Comparative Studies on Two 1,8-Naphthalimide Derivatives with Experimental and Theoretical Methods

Two 1,8-naphthalimide derivatives of 7H-benzimidazo[2,1,-a]benz[de] isoquino- lin-7-one（1） and 4-bromo-7H-benzimidazo[2,1,-a]benz[de]isoquinolin-7-one（2） have been synthesized and characterized by elemental analysis, IR, 1H NMR, UV-Vis and fluorescence spectra. For the two compounds, density functional theory（DFT） calculations of the structures and natural population atomic charge analysis have been performed at the B3LYP/6-311G＊＊ level of theory. Based on Onsager reaction filed model and by using TD-DFT method at the B3LYP/6-311G＊＊ level, electron spectra of 1 and 2 with solvent effect in CHCl3 solvent have been predicted, which are in agreement with the experimental ones. Comparative studies on 1 and 2 indicate that introducing an electron-withdrawing group of Br into the 4-position of naphthalene ring in 2 does not significantly make the molecular geometry of 2 different from that of 1, but evidently changes the atomic charge redistribution, moves the positive-negative charges center and then changes the dipole moment in 2. Additionally, for compound 2, the existence of Br atom has also influenced the peak intensity and peak locations in both electron and fluorescence spectra.     

取代基对依布硒啉电子结构及光谱性质影响的理论研究

采用密度泛函理论B3LYP方法在6-311++G**水平对依布硒啉及其6个衍生物进行结构优化,并分析了取代基对分子几何构型、电荷分布、前线轨道能级分布的影响.在相同计算水平上采用含时密度泛函理论方法进行了电子光谱研究,讨论了取代基对电子光谱的影响.计算结果表明,标题化合物分子为非平面结构,苯并异硒唑酮环与苯环之间存在一...     

Vibrational and electronic spectra of 9,10-dihydrobenzo(a)pyren-7(8H)-one and 7,8,9,10-tetrahydrobenzo(a)pyrene: an experimental and computational study

The molecular geometries, vibrational and UV-vis spectra of 9,10-dihydrobenzo(a)pyrene-7(8H)-one (9,10-H(2)BaP) and 7,8,9,10-tetrahydrobenzo(a)pyrene (7,8,9,10-H(4)BaP) were investigated using density functional theory (DFT-B3LYP), with the triple-ζ 6-311+G(d,p) and Dunning's cc-pVTZ basis sets. From the comparison of infrared experimental and calculated infrared, and Raman data comprehensive assignments are made. The calculated infrared frequencies below 1800 cm(-1) are in good agreement with experimental data, with an average deviation of <4 cm(-1). Using the B3LYP/6-311+G(d,p)//TD-B3LYP/6-311G(d,p) level of theory, transition energies, and oscillator strengths of the 30 lowest electronic absorption bands are assigned to π-π* transitions, with good qualitative agreement between experimental and simulated absorption data. In addition, the HOMO-LUMO gaps and their chemical hardness were analyzed.     

Synthesis, characterization, crystal structure and DFT studies on 3-(1H-benzo[d][1,2,3]triazol-1-yl)-1-oxo-1-m-tolylpropan-2-yl-nicotinate

3-(1H-Benzo[d][1,2,3]triazol-1-yl)-1-oxo-1-m-tolylpropan-2-yl-nicotinate (BOTN) has been synthesized and characterized by elemental analysis, IR, UV-vis and fluorescence spectroscopy. Its crystal structure has also been determined by X-ray single crystal diffraction. For BOTN, density functional theory (DFT) calculations of the structure and vibrational frequencies have been performed at B3LYP/6-311G** level. The comparisons between the experimental vibrational frequencies and the predicted data show that B3LYP/6-311G** method can simulate the IR of BOTN on the whole. Based on the vibration analysis, thermodynamic properties of BOTN have been calculated. The correlative equations between the thermodynamic properties and the temperatures have also been listed. The experimental UV-vis spectra present two peaks and theoretical UV-vis spectra obtained by TD-DFT method exhibit three peaks. The comparison between them suggests that the B3LYP/6-311G** method can only approximately simulate the UV-vis spectra of BOTN. The fluorescence determination reveals two emission bands at 423 and 489 nm, respectively.     

