Donor→acceptor coordination interactions in 1,3-bis(NHC)triazenyl Cations: An electronic structure analysis

Donor→acceptor coordination interactions (L → N) between ligands and nitrogen center as in L → N^⊕ ← L were reported in the recent past. This article describes the possibility of L → N coordination interactions in triazenyl cation species L → N₃^⊕ ← L. A few 1,3-bis(NHC)triazenyl cation species were experimentally known, the electronic structure analysis reported in this work reveals the presence of L → N (donor→acceptor) interactions in these species. Molecular orbital analysis, NBO charge analysis, energy decomposition analysis, and so forth, confirm the possibility of L → N coordination bond character. Ten molecules with the general formula L → N₃^⊕ ← L have been designed carrying L → N₃^⊕ ← L interactions. © 2019 Wiley Periodicals, Inc.     

Existence of dynamic tautomerism and divalent N(I) character in N‐(pyridin‐2‐yl)thiazol‐2‐amine

N‐(Pyridin‐2‐yl)thiazol‐2‐amine is a versatile chemical functional unit present in many therapeutically important species. Quantum chemical analysis shows that there are six competitive isomeric structures possible for this class of compounds within a relative energy difference of ～4 kcal/mol. Some of the isomeric structures possess divalent N(I) character. There appears to be a competition between the thiazole and pyridine groups to accommodate the tautomeric hydrogen, and consequently show electron donating property in the structure with R‐N←L representation. Details of electron distribution, tautomeric preferences, protonation energy, and divalent N(I) character, and so on, of this class of compounds are presented in this article. Subsequently, upon protonation, (L→N←L)^⊕ character is clearly evident in these moieties as molecular orbital analysis clearly shows two lone pairs of electrons on the central nitrogen, in this system. © 2013 Wiley Periodicals, Inc.     

Divalent NI Compounds: Identifying new Carbocyclic Carbenes to Design Nitreones using Quantum Chemical Methods

Nitreones are compounds with oxidation state 1 at the nitrogen, these compounds carry formal positive charge as well as two lone pairs of electrons at nitrogen center. These compounds are also known as divalent N^I compounds and can be represented with the general formula L → N⁺ ← L, where L is an electron donating ligand. In the recent past, several divalent N^I compounds have been reported with L = N-heterocyclic carbene (NHC), remote N-heterocyclic carbene (rNHC), carbocyclic carbene (CCC) and diaminocarbene. Recently, our group reported that a novel six-membered CCC (cyclohexa-2,5-diene-4-[diaminomethynyl]-1-ylidene) can stabilize N⁺ center in nitreones. As an independent carbene, this species is very unstable. In this work, modulation of this CCC using (a) annulation, (b) heterocyclic ring modification, (c) substitutions adjacent to the carbenic carbon, (d) exocyclic double bond insertion and (e) ring contraction, has been reported. These modulations and quantum chemical analyses helped in the identification of five new six-membered CCCs which carry improved donation and stability properties. Further, these CCCs were employed in the design of new divalent N^I compounds (nitreones) which carry coordination bonds between ligands and N⁺ center. The molecular and electronic structure properties, and the donor→acceptor coordination interactions present in the resultant low oxidation state divalent N^I compounds have been explored.     

Carbodicarbenes and Related Divalent Carbon(0) Compounds

Quantum‐chemical calculations using DFT and ab initio methods have been carried out for fourteen divalent carbon(0) compounds (carbones), in which the bonding situation at the two‐coordinate carbon atom can be described in terms of donor–acceptor interactions L→C←L. The charge‐ and energy‐decomposition analysis of the electronic structure of compounds 1 – 10 reveals divalent carbon(0) character in different degrees for all molecules. Carbone‐type bonding L→C←L is particularly strong for the carbodicarbenes 1 and 2 , for the “bent allenes” 3 a , 3 b , 4 a , and 4 b , and for the carbocarbenephosphoranes 7 a , 7 b , and 7 c . The last‐named molecules have very large first and large second proton affinities. They also bind two BH₃ ligands with very high bond energies, which are large enough that the bis‐adducts should be isolable in a condensed phase. The second proton affinities of the complexes 5 , 6 , and 8 – 10 bearing CO or N₂ as ligand are significantly lower than those of the other molecules. However, they give stable complexes with two BH₃ ligands and thus are twofold Lewis bases. The calculated data thus identify 1 – 10 as carbones L→C←L in which the carbon atom has two electron pairs. The chemistry of carbones is different from that of carbenes because divalent carbon(0) compounds CL₂ are π donors and thus may serve as double Lewis bases, while divalent carbon(II) compounds are π acceptors. The theoretical results point toward new directions for experimental research in the field of low‐coordinate carbon compounds.     

