A compact LED-based module for DNA capillary electrophoresis

A setup consisting of a bifurcated optical fiber made from high-transmission fused-silica cores with relatively high numerical apertures (NA=0.22), high-power cyan light-emitting diodes (LEDs) and Peltier cooling elements controlled by a proportional–integrative–derivative (PID) module is introduced to replace bulky, power- consuming lasers conventionally used in laser induced fluorescence (LIF) microchip capillary electrophoresis (μCE). The output fiber beam size, divergence, power distribution and power stability over time are documented. A modified epifluorescence microscope arrangement is used in conjunction with a compact fixed spectrometer aligned with a cooled charge-coupled device (CCD) camera for added sensitivity. Fluorescent dyes such as fluorescein, 6-carboxyfluorescein (6-FAM) and rhodamine B can be detected in cyclic olefin copolymer (COC) and glass microchannels at submicromolar levels. A single-stranded DNA oligonucleotide (10-mer) labeled with 6-FAM is also detected with reasonable signal-to-noise ratio when electrophoretically migrated at 100 V/cm. The compact LED excitation system presented herein will allow using capillary electrophoresis for DNA detection in compact mobile devices.     

A study on the biological detection chip through the use of PDMS lens for the reinforcement of fluorescence receiving signal

In this study, MEMS process technology is adopted to produce microfluidic chip and PDMS lens. SU-8 thick film photo resist is coated onto silicon wafer surface in two times of spin coating, then through lithography and mold transfer technology, PDMS chip of minimal line width 100 μm and thickness 200 μm is printed. In fluorescence detection aspect, we use objective lens to couple laser optical source to optical fiber, and then have it incident to excite fluorescence sample, the excited fluorescence then passes through filter and detected by optical detector of experiment group and spectrophotometer of reference group. From the experiment result, the Hex fluorescence detection limit of the system is verified to be 1 pmol/5 μl. In addition, we have integrated PDMS lens into microfluidic chip to make generalized detection experiment, it was found that the signal measured by optical embedded type is higher than that of non-embedded type. Meanwhile, the microfluidic chip with double concave lens (135°) and10 mm PDMS focusing lens can be utilized to obtain optimal fluorescence receiving effect. The fluorescence intensity is raised by 2–3 times, and the measurement limit is lowered to 100 fmol/5 μl.     

Fluorescence monitoring of microchip capillary electrophoresis separation with monolithically integrated waveguides

Using femtosecond laser writing, optical waveguides were monolithically integrated into a commercial microfluidic lab-on-a-chip device, with the waveguides intersecting a microfluidic channel. Continuous-wave laser excitation through these optical waveguides confines the excitation window to a width of 12 microm, enabling high-resolution monitoring of the passage of different types of fluorescent analytes when migrating and being separated in the microfluidic channel by microchip capillary electrophoresis. Furthermore, we demonstrate on-chip-integrated waveguide excitation and detection of a biologically relevant species, fluorescently labeled DNA molecules, during microchip capillary electrophoresis. Well-controlled plug formation as required for on-chip integrated capillary electrophoresis separation of DNA molecules, and the combination of waveguide excitation and a low limit of detection, will enable monitoring of extremely small quantities with high spatial resolution.     

Multi-wavelength laser sensor for intruder detection and discrimination

An intruder detection and discrimination sensor with improved optical design is developed using lasers of different wavelengths to demonstrate the concept of discrimination over a distance of 6 m. A distinctive feature of optics is used to provide additional transverse laser beam scanning. The sample objects used to demonstrate the concept of discrimination over a distance of 6 m are leaf, bark, black fabric, PVC, wood and camouflage material. A camouflage material is chosen to illustrate the discrimination capability of the sensor. The sensor utilizes a five-wavelength laser combination module, which sequentially emits identically-polarized laser light beams along one optical path. A cylindrical quasi-optical cavity with improved optical design generates multiple laser light beams for each laser. The intensities of the reflected light beams from the different spots are detected using a high speed area scan image sensor. Object discrimination and detection is based on analyzing the Gaussian profile of reflected light at the different wavelengths. The discrimination between selected objects is accomplished by calculating four different slopes from the objects' reflectance spectra at the wavelengths 473 nm, 532 nm, 635 nm, 670 nm and 785 nm. Furthermore, the camouflage material, which has complex patterns within a single sample, is also detected and discriminated over a 6 m range by scanning the laser beam spots along the transverse direction.     

