namely, the atomization reaction and two homodesmic reactions. Our best estimation is DeltaH(o)(f,298) (HOBr) = -15.3 +/- 0.6 kcal/mol and is very likely to lie toward the more negative values. The present value is 1.4 kcal/mol lower than the widely used experimental determination of Ruscic and Berkowitz (J. Chem. Phys. 1994, 101, 7795), DeltaH(o)(f,298)(HOBr) > -13.93 +/- 0.42 kcal/mol. However, it is closer to the more recent measurement of Lock et al. (J. Phys. Chem. 1996, 100, 7972), DeltaH(o)(f,298)(HOBr) = -14.8 +/- 1 kcal/mol. In the case of HOCl we have determined DeltaH(o)(f,298)(HOCl) = -18.1 +/- 0.3 kcal/mol, just in the middle of the two experimental values proposed, -17.8 +/- 0.5 kcal/mol (JANAF), obtained from equilibrium constant measurements, and -18.36 +/- 0.03 kcal/mol (Joens, J. A. J. Phys. Chem. A 2001, 105, 11041), determined from the measurements of the Cl-OH bond energy. If our conclusions are correct, several enthalpies of formation that have been determined by experimental chemists, Orlando and Burholder (J. Phys. Chem. 1995, 99, 1143), and theoretical chemists, Lee (J. Phys. Chem. 1995, 99, 15074), need to be revised, since a larger value was used for DeltaH(o)(f,298)(HOBr). Employing the results obtained by Orlando and Burkholder for Br(2)O we propose DeltaH(o)(f,298)(Br(2)O) = 24.9 +/- 0.6 kcal/mol, and employing Lee's enthalpies of reaction we propose the following DeltaH(o)(f,298): for BrBrO, HBrO, ClOBr, ClBrO, BrClO, BrCN, BrNC, BrNO, BrON, FOBr, and FBrO, 39.5 +/- 1, 41.0 +/- 1, 22.7 +/- 1.5, 34.2 +/- 1.5, 40.9 +/- 1.5, 43.7 +/- 1.5, 80.1 +/- 1.5, 22.3 +/- 1, 46.2 +/- 1, 17.3 +/- 1.5, and 6.3 +/- 1.5 kcal/mol, respectively. We expect that this work will stimulate new experimental measurements of the thermodynamic properties of HOBr and HOCl.     

Transition state characterization for the reversible binding of dihydrogen to bis(2,2'-bipyridine)rhodium(I) from temperature- and pressure-dependent experimental and theoretical studies

Thermodynamic and kinetic parameters for the oxidative addition of H2 to [Rh(I)(bpy)2]+ (bpy = 2,2'-bipyridine) to form [Rh(III)(H)2(bpy)2]+ were determined from either the UV-vis spectrum of equilibrium mixtures of [Rh(I)(bpy)2]+ and [Rh(III)(H)2(bpy)2]+ or from the observed rates of dihydride formation following visible-light irradiation of solutions containing [Rh(III)(H)2(bpy)2]+ as a function of H2 concentration, temperature, and pressure in acetone and methanol. The activation enthalpy and entropy in methanol are 10.0 kcal mol(-1) and -18 cal mol(-1) K(-1), respectively. The reaction enthalpy and entropy are -10.3 kcal mol(-1) and -19 cal mol(-1) K(-1), respectively. Similar values were obtained in acetone. Surprisingly, the volumes of activation for dihydride formation (-15 and -16 cm(3) mol(-1) in methanol and acetone, respectively) are very close to the overall reaction volumes (-15 cm(3) mol(-1) in both solvents). Thus, the volumes of activation for the reverse reaction, elimination of dihydrogen from the dihydrido complex, are approximately zero. B3LYP hybrid DFT calculations of the transition-state complex in methanol and similar MP2 calculations in the gas phase suggest that the dihydrogen has a short H-H bond (0.823 and 0.810 Angstroms, respectively) and forms only a weak Rh-H bond (1.866 and 1.915 Angstroms, respectively). Equal partial molar volumes of the dihydrogenrhodium(I) transition state and dihydridorhodium(III) can account for the experimental volume profile found for the overall process.     

Enthalpies of hydrogen-bonds in alpha-helical peptides. An ONIOM DFT/AM1 study

We report the enthalpy differences between alpha-helical and extended beta-strand conformations of acetyl(Ala)nNH2, for n = 8, 10, 12-17, calculated using molecular (MO) orbital theory from complete vibrational analyses of the optimized species. The calculations used the ONIOM method with B3LYP/D95(d.p) as the high and AM1 as the low levels. The incremental change in enthalpy upon addition of one Ala to a growing beta-strand defined using the hypothetical polycondensation reaction, n Ala + CH3COOH + NH3 --> acetyl(Ala)nNH2 + n H2O, reaches its asymptotic limit of -1.4 kcal/mol at n = 10, while that for the alpha-helix continues to increase in magnitude at n = 17. The asymptotic limit of the enthalpic preference of the alpha-helix over beta-strand is estimated to be about 3 kcal/mol, while that for n = 17 is 11.99 kcal/mol or about 0.8 kcal/mol/H-bond, which is similar to measured values for polyalanines of this size in aqueous solution.     