Comparison of Hydrogen and Gold Bonding in [XHX]−, [XAuX]−, and Isoelectronic [NgHNg]+, [NgAuNg]+ (X=Halogen,Ng=Noble Gas)

Quantum chemical calculations at the MP2/aug‐cc‐pVTZ and CCSD(T)/aug‐cc‐pVTZ levels have been carried out for the title compounds. The electronic structures were analyzed with a variety of charge and energy partitioning methods. All molecules possess linear equilibrium structures with D_∞h symmetry. The total bond dissociation energies (BDEs) of the strongly bonded halogen anions [XHX]^? and [XAuX]^? decrease from [FHF]^? to [IHI]^? and from [FAuF]^? to [IAuI]^?. The BDEs of the noble gas compounds [NgHNg]⁺ and [NgAuNg]⁺ become larger for the heavier atoms. The central hydrogen and gold atoms carry partial positive charges in the cations and even in the anions, except for [IAuI]^?, in which case the gold atom has a small negative charge of ?0.03 e. The molecular electrostatic potentials reveal that the regions of the most positive or negative charges may not agree with the partial charges of the atoms, because the spatial distribution of the electronic charge needs to be considered. The bonding analysis with the QTAIM method suggests a significant covalent character for the hydrogen bonds to the noble gas atoms in [NgHNg]⁺ and to the halogen atoms in [XHX]^?. The covalent character of the bonding in the gold systems [NgAuNg]⁺ and [XAuX]^? is smaller than in the hydrogen compound. The energy decomposition analysis suggests that the lighter hydrogen systems possess dative bonds X^?→H⁺←X^? or Ng→H⁺←Ng while the heavier homologues exhibit electron sharing through two‐electron, three‐center bonds. Dative bonds X^?→Au⁺←X^? and Ng→Au⁺←Ng are also diagnosed for the lighter gold systems, but the heavier compounds possess electron‐shared bonds.     

The Fate of NHC‐Stabilized Dicarbon

The attempted synthesis of NHC‐stabilized dicarbon (NHC?C?C?NHC) through deprotonation of a doubly protonated precursor ([NHC?CH?CH?NHC]²⁺) is reported. Rather than deprotonation, a clean reduction to NHC?CH?CH?NHC is observed with a variety of bases. The apparent resistance towards deprotonation to the target compound led to a reinvestigation of the electronic structure of NHC→C?C←NHC, which showed that the highest occupied molecular orbital/lowest unoccupied molecular orbital (HOMO/LUMO) gap is likely too small to allow for isolation of this species. This is in contrast to the recent isolation of the cyclic alkylaminocarbene analogue (cAAC?C?C?cAAC), which has a large HOMO–LUMO gap. A detailed theoretical study illuminates the differences in electronic structures between these molecules, highlighting another case of the potential advantages of using cAAC rather than NHC as a ligand. The bonding analysis suggests that the dicarbon compounds are well represented in terms of donor–acceptor interactions L→C₂←L (L=NHC, cAAC).     

