Ab Initio Study on Structures and Vibrational Spectra of M+(H2O)Ar2 (M = Cu,Au)

Previous investigations have shown that it is difficult to acquire the infrared (IR) spectra of M⁺(H₂O) (M?=?Cu, Au) using a single IR photon by attaching an Ar atom to M⁺(H₂O). To explore whether the IR spectra can be obtained using the two Ar atoms tagging method, the geometrical structures, IR spectra and interaction energies are investigated in detail by ab initio electronic structure calculations for M⁺(H₂O)Ar₂ (M?=?Cu, Au) complexes. Two conceivable isomeric structures are found, which result from different binding sites for two Ar atoms. CCSD(T) calculations predict that two Ar atoms are most likely to attach to Cu⁺ for the Cu⁺(H₂O)Ar₂ complex, while the Au⁺(H₂O)Ar₂ complex prefers the isomer in which one Ar atom attaches to an H atom of the H₂O molecule and the other one is bound to Au⁺. Moreover, the calculated binding energies of the second Ar atom are smaller than the IR photon energy, and so it is possible to obtain the IR spectra for both Cu and Au species. The changes in the spectra caused by the attachment of Ar atoms to M⁺(H₂O) are discussed.     

双层反铁磁体K3Cu2F7 中轨道序驱动的自旋二聚化

基于自旋-轨道-晶格Hamilton量,应用团簇自洽场方法,研究了双层钙钛矿结构材料K₃Cu₂F₇基态的晶格、磁及轨道结构,发现近孤立的双层的对称破缺和Jahn-Teller晶格畸变使得Cu²⁺离子在每层内交替占据 z²-x²〉/ z²-y²〉轨道,进而导致双层的层间表现为强的反铁磁耦合,层内为弱的铁磁耦合.强反铁磁耦合导致层间     

Domain-based local pair natural orbital CCSD(T) calculations of strongly correlated electron systems: Examination of dynamic equilibrium models based on multiple intermediates in S1 state of photosystem II

ABSTRACT

Domain-based local pair natural orbital (DLPNO) coupled cluster single and double (CCSD) methods with perturbative triples (T) correction with NormalPNO were used to compute energies for twelve different S₁ structures of the CaMn₄O₅ cluster in the oxygen evolving complex (OEC) of photosystem II (PSII). The DLPNO-CCSD(T₀) calculations with TightPNO for the important six structures among them revealed that the right (R)-opened S_1XYZW structures were more stable than the corresponding left (L)-opened structures (X?=?O₍₅₎, Y?=?W2, Z?=?W1, and W?=?O₍₄₎) of CaMn₄O₅. The three different S₁ structures belonging to the R-opened type (S_1acca, S_1bbca, and S_1abcb, where O^2-?=?a, OH^-?=?b and H₂O?=?c) were found nearly degenerated in energy, indicating the possibility of the coexistence of different structures in the S₁ state. The DLPNO-CCSD(T₀) calculations with TightPNO supported the proposal of a dynamic equilibrium model based on the multi-intermediate structures for the S₁ state, which is also in agreement with EPR and other experimental and hybrid DFT computational results. Implications of the computational results are discussed in relation to scope and applicability of NormalPNO and TightPNO for the CCSD(T₀) calculations of strongly correlated electron systems such as 3d transition-metal complexes.     

Theoretical investigation of the structures of unsupported 38-atom CuPt clusters

A genetic algorithm has been used to perform a global sampling of the potential energy surface in the search for the lowest-energy structures of unsupported 38-atom Cu–Pt clusters. Structural details of bimetallic Cu–Pt nanoparticles are analyzed as a function of their chemical composition and the parameters of the Gupta potential, which is used to mimic the interatomic interactions. The symmetrical weighting of all parameters used in this work strongly influences the chemical ordering patterns and, consequently, cluster morphologies. The most stable structures are those corresponding to potentials weighted toward Pt characteristics, leading to Cu–Pt mixing for a weighting factor of 0.7. This reproduces density functional theory (DFT) results for Cu–Pt clusters of this size. For several weighting factor values, the Cu₃₀Pt₈ cluster exhibits slightly higher relative stability. The copper-rich Cu₃₂Pt₆ cluster was reoptimized at the DFT level to validate the reliability of the empirical approach, which predicts a Pt@Cu core-shell segregated cluster. A general increase of interatomic distances is observed in the DFT calculations, which is greater in the Pt core. After cluster relaxation, structural changes are identified through the pair distribution function. For the majority of weighting factors and compositions, the truncated octahedron geometry is energetically preferred at the Gupta potential level of theory.     