Time-resolved photoacoustics study of the ruthenium(II) bis(2,2'-bipyridine)(4,4'-dicarboxy-2,2'-bipyridine) complex

The formation and the decay of the triplet metal to ligand charge transfer state ((3)MLCT) of ruthenium(II) bis(2,2'-bipyridine)(4,4'-dicarboxy-2,2'-bipyridine) (Ru(bpy)(2)(dcbpy)) were characterized using photoacoustic calorimetry. At pH 6 and 2, the (3)MLCT state formation leads to a volume change of -8 mL mol(-1) and enthalpy changes of 17 kcal mol(-1) and 13 kcal mol(-1), respectively. We attribute the volume contraction to structural changes and to solvent electrostriction. At pH 4, the photoexcitation of the complex leads to an expansion of 14 mL mol(-1) and an enthalpy change of approximately 119 kcal mol(-1) due to protonation of the carboxyl group in the excited state.     

Remarkable dynamical opening and closing of platinum and palladium pentaruthenium carbido carbonyl cluster complexes

The reaction of Ru(5)(CO)(15)(mu(5)-C), 1, with Pt(PBu(t)(3))(2) at room temperature yielded the mixed-metal cluster complex PtRu(5)(CO)(15)(PBu(t)(3))(C), 2, in 52% yield. Compound 2 consists of a mixture of two interconverting isomers in solution. One isomer, 2A, can be isolated by crystallization from benzene/octane solvent. The second isomer, 2B, can be isolated by crystallization from diethyl ether. Both were characterized crystallographically. Isomer 2A consists of a square pyramidal cluster of five ruthenium atoms with a phosphine-substituted platinum atom spanning the square base. Isomer 2B consists of a square pyramidal cluster of five ruthenium atoms with a phosphine-substituted platinum atom on an edge on the square base. The two isomers interconvert rapidly on the NMR time scale at 40 degrees C, deltaG(313)++ = 11.4(8) kcal mol(-1), deltaH++ = 8.8(5) kcal mol(-1), deltaS++ = -8.4(9) cal mol(-1) K(-1). The reaction of Pd(PBu(t)(3))(2) with compound 1 yielded two new cluster complexes: PdRu(5)(CO)(15)(PBu(t)(3))(mu(6)-C), 3, in 50% yield and Pd(2)Ru(5)(CO)(15)(PBu(t)(3))(2)(mu(6)-C), 4, in 6% yield. The yield of 4 was increased to 47% when an excess of Pd(PBu(t)(3))(2) was used. In the solid state compound 3 is structurally analogous to 2A, but in solution it also exists as a mixture of interconverting isomers; deltaG(298)++ = 10.6(6) kcal mol(-1), deltaH++ = 9.7(3) kcal mol(-1), and deltaS++ = -3(1) cal mol(-1) K(-1) for 3. Compound 4 contains an octahedral cluster consisting of one palladium atom and five ruthenium atoms with an interstitial carbido ligand in the center of the octahedron, but it also has one additional Pd(PBu(t)(3)) grouping that is capping a triangular face of the ruthenium cluster. The Pd(PBu(t)(3)) groups in 4 also undergo dynamical interchange that is rapid on the NMR time scale at 25 degrees C; deltaG(298)++ = 11(1) kcal mol(-1), deltaH++ = 10.2(4) kcal mol(-1), and deltaS++ = -3(2) cal mol(-1) K(-1) for 4.     

Theoretical studies on alkyne addition to molybdenum alkylidenes: the preference of alpha- and beta-additions.