Isolation of Elusive Phosphinidene-Chlorotetrylenes: The Heavier Cyanogen Chloride Analogues

The elusive phosphinidene-chlorotetrylenes, [PGeCl] and [PSiCl] have been stabilized by the hetero-bileptic cyclic alkyl(amino) carbene (cAAC), N-heterocyclic carbene (NHC) ligands, and isolated in the solid state at room temperature as the first neutral monomeric species of this class with the general formulae (L)P-ECl(L′) (E=Ge, 3 a – 3 c ; E=Si, 6 ; L=cAAC; L′=NHC). Compounds 3 a – 3 c have been synthesized by the reaction of cAAC-supported potassium phosphinidenides [cAAC=PK(THF)_x]_n ( 1 a – 1 c ) with the adduct NHC:→GeCl₂ ( 2 ). Similarly, compound 6 has been synthesized via reaction of 1 a with NHC:→SiCl₂ adduct ( 4 ). Compounds 3 a – 3 c , and 6 have been structurally characterized by single-crystal X-ray diffraction, NMR spectroscopy and mass spectrometric analysis. DFT calculations revealed that the heteroatom P in 3 bears two lone pairs; the non-bonding pair with 67.8 % of s- and 32 % of p character, whereas the other lone pair is involved in π backdonation to the C_cAAC-N π* of cAAC. The Ge atom in 3 contains a lone pair with 80 % of s character, and slightly involved in the π backdonation to C_NHC. EDA-NOCV analyses showed that two charged doublet fragments {(cAAC)(NHC)}⁺, and {PGeCl}⁻ prefer to form one covalent electron-sharing σ bond, one dative σ bond, one dative π bond, and a charge polarized weak π bond. The covalent electron-sharing σ bond contributes to the major stabilization energy to the total orbital interaction energy of 3 , enabling the first successful isolations of this class of compounds ( 3 , 6 ) in the laboratory.     

Carbene‐Stabilized Phosphenium Oxides and Sulfides

Carbene→chalcogenophosphenium adducts, which correspond to an intermolecular stabilization mode of the so far elusive, free oxo‐ and thiooxophosphenium species [R₂P⁺ = X] (X=O, S) by imidazolylidene (NHC) and diaminocyclopropenylidene (BAC) donors, have been isolated and fully characterized. The dative character of the R₂C:→P⁺(X)Ph₂ bond was confirmed experimentally by nucleophilic displacement of the carbene donor with a chloride ion and by an exchange reaction of the NHC ligand of the NHC:→P⁺(O)Ph₂ adduct with an independently prepared BAC ligand, thereby giving the BAC:→P⁺(O)Ph₂ adduct. This dative character was further characterized by the DFT‐calculated preference of carbene→chalcogenophosphenium systems for a heterolytic dissociation mode over a homolytic one.     

From As‐Zincoarsasilene (LZn‐As=SiL′) to Arsaethynolato (As≡C−O) and Arsaketenylido (O=C=As) Zinc Complexes

The reactivity of the As‐zincosilaarsene LZn?As=SiL′ A (L=[CH(CMeNDipp)₂]^?, Dipp=2,6‐ⁱPr₂C₆H₃, L′=[{C(H)N(2,6‐ⁱPr₂‐C₆H₃)}₂]^2?) towards small molecules was investigated. Due to the pronounced zwitterionic character of the Si=As bond of A , it undergoes addition reactions with H₂O and NH₃, forming LZnAs(H)SiOH(L′) 1 and LZnAs(H)SiNH₂(L′) 2 . Oxygenation of A with N₂O at ?60 °C furnishes the deep blue 1,2‐disiloxydiarsene, [LZnOSi(L′)As]₂ 4 , presumably via dimerization of the arsinidene intermediate LZnOSi(L′)As 3 . Oxygenation of A with CO₂ leads to the monomeric arsaethynolato siloxido zinc complex LZnOSi(L′)(OC≡As) 5 , essentially trapping the intermediary arsinidene 3 with liberated CO following initial oxidation of the Si=As bond. DFT calculations confirm the ambident coordination mode of the anionic [AsCO] ligand in solution, with the O‐arsaethynolato [As≡C?O]^.? in 5 , and the As‐arsaketenylido ligand mode [O=C=As]^? present in LZnO?Si(L′)(?As=C=O) 5′ akin to the analogous phosphorus system, [PCO]^?.     