丁二酰亚胺的结构、振动频率和热力学性质计算

用密度泛函理论（ＤＦＴ）和从头计算（ａｂ ｉｎｉｔｉｏ）方法,在Ｂ３ＬＹＰ／６－３１Ｇ、Ｂ３ＬＹＰ／６－３１１Ｇ和ＭＰ２／６－３１１Ｇ水平上,全优化计算了了二酰亚胺的分子几何构型和电子结构．进行了简正振动频率分析并用校正后的频率计算了２００－６００Ｋ温度范围的标准热力学函数,对计算结果进行了比较和讨论．     

利用密度泛函理论研究α-联噻吩体系H(C_4H_2S)_nH的结构和电子光谱

应用密度泛函理论,在B3LYP/6-31G(d)和CAM-B3LYP/6-31G(d)水平上优化了α-联噻吩体系H(C4H2S)n H(n=2¹3)的基态几何构型;与此同时,利用TD-B3LYP方法计算了H(C4H2S)n H的吸收光谱,得到了其垂直激发能和体系大小n的解析表达式;并采用TD-CAM-B3LYP方法研究了其发射光谱.研究表明,H(C4H2S)n H的基态结构呈现三种构型:螺旋上升型、环型和稍有弯曲的带状结构;其中前两种构型是顺式结构,最后一种构型是反式结构;环型结构具有C2对称性,其他两种结构具有C1对称性.此外,其吸收光谱和发射光谱计算值与实验值吻合.     

硝酸甲与硝酸乙酯的结构、振动频率和热力学性质的密度函数 理论(DFT)研究

用密度函数理论(DFT)的BLYP和B3LYP方法,取6-31G,6-31G^*,6-31G^*^*,6-311G,6-311G^*和6-311G^*^*六种基组,对硝酸甲酯和硝酸乙酯的几何构型和红外振动频率进行了计算研究.结果表明,B3LYP方法在采用极化基组(6-31G^*,6-31G^*^*,6-311G^*和6-311G^*^*)时计算得到的结果均较好,适用于硝酸酯类化合物的研究.而BLYP方法无论采用何种基组均不适用;运用校正后的B3LYP/6-31G^*频率(校正因子0.975)计算得到的热力学性质(C^o~p,H^o和S^o)与实验结果较吻合。     

Effects of the 3- and 4-methoxy and acetamide substituents and solvent environment on the electronic properties of N-substituted 1,8-naphthalimide derivatives

The photophysical properties of polar molecules in solution with an intramolecular charge-transfer effect in the excited state depend strongly on the polarity and proticity of the solvents. UV-visible spectra of 1,8-naphthalimide and some N-substituted derivatives in acetic acid, acetonitrile, dichloromethane, and p-dioxane were carried out. Several molecular cluster geometries formed with N-substituted 1,8-naphthalimide derivatives and a large set of random positioning of some solvent molecules in their environment were optimized by a semiempirical method. It provided a complete screening of possible solute-solvent configurations and resulted in a multiple minima hypersurface of the supramolecular systems. With such local minima energies, the main thermodynamic association functions were found. They also provided selected cluster geometries for calculations of vertical electronic transitions with a time-dependent density functional theory (TD-DFT), if the lowest energy structures were considered. Calculated vertical electronic transition energies at the TD-DFT level were compared with experimental data. The experimental absorption UV-visible spectra for the six compounds in the four solvents were performed in our laboratory. Moreover, X-ray photoelectron spectroscospy of the 1,8-naphthalimide was carried out in the ICP-CSIC laboratory. Thermodynamic function values show different association energies between each solvent and the molecules, in correlation with the possibility of hydrogen bond formation and the polarity and dielectric constant of the solvents. The 3- and 4-acetamide 1,8-naphthalimide derivatives have the highest conformer number and the most negative Gibbs free association energy values for a determined solvent. This indicates the importance of the entropic factors.     