The electronic structure,elastic and optical properties of Cu2ZnGe(SexS1 − x)4 alloys: density functional calculations

The electronic structure, elastic and optical properties of Cu₂ZnGe(Se_xS_{1 ? x})₄ alloys are systematically analysed using first-principles calculations. The lattice parameters agree well with the theoretical and experimental values which are searched as complete as possible indicating our calculations are reliable. The elastic properties are investigated first and are compared with the similar compounds CZTS and CZTSe due to the unavailable experimental data currently. The variation of the optical properties caused by the increase of Se/S ratio is discussed. The static optical constants are calculated and the corrected values are also predicted according to the available experimental data.     

Construction of modified embedded atom method potentials for Cu, Pt and Cu-Pt and modelling surface segregation in Cu3Pt alloys

In this work, surface segregation to Cu₃Pt surfaces is studied with the modified embedded atom method (MEAM). This work is triggered by the catalytic importance of Cu-Pt alloys, together with the contradictory experimental results for the surface segregation in Cu₃Pt(1 1 1) alloys based on low energy ion scattering (LEIS) [Y.G. Shen, D.J. O’Connor, K. Wandelt, R.J. MacDonald, Surf. Sci. 328 (1995) 21] and low energy electron diffraction (LEED) [Y. Gauthier, A. Senhaji, B. Legrand, G. Tréglia, C. Becker, K. Wandelt, Surf. Sci. 527 (2003) 71]. In order to accurately describe the segregation behaviour in the Cu₃Pt system, a reliable potential, that is also applicable to surface phenomena, is indispensable. Therefore, first, new MEAM parameters are derived, consistently based on ab initio density functional theory (DFT) calculations, according to a method that is a modification of previous work [P. van Beurden, G.J. Kramer, Phys. Rev. B 63 (2001) 165106]. Upon testing, these parameters prove to reproduce very well various surface properties of this system. Next, Monte Carlo (MC) simulations combined with the newly derived MEAM potentials are set up to investigate surface segregation to low index single crystal surfaces. For the Cu₃Pt(1 1 1) surface, our MC/MEAM simulations agree completely with the available LEIS evidence and contradict the unusual depth profile based on LEED. However, the slight Pt enrichment observed in the LEED experiments can be reproduced by assuming a slight Pt excess in the bulk of the sample. The simulated composition depth profile, on the other hand, does not agree with the LEED evidence. Also, for the Cu₃Pt(1 0 0) surface, the MC/MEAM results agree completely with LEIS experiments. For the Cu₃Pt(1 1 0) surface, finally, the MC/MEAM simulations show a somewhat deviating behaviour with respect to the experimental LEIS evidence. The possibility of a missing-row reconstruction is evaluated, but cannot explain the discrepancy for the Cu₃Pt(1 1 0) system. In order to further investigate the deviation from the experiments, additional DFT and MEAM calculations are performed in search of the preferred surface termination for Cu₃Pt(1 1 0). Both DFT and MEAM calculations agree on the pure Cu layer as the most stable surface termination. Although the experiment was extensively tested for reproducibility, it possibly reflects a metastable state. Finally, in view of the importance of small and less orderly particles in catalysis, the newly derived MEAM parameters are used in order to study the segregation to Cu₃Pt vicinal surfaces with {1 1 1} terraces, for which no experimental information is available yet.     

平面结构Ga5N5团簇电子结构的第一性原理计算研究=

用基于密度泛函理论的第一性原理、全电子、从头算法研究了Ga5N5团簇的一个奇异的稳定平面结构，给出其电子结构、电子亲和势、电离能和结合能。计算结果显示Ga5N5团簇的该平面结构是稳定的，没有自旋磁矩。计算发现在团簇的N3基团中的结合在一起的三个氮原子间有大的电荷转移，尽管没有自由的N3分子能存在。这也许对Ga5N5团簇的具有最低基态能量的该平面结构的稳定性是重要的。     