Using Ylide Functionalization to Stabilize Boron Cations

The metalated ylide YNa [Y=(Ph₃PCSO₂Tol)⁻] was employed as X,L‐donor ligand for the preparation of a series of boron cations. Treatment of the bis‐ylide functionalized borane Y₂BH with different trityl salts or B(C₆F₅)₃ for hydride abstraction readily results in the formation of the bis‐ylide functionalized boron cation [Y−B−Y]⁺ ( 2 ). The high donor capacity of the ylide ligands allowed the isolation of the cationic species and its characterization in solution as well as in solid state. DFT calculations demonstrate that the cation is efficiently stabilized through electrostatic effects as well as π‐donation from the ylide ligands, which results in its high stability. Despite the high stability of 2 [Y−B−Y]⁺ serves as viable source for the preparation of further borenium cations of type Y₂B⁺←LB by addition of Lewis bases such as amines and amides. Primary and secondary amines react to tris(amino)boranes via N−H activation across the B−C bond.     

Beryllium Atom Mediated Dinitrogen Activation via Coupling with Carbon Monoxide

The reactions of laser‐ablated beryllium atoms with dinitrogen and carbon monoxide mixtures form the end‐on bonded NNBeCO and side‐on bonded (η²‐N₂)BeCO isomers in solid argon, which are predicted by quantum chemical calculations to be almost isoenergetic. The end‐on bonded complex has a triplet ground state while the side‐on bonded isomer has a singlet electronic ground state. The complexes rearrange to the energetically lowest lying NBeNCO isomer upon visible light excitation, which is characterized to be an isocyanate complex of a nitrene derivative with a triplet electronic ground state. A bonding analysis using a charge‐ and energy decomposition procedure reveals that the electronic reference state of Be in the NNBeCO isomers has an 2s⁰2p² excited configuration and that the metal‐ligand bonds can be described in terms of N₂→Be←CO σ donation and concomitant N₂←Be→CO π backdonation. The results demonstrate that the activation of N₂ with the N?N bond being completely cleaved can be achieved via coupling with carbon monoxide mediated by a main group atom.     

Synthesis,spectroscopic, DFT,biological studies and molecular docking of oxovanadium (IV), copper (II) and iron (III) complexes of a new hydrazone derived from heterocyclic hydrazide

A new Schiff base hydrazone (Z)‐2‐(2‐aminothiazol‐4‐yl)‐N′‐(2‐hydroxy‐3‐methoxybenzylidene) acetohydrazide (H₂L) and its chelates [VO (HL)₂]·5H₂O, [Cu (HL)Cl(H₂O)]·2H₂O and [Fe(L)Cl(H₂O)₂]·3H₂O have been isolated and characterized using different physico‐chemical methods, for example infrared (IR), electron paramagnetic resonance (EPR), thermogravimetric analysis and DTG in the solid state, and ¹H‐NMR, ¹³C‐NMR and UV in solution. Magnetic and UV–visible measurements proposed that the coordination environments are square pyramidal, tetrahedral and octahedral geometries for oxovanadium (IV), Cu (II) and Fe (III), respectively. The ligand acts as mono‐negative NO towards oxovanadium (IV) and Cu (II) ions, and bi‐negative ONO for Fe (III) ion. The geometries of the ligand and its complexes were performed using Gaussian 9 program with density functional theory. The EPR spectral data of oxovanadium (IV) and Cu (II) chelates confirmed the mentioned geometries. The molecular modeling was done, and illustrated bond lengths, bond angles, molecular electrostatic potential, Mulliken atomic charges and chemical reactivity for the inspected compounds. Theoretical IR and ¹H‐NMR of the free ligand were calculated. Furthermore, thermodynamic and kinetic parameters for thermal decomposition steps were studied. Docking study of H₂L was applied against the proteins of both bacterial strains Staphylococcus aureus and Escherichia coli, as well as the protein of xanthine oxidase as antioxidant agent by Schrödinger suite program utilizing XP glide protocol. Furthermore, antimicrobial, antioxidant and DNA‐binding activities of the compounds have been carried out.     