4-(氮杂-15-冠-5)-1,8-萘酰亚胺荧光探针的合成及性能研究

N-丁基-4-溴-1,8-萘酰亚胺与二乙醇胺反应, 合成了N-丁基-4-二(2-羟乙基)氨-1,8-萘酰亚胺, 进一步与对甲基苯磺酸二缩三乙二醇双酯反应合成了N-丁基-4-(氮杂-15-冠-5)-1,8-萘酰亚胺. 用NMR, IR, MS等表征了产物结构. 该化合物在二氯甲烷溶液中识别Li^＋和Na^＋, 识别后吸收光谱和荧光光谱蓝移.     

4-咔唑基-N-（3,′4′-二甲苯基）-1,8-萘二甲酰亚胺作为电子传输材料的实验和理论研究（英文）

通过乌尔曼偶联反应合成了一种新颖的萘胺-咔唑分子,4-咔唑基-N-（3,′4′-二甲苯基）-1,8-萘二甲酰亚胺（CNP）.运用量子化学中的密度泛函理论（TD-DFT）,在B3LYP/6-31（d）水平上对化合物在阴离子、阳离子、中性状态下进行了结构全优化,得到了化合物的总能量、HOMO能级、LUMO能级、电离能和电子亲合势.理论计算了化合物的紫外吸收光谱和红外光谱.紫外吸收光谱、红外光谱、HOMO能级和LUMO能级数值与实验值高度一致.在理论上分析了化合物作为电致发光材料的可能性,化合物CNP是一种很好的电子传输材料.     

尿嘧啶和5-氯尿嘧啶1S0→1S2跃迁动态结构的共振拉曼光谱

采用含时量子波包理论的简单模型对5-氯尿嘧啶和尿嘧啶的共振拉曼光谱开展了强度分析拟合, 获得了1(π, π*)激发态的几何结构变化动态特征. 结果表明, 尿嘧啶1S0→1S2跃迁的动态结构特征因5-位氯原子取代而改变. 5-氯尿嘧啶的动态结构特征主要沿C5=C6伸缩振动+C6H12 弯曲振动和N3H9/N1H7弯曲振动+N1C6伸缩振动反应坐标展开, 而尿嘧啶的动态结构特征主要沿嘧啶环的伸缩振动+C5H11/C6H12/N1H7弯曲振动和C4=O10伸缩振动反应坐标展开. π和π*轨道中氯原子的pz电子参与嘧啶环的p-π共轭作用导致了在1(π, π*)激发态上5-氯尿嘧啶的振动重组能更多地配分给嘧啶环的弯曲振动模式和C5=C6伸缩振动模式. 尿嘧啶在甲醇中的激发态动态结构特征与在水中的基本一致, 但波包沿C5H11/C6H12/N1H7弯曲振动+N1C6伸缩振动(υ12)和环呼吸振动(υ17)反应坐标的运动明显增强.     

On the aromatic character of the heterocyclic bases of DNA and RNA

Studies based on ab initio optimized geometries (at B3LYP/6-311+G** and MP2/6-311+G** levels) and on experimental structures retrieved from the Cambridge Structural Database (CSD) reveal that the nucleobases constituting DNA and RNA differ significantly in their aromatic character, as shown by the geometry-based index of aromaticity HOMA that ranges from 0.466 for thymine to 0.917 for adenine, based on B3LYP/6-311+G** calculations, and 0.495-0.926, respectively, if based on the MP2/6-311+G** level. Aromaticity of the bases decreases markedly with an increase of the number of double-bond C=X (X = N, O) substituents at the rings. H-bonds involving C=O groups in Watson-Crick pairs cause an increase of the aromatic character of the rings.     