激光诱导荧光毛细管电泳DNA检测系统信噪比分析

建立了用于DNA分析的激光诱导荧光检测毛细管电泳系统,分析了垂直入射激发光在毛细管中的行进和高分子溶液电泳筛分介质的瑞利散射及毛细管壁折反射引起的激发光背景噪音.利用光线追迹法计算了折反射引起的背景噪音随激发光和收集方向角度不同时的分布曲线以及荧光在各个方向的分布曲线.两种噪音比较表明,散射噪音比激发光背景噪音低4个数量级,可以忽略.模拟表明,光轴方向荧光最强,90°方向最弱,变化在6.5％内.激发和收集方向成105°时,背景噪音最小,可以获得最大的信噪比,最后对模拟结果进行了实验验证.     

A simple reflection-type two-dimensional refractive index profile measurement technique for optical waveguides

We report a new configuration of a reflection-type confocal scanning optical microscope system for measuring the refractive index profile of an optical waveguide. Several improvements on the earlier design are proposed; a light emitting diode at 650 nm wavelength instead of a laser diode or He-Ne laser is used as a light source for better index precision, and a simple longitudinal linear scanning and a curve fitting techniques are adapted instead of a servo control for maintaining an optical confocal arrangement. We have obtained spatial resolution of 800 nm and an index precision of 2 × 10⁻⁴. To verify the system’s capability, the refractive index profiles of a conventional multimode fiber and a home-made four-mode fiber were examined with our proposed measurement method.     

罗丹明B荧光增强苯受激拉曼散射研究

将液芯光纤技术与荧光增强受激拉曼散射技术相结合,能够大大增强受激拉曼散射光谱强度,降低受激拉曼散射阈值。通过对罗丹明B苯溶液在液芯光纤中的受激拉曼散射进行研究,结果表明:荧光染料Rhodamine B可以降低苯溶液的各阶受激拉曼散射阈值近一个数量级;在一定浓度范围内(10-6mol/L~10-8mol/L)各阶Stokes阈值随浓度降低而降低,并在理论上给出了解释。并且理论推导了在荧光种子作用下的四阶耦合波方程。液芯光纤中的受激拉曼光谱技术在对实现宽带受激辐射激光器、种子激光,以及生物大分子结构研究、生物分子的非生物过程研究等领域等有光明应用前景。     

Reversible UV degradation of PMMA plastic optical fibers

Laser-induced fluorescence, Raman and absorption spectroscopy are used to investigate reversible degradation of transmission in PMMA optical fibers. When exposed to 254 nm UV light, optical transmission of PMMA plastic optical fiber in 400-800 nm range shows a significant increase in attenuation for shorter wavelengths. Over a period of 10 days following UV exposure, the transmittance of the plastic fiber recovers to a significant fraction of its pre-exposure value. UV-exposed fiber exhibits strong laser-induced fluorescence with 488 nm argon-ion laser. This fluorescence spans a spectral region between 450 nm and 750 nm with a peak around 580 nm. The fluorescence intensity decreases over several days following UV exposure. Likewise, Raman is also used to investigate degradation process. Freshly UV-exposed fiber shows total absence of Raman spectrum of PMMA. Following UV exposure, recovery of Raman signal over several days is correlated to the recovery of fiber transmittance as well as the decay of laser-induced fluorescence. A widely believed plausible explanation for UV-induced increase of attenuation involves formation of different macro radicals which recombine progressively after UV is stopped. Laser-induced fluorescence over several days is reported here providing direct evidence for molecular-level deterioration and recovery of PMMA.     

Specialty Yb fiber amplifier for microchip Nd laser: Towards ∼1-mJ/1-ns output at kHz-range repetition rate

We demonstrate and optimize, for a mJ/ns release at the wavelength 1.064 μm, the operation of a compact laser system designed in the form of a hybrid, active-passive, Q-switched Nd³⁺:YAG/Cr⁴⁺:YAG microchip laser seeding an Yb-doped specialty multi-port fiber amplifier. As the result of the amplifier optimization, ∼1 mJ, ∼1 ns, almost single-mode pulses at a 1-10-kHz repetition rate are achieved, given by a gain factor of ∼19 dB for an 11-μJ input from the microchip laser. Meanwhile, a lower pulse energy, ∼120 μJ, but a much higher gain (∼25 dB) are eligible for the less powerful (0.35 μJ) input pulses.     

Characterization of ultra-weak fluorescence using picosecond non-collinear optical parametric amplifier

We report a technique for characterization of ultra-weak fluorescence based on a 355-nm pumped picosecond non-collinear optical parametric amplifier (OPA). In the experiment, we effectively reduced the strong super-fluorescence background by using a series of methods. With the picosecond OPA as the pre-amplifier and the gating pulse, the decay of the fluorescence of Rhodamine 6G dye in ethanol was measured and the fluorescence lifetime was found to be about 941 ps. The gain factor of this parametric fluorescence amplifier was measured to be ∼4.2 × 10⁶, while the energy detection limit was ∼160 aJ per pulse within a 15-ps gating pulse.     