Ga6N6团簇结构性质的理论计算研究

在密度泛函理论的基础上，对Ga₆N₆团簇进行了第一性原理、全电子、从头计算，得到了10种可能的三维空间结构及其电子结构.其中最稳定结构的一对GaN原子的平均结合能为9.748 eV，因此是可能存在的.但与他人计算的Ga₃N₃和Ga₅N₅相比，Ga₆N₆团簇可能不属于“幻数”团簇.最稳定结构的Ga₆N_{6 关键词： GaN 团簇 电子结构}     

A low-temperature tilter system and its application to the measurement of the anisotropy of optical rotation in K2Zncl4 in the vicinity of the phase transition at 145 k

The ferroelectric/ferroelastic phase transition of K₂ZnCl₄ at 145 K has been investigated employing the tilter method (Kaminsky and Glazer (1996) Ferroelectrics 183, 133) which was adapted to low-temperature experiments. We were able to observe the anisotropy of optical rotation in K₂ZnCl₄ which shows a distinct discontinuity at the transition temperature. A precursor-optical rotation in the ferroelectric phase is discussed in connection with a cluster ordering scheme suggested in an earlier X-ray study. The rotation of the optical indicatrix which accompanies the transition from the orthorhombic to the monoclinic system shows a Landau-type temperature dependence. Model calculations based on the dipole-dipole interaction between the atoms of the structures at different temperatures are in qualitative agreement with the experimental results.     

DFT study on the structure and spectra of GasP5 cluster

In this paper, possible structures of GasP5 cluster were optimized by using density functional method with generalized gradient correction （B3LYP）. The electronic structure of the isomers with lower energy was studied. The most stable structure obtained for GasP5 is a distorted pentaprism. The Ga-P bond formed in the cluster is strongly ionic. Based on NBO analysis, an average value of 0.59 electron transfers from Gallium to Phosphorus. The bond length 2.33-2.43 is around the value in bulk GaP. The HOMO-LUMO gap is about 2.2 eV. The dipole moment and polarizability are calculated, and the IR and Raman spectra are also presented.     

N掺杂Cu2O薄膜的光学性质及第一性原理分析

采用射频磁控溅射技术, 在不同温度下制备了N掺杂Cu₂O薄膜．透射光谱分析发现, N掺杂导致Cu₂O成为允许的带隙直接跃迁半导体, 并使Cu₂O的光学禁带宽度增加．不同温度下沉积的薄膜光学禁带宽度E_g=2.52± 0.03 eV．第一性原理计算表明, N掺杂导致Cu₂O的禁带宽度增加了约25%, 主要与价带顶下移和导带底上移有关, 与实验报道基本符合．N的2p电子态分布不同于O原子, 在价带顶附近具有较大的态密度是N掺杂Cu₂O变成允许的带隙直接跃迁半导体的根本原因．     

Bonding of nitrogen atoms on Cu(001) surfaces: A cluster approach

A study of the chemisorption of nitrogen atoms on a copper surface has been performed, based on an analysis of the electronic structure of the Cu₅N cluster obtained from self-consistent-field Xα scattered-wave calculations. Our calculations show that the chemisorption of nitrogen on Cu(001) surfaces induces peaks below and above the Cu d-band region in the total density of states curve. The bonding orbitals formed between the N 2p and the Cu valence orbitals are generally found near the bottom of the Cu d-band region, while the antibonding orbitals formed between the N 2p and Cu orbitals are found to lie above the Cu d-band region. These hybridized orbitals involving the N 2p orbital gave a satisfactory interpretation of the adsorbate-induced structure reported in N/Cu(001) ultraviolet photoemission (UPS) studies. In addition, the separate contributions of the N 2p⊥ and 2p∥ states to the total density of states curve of the Cu₅N cluster are given. This information may be useful in interpreting angleresolved UPS data.     

On the guiding principles for understanding of geometrical structures of the CaMn4O5 cluster in oxygen-evolving complex of photosystem II. Proposal of estimation formula of structural deformations via the Jahn–Teller effects