The addition of alkynes HC=CR to Mo(NH)(CH(2))(OR')(2) (R = H, Me, Ph; R' = CH(3), CF(3)) has been studied with both ab initio molecular orbital and density functional calculations. Geometry optimizations were carried out with the HF/3-21G, HF/HW3, and B3LYP/HW3 methods. The transition structures for these addition reactions are in distorted trigonal bipyramidal geometries, similar to those of alkene additions. The calculated activation enthalpy for HC=CH addition to Mo(NH)(CH(2))(OR')(2) is about 10.3 kcal/mol for R' = CH(3) and about 2.3 kcal/mol for R' = CF(3), indicating a significant preference for acetylene addition to Mo(NH)(CH(2))(OCF(3))(2) over Mo(NH)(CH(2))(OCH(3))(2). These barriers are higher than those of the corresponding ethylene addition by about 2-4 kcal/mol, even though the reaction of acetylene is much more exothermic. The alpha-addition of HC=CR (R = Me, Ph) is found to be considerably more favorable than the beta-addition to Mo(NH)(CH(2))(OR')(2). Interestingly, the alpha-addition has a lower activation energy, while the beta-addition has a higher activation energy, compared to that of the parent acetylene addition. Thus, alpha-addition is intrinsically favored over beta-addition by over 4 kcal/mol. This preference is reduced by solvent effect. All these can be explained by a destabilizing interaction between the nonreacting pi-orbital of alkyne and one of the lone pairs on the imido nitrogen. The steric effect of the bulky ligands in the real catalysts is also investigated qualitatively by the PM3 method. These studies give results in good accord with the experimentally observed regioselectivity.     

Thermochemistry of the fluoroformyloxyl radical: a computational study based on coupled cluster theory

The standard enthalpy of formation of FCO(2) (X (2)B(2)) was determined by a computational approach based on coupled cluster theory [CCSD(T)] with energies extrapolated to the basis-set limit, with additional corrections accounting for core-valence correlation, scalar relativity, spin-orbit coupling, and zero-point vibrational motions. Utilizing a variety of independent reaction schemes, our best estimate is Delta(f)H(o)(0)(FCO(2)) = -86.0 +/- 0.6 kcal mol(-1) [Delta(f)H(o)(298) )(FCO(2)) = -86.7 +/- 0.6 kcal mol(-1)], which is shown to be more accurate than previous theoretical and experimental values. The chosen computational procedure was also applied to HCO (X (2)A'), where we find excellent agreement with experiment, and to FCO (X (2)A'), where we recommend an improved value of Delta(f)H(o)(0)(FCO) = -42.1 +/- 0.5 kcal mol(-1) [ Delta(f)H(o)(298)(FCO) = -42.0 +/- 0.5 kcal mol(-1)]. Further theoretical results concern the C-F bond dissociation energy, electron affinity, ionization energy, first and second excitation energies in FCO(2), fluoride ion affinity of CO(2), and equilibrium geometries of the molecules treated presently. For FCO (X (2)A') we propose an improved equilibrium structure: r(e)(CF) = 132.5(2) pm, r(e)(CO) = 116.7(2) pm, and theta(e)(FCO) = 127.8(2)(o).     

Proton transfer to nickel-thiolate complexes. 1. Protonation of [Ni(SC(6)H(4)R-4)(2)(Ph(2)PCH(2)CH(2)PPh(2))] (R = Me, MeO, H, Cl, or NO(2))

The kinetics of the equilibrium reaction between [Ni(SC(6)H(4)R-4)(2)(dppe)] (R= MeO, Me, H, Cl, or NO(2); dppe = Ph(2)PCH(2)CH(2)PPh(2)) and mixtures of [lutH](+) and lut (lut = 2,6-dimethylpyridine) in MeCN to form [Ni(SHC(6)H(4)R-4)(SC(6)H(4)R-4)(dppe)](+) have been studied using stopped-flow spectrophotometry. The kinetics for the reactions with R = MeO, Me, H, or Cl are consistent with a single-step equilibrium reaction. Investigation of the temperature dependence of the reactions shows that DeltaG = 13.6 +/- 0.3 kcal mol(-)(1) for all the derivatives but the values of DeltaH and DeltaS vary with R (R = MeO, DeltaH() = 8.5 kcal mol(-)(1), DeltaS = -16 cal K(-)(1) mol(-)(1); R = Me, DeltaH() = 10.8 kcal mol(-)(1), DeltaS = -9.5 cal K(-)(1) mol(-)(1); R = Cl, DeltaH = 23.7 kcal mol(-)(1), DeltaS = +33 cal K(-)(1) mol(-)(1)). With [Ni(SC(6)H(4)NO(2)-4)(2)(dppe)] a more complicated rate law is observed consistent with a mechanism in which initial hydrogen-bonding of [lutH](+) to the complex precedes intramolecular proton transfer. It seems likely that all the derivatives operate by this mechanism, but only with R = NO(2) (the most electron-withdrawing substituent) does the intramolecular proton transfer step become sufficiently slow to result in the change in kinetics. Studies with [lutD](+) show that the rates of proton transfer to [Ni(SC(6)H(4)R-4)(2)(dppe)] (R = Me or Cl) are associated with negligible kinetic isotope effect. The possible reasons for this are discussed. The rates of proton transfer to [Ni(SC(6)H(4)R-4)(2)(dppe)] vary with the 4-R-substituent, and the Hammett plot is markedly nonlinear. This unusual behavior is attributable to the electronic influence of R which affects the electron density at the sulfur.