The Search for Enhanced σ-Donor Ligands to Stabilize Boron-Boron Multiple Bonds

Boron-boron multiple bonds, such as those found in diborenes and diborynes, are typically stabilized by σ-donor ligands that furnish electron density to these otherwise electron-deficient species. These compounds are not only of fundamental importance in the study of chemical bonding, but can also activate small molecules in a chemistry reminiscent of that carried out by transition metals. In the pursuit of designing new and improved σ-donor ligands to stabilize diborenes and diborynes suitable to activate small molecules, we performed density functional calculations to evaluate the Lewis basicity of a series of σ-donor ligands. For this evaluation, we analysed the interaction between the boranes and the σ-donor ligands in model systems L→BX₃ (X=F and Me) using energy decomposition analyses. We found that electronic bond energies of the L→BX₃ adducts correlate well with the ionization energies of the ligands and that ligands with high or medium basicity stabilize diborynes better than ligands with low basicity. We also learnt that beryllium-based ligands are promising since they are able to stabilize L→B≡B←L diborynes without significantly reducing the triple bond character of the B≡B bond.     

Isoquinoline alkaloids: a 15N NMR and x‐ray study. Part 2

Continuing our systematic ¹⁵N NMR study of isoquinoline alkaloids, we report a contribution extending our previous paper. The ¹⁵N NMR chemical shifts and ¹⁵N,¹H long‐range coupling pathways of tertiary and quaternary isoquinoline alkaloids of several constitutional types are presented. The selected compounds belong to the protoberberine, proaporphine, pavinane, rhoeadine and phtalideisoquinoline classes of alkaloids and were investigated by gradient‐selected inverse‐detected multiple bond correlation experiments (GHMBC and GSQMBC). In addition, x‐ray data and the principal geometric parameters of stylopine, mecambridine, norchelerythrine, isothebaine and mecambrine are reported and discussed. Copyright © 2002 John Wiley & Sons, Ltd.     

Synthesis,Characterization, and Reactivity of Cobalt(III)–Oxygen Complexes Bearing a Macrocyclic N‐Tetramethylated Cyclam Ligand

Mononuclear metal–dioxygen species are key intermediates that are frequently observed in the catalytic cycles of dioxygen activation by metalloenzymes and their biomimetic compounds. In this work, a side‐on cobalt(III)–peroxo complex bearing a macrocyclic N‐tetramethylated cyclam (TMC) ligand, [Co^III(15‐TMC)(O₂)]⁺, was synthesized and characterized with various spectroscopic methods. Upon protonation, this cobalt(III)–peroxo complex was cleanly converted into an end‐on cobalt(III)–hydroperoxo complex, [Co^III(15‐TMC)(OOH)]²⁺. The cobalt(III)–hydroperoxo complex was further converted to [Co^III(15‐TMC‐CH₂‐O)]²⁺ by hydroxylation of a methyl group of the 15‐TMC ligand. Kinetic studies and ¹⁸O‐labeling experiments proposed that the aliphatic hydroxylation occurred via a Co^IV–oxo (or Co^III–oxyl) species, which was formed by O? O bond homolysis of the cobalt(III)–hydroperoxo complex. In conclusion, we have shown the synthesis, structural and spectroscopic characterization, and reactivities of mononuclear cobalt complexes with peroxo, hydroperoxo, and oxo ligands.     

Stable Anilinyl Radicals Coordinated to Nickel: X‐ray Crystal Structure and Characterization