ABSTRACT

Atmospheric oxygenation and evolution of aerobic life on our earth are a result of water oxidation by oxygenic photosynthesis in photosystem II (PSII) of plants, algae and cyanobacteria. The water oxidation in the oxygen-evolving complex (OEC) in PSII is expected to proceed through five oxidation states, known as the S _i (i = 0, 1, 2, 3 and 4) states in the Kok cycle, with the S₁ being the most stable state in the dark. The OEC in PSII involves the active catalytic site made of four Mn ions and one Ca ion, namely the CaMn₄O₅ cluster. Past decades, molecular structures of the CaMn₄O₅ cluster in OEC in PSII have been investigated by the extended X-ray absorption fine structure (EXAFS). The magneto-structural correlations were extensively investigated by electron paramagnetic resonance (EPR) spectroscopy. Recently, Kamiya and Shen groups made great breakthrough for determination of the S₁ structure of OEC of PSII by the X-ray diffraction (XRD) and X-ray free-electron laser (XFEL) experiments, providing structural foundations that are crucial for theoretical investigations of the CaMn₄O₅ cluster. Large-scale quantum mechanics/molecular mechanics calculations starting from the XRD structures elucidated geometrical, electronic and spin structures of the CaMn₄O₅ cluster, indicating an important role of the Jahn–Teller (JT) effect of Mn(III) ions. This paper presents theoretical formulas for estimation of the JT deformations of the CaMn₄O₅ cluster in OEC of PSII. Scope and applicability of the formulas are examined in relation to several different structures of the CaMn₄O₅ cluster proposed by XRD, XFEL, EXAFS and other experiments. Implications of the computational results are discussed for further refinements of geometrical parameters of the CaMn₄O₅ cluster.     

小型二氧化钛团簇(TiO2)n (n=2-8)的低能异构体研究

钛和氧之间存在多种成键方式,但迄今为止,二氧化钛团簇均只有少数几种异构体被报道. 与广泛使用的全局优化方法不同,本工作通过优化大量的随机初始结构,获得(TiO₂)_n (n=2-8)团簇稳定异构体. 首先利用PM6半经验方法对高达一万个以上的初始结构进行初步的优化筛选,并对筛选出的结构进行进一步的DFT计算以获得二氧化钛团簇的稳定异构体. 利用这种策略,发现了大量未经报道的稳定异构体,并提出了(TiO₂)₅和(TiO₂)₈新的最稳定异构体. 这些结构中包括含3个末端氧原子的异构体、含5配位氧原子和6配位钛原子的异构体等未经报道的新结构类型. 与丰富成键特征相对应,发现异构体数目随团簇尺寸的增大而急剧增加,对于(TiO₂)₇和(TiO₂)₈,能量在30 kcal/mol以内的异构体都在50个以上. 该工作发现了大量的二氧化钛小型团簇异构体,并凸显了其多样的结构特征,增进了对二氧化钛纳米团簇的结构、成键的理解,并为进一步的理论模拟、力场优化等提供了理论基础.     

关于Al_nC和Al_nC~+(n=1—8)团簇结构和稳定性的研究

通过采用7种密度泛函理论DFT方法对AlnC进行计算,所得结果与实验数据比较,选择了B3lyp方法和6-311G(d)基组对AlnC及AlnC+(n=1—8)团簇进行结构优化和频率分析,得到了AlnC及AlnC+基态以及亚稳态结构.当n从小到大变化时,这些团簇的结构从平面向立体过渡,平面构型以三角形为主,立体构型主要是三棱柱笼状结构;在这些团簇中的高对称性结构中,中性团簇和阳离子只能有其一是稳定构型;在所研究的团簇中,Al2C和Al5C团簇较为稳定.     

Investigation of structural,half-metallic and elastic properties of a new full-Heusler compound–Ir2MnSi

The electronic structure, magnetic and elastic properties of Ir₂MnSi full-Heusler compound is studied within the framework of Density Functional Theory (DFT). The ferromagnetic (FM) and non-magnetic (NM) states are compared in Cu₂MnAl and Hg₂CuTi prototype structures. The ferromagnetic state in Cu₂MnAl structure has been found energetically more stable than non-magnetic state in these two types of structures. Due to this stability, all calculations are carried out for FM-state. The spin-polarized calculations show that the spin-up electrons of Ir₂MnSi compound have metallic nature, but the spin-down electrons have semiconducting behavior with 0.55 eV energy gap around the Fermi level. The calculated Cauchy pressure and Poisson's ratio indicated that Ir₂MnSi compound is a ductile material. Ir₂MnSi compound is a half-metallic ferromagnet (HMF) and it has 5µ_B magnetic moment. This study will theoretically lead to experimental works in the spintronic field and its applications.     