Quantum Chemical Study Aimed at Modeling Efficient Aza-BODIPY NIR Dyes: Molecular and Electronic Structure,Absorption, and Emission Spectra

A comprehensive study of the molecular structure of aza-BODIPY and its derivatives, obtained by introduction of one or more substituents, was carried out. We considered the changes in the characteristics of the electronic and geometric structure of the unsubstituted aza-BODIPY introducing the following substituents into the dipyrrin core; phenyl, 2-thiophenyl, 2-furanyl, 3-pyridinyl, 4-pyridinyl, 2-pyridinyl, and ethyl groups. The ground-state geometries of the unsubstituted Aza-BODIPY and 27 derivatives were computed at the PBE/6-31G(d) and CAM-B3LYP/6-31+G(d,p) levels of theory. The time-dependent density-functional theory (TDDFT) together with FC vibronic couplings was used to investigate their absorption and emission spectra.     

Comparison of basis set effects and the performance of ab initio and DFT methods for probing equilibrium fluctuations

The electronic absorption and emission spectra of large molecules reflect the extent and timescale of electron-vibration coupling and therefore the extent and timescale of relaxation/reorganization in response to a perturbation. In this paper, we present a comparison of the calculated absorption and emission spectra of NADH in liver alcohol dehydrogenase (LADH), using quantum mechanical/molecular mechanical methods, in which we vary the QM component. Specifically, we have looked at the influence of basis set (STO-3G, 3-21G*, 6-31G*, CC-pVDZ, and 6-311G**), as well as the influence of applying the DFT TD-B3LYP and ab initio TD-HF and CIS methods to the calculation of absorption/emission spectra and the reorganization energy (Stokes shift). The ab initio TD-HF and CIS methods reproduce the experimentally determined Stokes shift and spectral profiles to a high level of agreement, while the TD-B3LYP method significantly underestimates the Stokes shift, by 45%. We comment on the origin of this problem and suggest that ab initio methods may be naturally more suited to predicting molecular behavior away from equilibrium geometries.     

Density functional theory studies on the structures and vibrational spectra of 3,6-dichlorocarbazole and 3,6-dibromocarbazole

Becke 3-Lee-Yang-Parr density functional theory (DFT) calculations using 6-311G** and 6-311G(2df,p) basis sets were carried out to study molecular structures and vibrational spectra of 3,6-dichlorocarbazole and 3,6-dibromocarbazole. The optimized geometries, vibrational frequencies, IR intensities, and Raman activities have been obtained. On the basis of B3LYP calculations, a normal mode analysis was performed to assign the vibrational fundamental frequencies according to the potential energy distributions. The computational frequencies are in good agreement with the observed results.     

Structure,bonding, and spectra of cyclic dithia radical cations: a theoretical study

Ab initio molecular orbital and hybrid density functional theory methods are employed to characterize the structure, bonding and properties of several cyclic dithia radical cation systems, particularly in the context of intra molecular two-center three-electron (2c-3e) bonding between two sulfur atoms. The calculated results are able to interpret the time-resolved transient optical spectra obtained from pulse radiolysis technique for these positively charged dithia systems in aqueous solution. Visualization of the appropriate molecular orbital (MO) in the systems is able to depict the presence of a 2c-3e bond between two sulfur atoms and its sigma character. Geometry optimizations of these doublet systems are carried out at restricted open shell Becke's half-and-half (BHH) nonlocal exchange and Lee-Yang-Parr (LYP) nonlocal correlation functionals (BHHLYP) with 6-311+G(d,p) basis set including solvent effects adopting Onsager's reaction field model. Hessian calculations are done at the same level to check the nature of the equilibrium geometry. Energy data are further improved by performing MP2/6-311+G(d,p) calculations on these radical cation systems. Excited-state calculations are done following configuration interaction with single-electron excitation (CIS) method and the optical transition wavelength from the highest doubly occupied molecular orbital (HDOMO) to the lowest singly occupied molecular orbital (LSOMO) is seen to correspond and match to the position of the absorption maxima (lambda(max)) obtained from the experimental spectra for all these radical cation systems in aqueous solution. These calculations are able to resolve a long-standing ambiguity in the assignment of intra molecular 2c-3e bonding in the case of the 3-methyl-2,4-dithiapentane radical cation system and to provide new insights into bonding features of this odd electron system as well as of other cyclic dithia systems studied.     