Two anilinosalen and a mixed phenol‐anilinosalen ligands involving sterically hindered anilines moieties were synthesized. Their nickel(II) complexes 1 , 2 , and 3 were prepared and characterized. They could be readily one‐electron oxidized (E_1/2=?0.30, ?0.26 and 0.10 V vs. Fc⁺/Fc, respectively) into anilinyl radicals species [ 1]⁺ , [ 2]⁺ , and [ 3]⁺ , respectively. The radical complexes are extremely stable and were isolated as single crystals. X‐ray crystallographic structures reveal that the changes in bond length resulting from oxidation do not exceed 0.02 Å within the ligand framework in the symmetrical [ 1]⁺ and [ 2]⁺ . No quinoid bond pattern was present. In contrast, larger structural rearrangements were evidenced for the unsymmetrical [ 3]⁺ , with shortening of one C_ortho? C_meta bond. Radical species [ 1]⁺ and [ 2]⁺ exhibit a strong absorption band at around 6000 cm^?1 (class III mixed valence compounds). This band is significantly less intense than [ 3]⁺ , consistent with a rather localized anilinyl radical character, and thus a classification of this species as class II mixed‐valence compound. Magnetic and electronic properties, as well as structural parameters, have been computed by DFT methods.     

A Bis(silylenyl)pyridine Zero‐Valent Germanium Complex and Its Remarkable Reactivity

The synthesis, reactivity, and electronic structure of the unique germylone iron carbonyl complex [SiNSi]Ge⁰ →Fe(CO)₄ is reported. The compound was obtained in 49 % yield from the reaction of the bis(N‐heterocyclic silylenyl)pyridine pincer ligand SiNSi (1,6‐C₅NH₃‐[EtNSi(N^tBu)₂CPh]₂) with GeCl₂?(dioxane) to give the corresponding chlorogermyliumylidene chloride precursor [SiNSi]Ge^IICl⁺ Cl^? , which was further reduced with K₂Fe(CO)₄. Single‐crystal X‐ray diffraction analysis of [SiNSi]Ge →Fe(CO)₄ revealed that the Ge⁰ center adopts a trigonal‐pyramidal geometry with a Si‐Ge‐Si angle of 95.66(2)°. Remarkably, one of the Si^II donor atoms in the complex is five‐coordinated because of additional (pyridine)N→Si coordination. Unexpectedly, the reaction of [SiNSi]Ge →Fe(CO)₄ with GeCl₂?(dioxane) (one molar equivalent) yielded the first push–pull germylone–germylene donor–acceptor complex, [SiNSi]Ge →GeCl₂→Fe(CO)₄ through the insertion of GeCl₂ into the dative Ge⁰→Fe bond. The electronic features of the new compounds were investigated by DFT calculations.     

Density functional theory study of calix[4]arene‐N‐azacrown‐5, calix[4]arene‐N‐phenyl‐azacrown‐5, and their complexes with alkali‐metal cations: Na+, K+, and Rb+

Theoretical studies of 1,3‐alternate‐25,27‐bis(1‐methoxyethyl)calix[4]arene‐azacrown‐5 ( L₁ ), 1,3‐alternate‐25,27‐bis(1‐methoxyethyl)calix[4]arene‐N‐phenyl‐azacrown‐5 ( L₂ ), and the corresponding complexes M⁺/ L of L₁ and L₂ with the alkali‐metal cations: Na⁺, K⁺, and Rb⁺ have been performed using density functional theory (DFT) at B3LYP/6‐31G* level. The optimized geometric structures obtained from DFT calculations are used to perform natural bond orbital (NBO) analysis. The two main types of driving force metal–ligand and cation–π interactions are investigated. The results indicate that intermolecular electrostatic interactions are dominant and the electron‐donating oxygen offer lone pair electrons to the contacting RY* (1‐center Rydberg) or LP* (1‐center valence antibond lone pair) orbitals of M⁺ (Na⁺, K⁺, and Rb⁺). What's more, the cation–π interactions between the metal ion and π‐orbitals of the two rotated benzene rings play a minor role. For all the structures, the most pronounced changes in geometric parameters upon interaction are observed in the calix[4]arene molecule. In addition, an extra pendant phenyl group attached to nitrogen can promote metal complexation by 3D encapsulation greatly. In addition, the enthalpies of complexation reaction and hydrated cation exchange reaction had been studied by the calculated thermodynamic data. The calculated results of hydrated cation exchange reaction are in a good agreement with the experimental data for the complexes. © 2009 Wiley Periodicals, Inc. J Comput Chem, 2010