Theoretical investigation of Cu-containing materials with different valence structure types: BaCu2S2, Li2CuSb,and LiCuS

Optoelectronics research requires cheap materials with a broad spectrum of optical, electronic, and structural properties. The class of Heusler compounds and ternary structures provide many possibilities for finding alternative group IV and III–V semiconductor compounds. This study introduces wider band gap materials for use in solar cells as an alternative to cadmium sulfide buffer layers. The buffer layer is inserted between the absorber layer (p-type) and the transparent window layer (n-type) to enhance the maximum amount of light transmission. Reasonable calculations are reported for the band gaps of copper-containing materials: LiCuS, BaCu₂S₂, and Li₂CuSb. Previous optical analysis measurements of these films determined that the band gaps were 1.8 and 1.9 eV for BaCu₂S₂ and LiCuS, respectively. In general, semiconductor compounds have been studied theoretically, but there are major differences between the experimental and theoretically calculated band gaps. A suitable calculation method for semiconductor compounds is described in this study. For the first time, calculations based on the Engel and Vosko method are introduced for these semiconductor compounds. This method yields band gaps that are comparable to the experimental values, which facilitate the development of microscopic analyses of these compounds. Direct band gaps of 1.15 and 1.7 eV were obtained for BaCu₂S₂ and LiCuS, respectively, whereas the indirect band gap was 0.7 eV for Li₂CuSb.     

Investigations on the local structure and the spin-Hamiltonian parameters for the tetragonal Cu<Superscript>2+</Superscript> centre in ZnGeF<Subscript>6</Subscript>⋅6H<Subscript>2</Subscript>O crystal

The spin-Hamiltonian parameters (g factors g_∥, g_⊥ and hyperfine structure constants A_∥, A_⊥) and the local structure for the tetragonal Cu²⁺ centre in trigonal ZnGeF₆?6H₂O crystal are theoretically studied using the perturbation formulae of these parameters for a 3 d⁹ ion in tetragonally elongated octahedra. In the calculations, the contributions to the spin-Hamiltonian parameters from ligand orbital and spin-orbit coupling are included on the basis of the cluster approach in view of moderate covalency of the studied systems, and the required crystal-field parameters are obtained using the superposition model and the local structures of the studied [Cu(H₂O)₆] ²⁺ cluster. According to the calculations, the ligand octahedra around Cu²⁺ suffer relative elongation τ (≈ 0.085 Å) along the [0 0 1] (or C₄) axis for the tetragonal Cu²⁺ centres in ZnGeF₆?6H₂O crystal, due to the Jahn–Teller effect. The calculated results show good agreement with the experimental data.     

First Principles Determination of Hyperfine Parameters on fcc-Fe8X (X = C, N) Arrangements

In order to investigate some of the fundamental physical properties of the fcc-FeX (X = C, N) austenite solid solutions, we compare the hyperfine parameters obtained by Mössbauer ⁵⁷Fe spectrometry and those obtained by the full-potential linear augmented-plane wave (FLAPW) method. We have focused the study on isomer shifts and quadrupole splittings at Fe sites obtained by FLAPW assuming an Fe₈X structure to sketch the austenite. In the present work, we will discuss this point and compare the results of the calculations with experimental data.     

Spin-Hamiltonian parameters and tetragonal distortion due to the Jahn–Teller effect for Cu2+ centres in trigonal Zn(BrO3)·6H2O crystal

The spin-Hamiltonian parameters (g factors g_//, g_⊥ and hyperfine structure constants ⁶⁵A_// and ⁶⁵A_⊥) for the tetragonal Cu²⁺ centres in trigonal Zn(BrO₃)·6H₂O crystal are calculated from the complete diagonalization (of energy matrix) method (CDM) based on the cluster approach. In the CDM, the Zeeman and hyperfine interaction terms are added to the Hamiltonian in the conventional CDM and the contributions to the spin-Hamiltonian parameters from both the spin-orbit coupling parameter of central d⁹ ion and that of ligand ion are included. The calculated spin-Hamiltonian parameters of Zn(BrO₃)·6H₂O: Cu²⁺ show good agreement with the experimental values and the tetragonal elongation (characterized by ΔR=R_// ? R _⊥, where R_// and R _⊥ represent the metal-ligand distances parallel with and perpendicular to the C₄ axis) due to the static Jahn–Teller effect is obtained from the calculations. The results are discussed.