Optogalvanic detection of velocity-selective optical pumping in an open, cascade atomic medium

We performed two-color spectroscopy of the (4s²) ¹S₀ → (4s4p) ¹P₁ → (4p²) ¹D₂ calcium atomic transition and observed velocity-selective optical pumping in a calcium hollow cathode lamp by means of optogalvanic detection. The optical pumping signature in optogalvanic detection is compared to that of fluorescence and transmission detections. The optogalvanic technique is found to be a very sensitive method of detecting optical pumping and could be used in distinguishing optical pumping from electromagnetically induced transparency.     

小型化望远式激光共焦扫描显微内窥镜

研制了一种激光共焦扫描显微内窥镜,采用望远式显微内窥光学系统,同时实现长距离的图像中继传输、远心f-theta光学扫描和显微内窥成像功能.二维共焦扫描由双振镜实现,低噪音扫描控制信号由嵌入式系统产生.为实现便携式应用,激光共焦扫描显微内窥镜采用小型化设计方案.首先,体内的显微内窥成像光学系统,外径尺寸为8 mm,工作长度为250.3 mm,可通过标准腹腔镜手术孔进行体内显微内窥成像;其次,采用3 mm通光孔径的小尺寸平面反射镜实现体外共焦扫描,摆动频率为100 Hz,实现快速共焦扫描;最后,激光控制和荧光探测仅通过电缆和光纤与共焦扫描显微内窥镜前端连接,减小了显微内窥镜的前端尺寸和重量.通过实验验证,本系统的成像视场为φ 600 μm,光学分辨率为2.2 μm,可采用手持式或者其他方式工作,进行体内组织的共焦扫描成像,实现微创、在体的荧光显微内窥术.     

Remote fiber sensor based on cascaded Fourier domain mode-locked laser

We propose a high-speed remote fiber Bragg grating (FBG) sensor interrogation system based on a 1.3-μm cascaded Fourier-domain mode-locked (FDML) laser. It consists of multiple FBGs connected to an optical circulator in the laser cavity. The cascaded FDML laser with these multiple FBGs is operational when the scanning frequency of the fiber Fabry-Perot tunable filter matches the fundamental frequency of the laser cavity. Each FBG provides a separate laser cavity for the FDML laser. The scanning frequencies of each laser cavity are 30.5314, 31.5393, 32.7108, and 33.8023 kHz. Using the cascaded FDML laser, we measure the performance of the long-distance static strain FBG sensor interrogation system in both the time and spectral domains. The slope coefficients of the measured relative wavelength difference and the relative time delay from the static strain are found to be 0.95 pm/μstrain and 0.15 ns/μstrain, respectively. We also demonstrate the dynamic response of the interrogation system with 80-Hz modulation strain using the cascaded FDML laser. Thus, an FBG sensor interrogation system for high-speed and high-sensitivity long-distance monitoring systems can be realized using a cascaded FDML laser.     

Scanning laser microscope for imaging nanostructured superconductors

The nanofabrication of superconductors yields various interesting features in superconducting properties. A variety of different imaging techniques have been developed for probing the local superconducting profiles. A scanning pulsed laser microscope has been developed by the combination of the XYZ piezo-driven stages and an optical fiber with an aspheric focusing lens. The scanning laser microscope is used to understand the position-dependent properties of a superconducting MgB₂ stripline of length 100 μm and width of 3 μm under constant bias current. Our results show that the superconducting stripline can clearly be seen in the contour image of the scanning laser microscope on the signal voltage. It is suggested from the observed image that the inhomogeneity is relevant in specifying the operating conditions such as detection efficiency of the sensor.     

Concentration dependence of fluorescence signal in a microfluidic fluorescence detector

Fluorescence detection is one of the most widely used techniques for measuring analyte concentration in biological applications. Although used frequently with bulk systems, there are important considerations in using this approach in thin (<100 μm) microfluidic lab-on-a-chip (LOC) systems in relating the measured fluorescence signal to analyte concentration. In this work, a general relationship between the photoresponse of an on-chip organic photodetector (OPD) and concentration of a fluorescent dye Rhodamine 6G in a microfluidic chip is presented. The developed theoretical model for photoresponse matches well to the extreme sub-linearity observed in measurements in a dilution series from 10 nM to 1 mM. The influence of the system factors, such as noise, detector sensitivity, and optical power were also analyzed to indicate design changes to improve the system performance and limits of detection even further.     