Crystal structure and density functional theory study on structural properties and energies of a isonicotinohydrazide compound

An X-ray and a theoretical study of the structure of the isoniazid derivative N'-(4-dimethylaminobenzylidene)-isonicotinohydrazide monohydrate (1) are reported. In this work, we will report a combined experimental and theoretical study on the molecular structure, vibrational spectra and energies of N'-(4-dimethylaminobenzylidene)-isonicotinohydrazide monohydrate. The calculated parameters are in good agreement with the corresponding X-ray diffraction values. The FTIR spectrum in the range of 400-4000 cm-1 of N'-(4-dimethylaminobenzylidene)-isonicotinohydrazide monohydrate has been recorded. The molecular geometry and vibrational frequencies and energies in the ground state are calculated by using the DFT (B3LYP, PBE1PBE) methods with 6-311G** basis sets. The calculated HOMO and LUMO energies also confirm that charge transfer occurs within the molecule. The geometries and normal modes of vibrations obtained from B3LYP/PBE1PBE/6-311G** calculations are in good agreement with the experimentally observed data.     

Intramolecular hydrogen bond in the push–pull CF3-aminoenones: DFT and FTIR study,NBO analysis

Postulated conformers of trifluoromethylated β-aminoenones stabilized by intramolecular NH?O and N?HO bonds were studied by IR and NMR spectroscopy and evaluated with quantum chemical calculations (B3LYP/6-311+G(d,p), MP2/6-311+G(d,p)//B3LYP/6-311+G(d,p) and MP2/6-31G(d,p)) and NBO analysis. The influence of the nature of EWG, substituents at the nitrogen atom and double bond, and of orbital interactions of heteroatoms and double bonds in these structures on the proton affinity of basic and acid centers, strength of hydrogen bonds, and the energy of tautomeric transfers is discussed. The theoretical results agree satisfactorily with the experimental observations.     

9,9’-螺双芴的光电性能

采用密度泛函理论(DFT)-B3LYP/6-31G(d)方法对9,9'-螺双芴低聚物[(SBF)n(n=1-4)]体系进行全优化, 得到各分子的最高占据轨道(HOMO)和最低空轨道(LUMO)能量及HOMO-LUMO能隙, 结果表明各分子整体表现出很好的共轭性质. 并在分子的阳离子和阴离子状态的优化结构基础上, 计算得到电离势(IP)、电子亲和势(EA)、空穴抽取能(HEP)、电子抽取能(EEP)和重组能等相关能量. 利用单激发组态相互作用(CIS)/3-21G方法优化得到9,9'-螺双芴单体的S1激发态的几何构型. 用含时密度泛函理论(TD-DFT)方法计算得到了分子吸收光谱和荧光光谱的相关数据. 随着聚合长度的增加, 能隙变窄, 空穴注入和电子转移的能力都相应提高, 吸收光所需能量减小, 吸收强度(f)增大, 光谱红移. 采用线性外推法, 利用低聚物分子的各种性质与聚合度n之间的关系, 得到高聚物的相应性质.为考察9位螺芴化的影响, 将(SBF)n的相关性质与母体芴的低聚物[(FL)n(n=1-4)]进行比较, 由两者的计算结果对比显示, 在芴的9位螺芴化可以提高电子和空穴的传输能力, 并同时保留芴优良的发光性质.     

Absorption and Fluorescence Emission Spectra of Molecules Containing Azo and/or Oxadiazole Units

The ground state structures of a series of organic molecules containing azo and/or oxadiazole units were obtained by means of density functional theory B3LYP/6-31G(d) method. The first singlet excited state structures were optimized by virtue of singlet-excitation configuration interaction CIS/6-31G(d) method. The absorption and fluorescence emission spectra were then evaluated via the time-dependent density functional theory B3LYP and PBE1PBE methods with 6-311++G(3df,2p) basis set. The calculation results show that compared with those of their parent molecules A-H, B-H, C-H, D-H, the absorption and emission wavelength values of all the derivatives show red shifts. The derivatives containing both the oxadiazole and methoxyl units are good candidates for longer absorption wavelength materials. The effects of azo, oxadiazole, and methoxyl units on the absorption and emission wavelength were discussed.