Medium power single-mode single-wavelength fiber laser

Medium-power, single-mode, single-wavelength fiber laser working at room temperature using a polarization-maintaining erbium-ytterbium co-doped fiber as the gain medium, and an un-pumped elliptical core erbium-doped fiber as a saturable absorber to reduce linewidth and mode hopping of the lasing wavelength is reported. The effects of length, erbium ion concentration, and polarization-maintaining property of the saturable absorber were explored. The output power of the laser was more than 100 mW and the lasing line was stable for more than 3 h with an intensity fluctuation of less than 0.2 dB. The laser linewidth (FWHM = Full width at half maximum) was 7.5 MHz and the signal to noise ratio was more than 50 dB. The output of the laser was measured using an optical spectrum analyzer (OSA) of resolution 1.25 GHz and a scanning Fabry-Perot spectrum analyzer (SFPSA) of resolution 6.7 MHz.     

3D photon counting imaging at 1550 nm with 1.5-GHz sine-wave-gated InGaAs/InP GAPD

We demonstrated a 3D laser imaging system at 1550 nm with a 1.5-GHz sine-wave gated Geiger-mode InGaAs/InP avalanche photodiode (APD). An optical fiber bundle with 100 individual fiber outputs was implemented at the focal plane of the telescope, providing a 2.5-mrad imaging view. The system used single-pixel near-infrared single-photon detector to measure photons at fiber outputs instead of a photon counting array. The 1.5-GHz gated Geiger-mode InGaAs/InP APD with a timing jitter of 290 ps was operated in quasi-continuous mode with detection efficiency of ∼4.3%. We achieved higher than 6-cm surface-to-surface resolution at single-photon level, showing a potential of low-energy and eye-safe laser imaging system for long-distance measurements.     

Femtosecond laser induced photoluminescence in poly(methyl methacrylate) and three-dimensional optical storage

We report on a femtosecond-laser induced photoluminescence (PL) in poly(methyl methacrylate) and its potential application to three-dimensional optical storage. Irradiation with a focused 800 nm, 1 kHz, 100 fs pulsed laser induced a strong PL change in UV-visible region. Absorption spectra and Fourier-transform infrared spectra before and after laser irradiation indicate the PL may result from the emissive oxidized products of photo-degradation reaction of PMMA. This makes it possible to read out the stored data by detecting the PL change. The pulse energy threshold of the light-induced PL change of PMMA is found to be at ∼2 μJ/pulse and the optimal recording energy is ∼3 μJ/pulse. A ten-layer pattern inside the bulk sample recorded by tightly focusing a pulsed laser beam was read out by a reflection-type fluorescent confocal microscope, which detected the emission in visible range as the signal. High-contract fluorescent images with a much higher signal-to-noise ratio were obtained without crosstalk in comparison with the ordinary reflection mode.     

Thermally tunable microfiber knot resonator based erbium-doped fiber laser

A compact and tunable erbium-doped fiber laser is demonstrated using a highly doped fiber and a microfiber knot resonator (MKR) structure which is laid on the surface of a small peltier. The MKR functions as both a reflector and a tunable filter where tunability is achieved by varying the temperature of the resonator by heating the peltier. A stable laser output is achieved at the 1533 nm region with an optical signal to noise ratio (OSNR) of 27 dB using a 65 mW of 980 nm pump power. The operating wavelength of the laser can be tuned from 1532.60 nm to 1533.49 nm as the temperature is increased from the room temperature of 24 to 90 °C. It is observed that the operating wavelength shifts to a longer wavelength as the temperature increases with an efficiency of 12.4 pm/°C. This is due to the thermally induced optical phase shift attributable to the changes in effective refractive index and optical path length of the MKR loop.     

Fourier transforms method for measuring thermal lens induced in diluted liquid samples

Drawing on interferometry and Fourier analysis, this paper describes the use of a two-beam thermal lens technique for measuring thermo-optical properties in optical materials. The procedure consists of yield interference patterns deformed by a localized photothermal effect. The photothermal phase shift is locally induced by the pump beam focused on a tested sample located on an on-axis probe beam, which is the first arm of a Mach-Zehnder interferometer. The plane where the effect is localized is imaged onto a CCD camera. Then two interferograms are recorded: one without effect and the other one with the induced photothermal phase. Fourier analysis performed on these interferograms allow us to plot the thermal lens map and, therefore, to estimate thermo-optic constant of Malachite Green in water solution. The method is applied to measure low linear absorptions of a diluted sample of Rhodamine B in water solution at 633 nm, showing that the proposed technique allows to measure photothermal phase shift as low as 3.1 mrad at 8 mW of input power in diluted materials.